RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 FOXD1Q16676 465 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 APLP2Q06481 763 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 ABCA10Q8WWZ4 1543 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 RAD54L2Q9Y4B4 1467 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 CC2D2AQ9P2K1 1620 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 TDRD9Q8NDG6 1382 aaKnown RBP4.95□□□□□ -1.62
CHD9-213ENST00000564845 SIN3AQ96ST3 1273 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 SNAPC4Q5SXM2 1469 aa4.95□□□□□ -1.62
CHD9-213ENST00000564845 TARBP1Q13395 1621 aaKnown RBP4.94□□□□□ -1.62
CHD9-213ENST00000564845 CEP164Q9UPV0 1460 aa4.94□□□□□ -1.62
CHD9-213ENST00000564845 ABCA5Q8WWZ7 1642 aa4.94□□□□□ -1.62
CHD9-213ENST00000564845 RRBP1Q9P2E9 1410 aaKnown RBP4.94□□□□□ -1.62
CHD9-213ENST00000564845 ZEB1P37275 1124 aaPredicted RBP4.94□□□□□ -1.62
CHD9-213ENST00000564845 LRRIQ1Q96JM4 1722 aa4.93□□□□□ -1.62
CHD9-213ENST00000564845 GOLGA3Q08378 1498 aa4.93□□□□□ -1.62
CHD9-213ENST00000564845 MAGI3Q5TCQ9 1506 aa4.93□□□□□ -1.62
CHD9-213ENST00000564845 MAPKBP1O60336 1514 aa4.92□□□□□ -1.62
CHD9-213ENST00000564845 MAP3K1Q13233 1512 aa4.92□□□□□ -1.62
CHD9-213ENST00000564845 POLR3GLQ9BT43 218 aa4.91□□□□□ -1.62
CHD9-213ENST00000564845 FGD5Q6ZNL6 1462 aa4.91□□□□□ -1.62
CHD9-213ENST00000564845 DIEXFQ68CQ4 756 aaKnown RBP4.91□□□□□ -1.62
CHD9-213ENST00000564845 TOPBP1Q92547 1522 aa4.91□□□□□ -1.62
CHD9-213ENST00000564845 PTPRKQ15262 1439 aa4.91□□□□□ -1.62
CHD9-213ENST00000564845 ZNF777Q9ULD5 760 aaPredicted RBP4.9□□□□□ -1.62
CHD9-213ENST00000564845 MIER1Q8N108 512 aa4.9□□□□□ -1.63
CHD9-213ENST00000564845 PRDM2Q13029 1718 aa4.9□□□□□ -1.63
CHD9-213ENST00000564845 SAMD9Q5K651 1589 aa4.9□□□□□ -1.63
CHD9-213ENST00000564845 BCANQ96GW7 911 aa4.89□□□□□ -1.63
CHD9-213ENST00000564845 RRP7BPQ9NSQ0 103 aa4.89□□□□□ -1.63
CHD9-213ENST00000564845 ZNF326Q5BKZ1 582 aaKnown RBP4.87□□□□□ -1.63
CHD9-213ENST00000564845 PDS5BQ9NTI5 1447 aa4.87□□□□□ -1.63
CHD9-213ENST00000564845 DNMBPQ6XZF7 1577 aa4.86□□□□□ -1.63
CHD9-213ENST00000564845 PHLDB1Q86UU1 1377 aa4.86□□□□□ -1.63
CHD9-213ENST00000564845 DHX57Q6P158 1386 aaKnown RBP4.86□□□□□ -1.63
CHD9-213ENST00000564845 FHOD3Q2V2M9 1422 aa4.86□□□□□ -1.63
CHD9-213ENST00000564845 GTF3C3Q9Y5Q9 886 aa4.86□□□□□ -1.63
CHD9-213ENST00000564845 PLPPR3Q6T4P5 718 aa4.86□□□□□ -1.63
CHD9-213ENST00000564845 AQRO60306 1485 aaKnown RBP eCLIP4.86□□□□□ -1.635e-7■■□□□ 14.2
CHD9-213ENST00000564845 FANCD2Q9BXW9 1451 aa4.85□□□□□ -1.63
CHD9-213ENST00000564845 ZNF644Q9H582 1327 aaPredicted RBP4.85□□□□□ -1.63
CHD9-213ENST00000564845 TIAM1Q13009 1591 aa4.85□□□□□ -1.63
CHD9-213ENST00000564845 LAMC3Q9Y6N6 1575 aa4.84□□□□□ -1.63
CHD9-213ENST00000564845 IRX6P78412 446 aaPredicted RBP4.84□□□□□ -1.63
CHD9-213ENST00000564845 TRIM52Q96A61 297 aa4.83□□□□□ -1.64
CHD9-213ENST00000564845 DDX10Q13206 875 aaKnown RBP4.83□□□□□ -1.64
CHD9-213ENST00000564845 DISP1Q96F81 1524 aa4.83□□□□□ -1.64
CHD9-213ENST00000564845 ZNF608Q9ULD9 1512 aaPredicted RBP4.82□□□□□ -1.64
CHD9-213ENST00000564845 GRIN2BQ13224 1484 aa4.82□□□□□ -1.64
CHD9-213ENST00000564845 SALL2Q9Y467 1007 aaPredicted RBP4.82□□□□□ -1.64
CHD9-213ENST00000564845 CLSPNQ9HAW4 1339 aa4.81□□□□□ -1.64
CHD9-213ENST00000564845 LRRC9Q6ZRR7 1453 aa4.81□□□□□ -1.64
CHD9-213ENST00000564845 KIF27Q86VH2 1401 aa4.81□□□□□ -1.64
CHD9-213ENST00000564845 PCF11O94913 1555 aaKnown RBP4.81□□□□□ -1.64
CHD9-213ENST00000564845 NEFMP07197 916 aa4.8□□□□□ -1.64
CHD9-213ENST00000564845 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.8□□□□□ -1.643e-10■■■■■ 27.7
CHD9-213ENST00000564845 CFAP43Q8NDM7 1665 aa4.8□□□□□ -1.64
CHD9-213ENST00000564845 CARMIL1Q5VZK9 1371 aa4.79□□□□□ -1.64
CHD9-213ENST00000564845 SLC24A1O60721 1099 aa4.79□□□□□ -1.64
CHD9-213ENST00000564845 THOC2Q8NI27 1593 aaKnown RBP4.79□□□□□ -1.64
CHD9-213ENST00000564845 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.79□□□□□ -1.641e-7■■■■□ 23.5
CHD9-213ENST00000564845 KDM6BO15054 1643 aa4.79□□□□□ -1.64
CHD9-213ENST00000564845 KDM2AQ9Y2K7 1162 aa4.79□□□□□ -1.64
CHD9-213ENST00000564845 MYT1LQ9UL68 1186 aa4.78□□□□□ -1.64
CHD9-213ENST00000564845 WDR62O43379 1518 aa4.78□□□□□ -1.64
CHD9-213ENST00000564845 KIF21AQ7Z4S6 1674 aa4.77□□□□□ -1.65
CHD9-213ENST00000564845 ANO8Q9HCE9 1232 aaPredicted RBP4.77□□□□□ -1.65
CHD9-213ENST00000564845 NUTM2DQ5VT03 806 aaPredicted RBP4.77□□□□□ -1.65
CHD9-213ENST00000564845 ZNF316A6NFI3 1004 aaPredicted RBP4.76□□□□□ -1.65
CHD9-213ENST00000564845 RGL3Q3MIN7 710 aa4.76□□□□□ -1.65
CHD9-213ENST00000564845 CHMP7Q8WUX9 453 aaPredicted RBP4.76□□□□□ -1.65
CHD9-213ENST00000564845 NAIPQ13075 1403 aa4.76□□□□□ -1.65
CHD9-213ENST00000564845 CASKIN1Q8WXD9 1431 aa4.75□□□□□ -1.65
CHD9-213ENST00000564845 EIF5BO60841 1220 aaKnown RBP4.75□□□□□ -1.65
CHD9-213ENST00000564845 CCDC184Q52MB2 194 aa4.75□□□□□ -1.65
CHD9-213ENST00000564845 ADAMTS12P58397 1594 aa4.75□□□□□ -1.65
CHD9-213ENST00000564845 NUP153P49790 1475 aaKnown RBP4.75□□□□□ -1.65
CHD9-213ENST00000564845 TCOF1Q13428 1488 aaKnown RBP4.75□□□□□ -1.65
CHD9-213ENST00000564845 USP34Q70CQ2 3546 aa4.75□□□□□ -1.65
CHD9-213ENST00000564845 HNRNPMP52272 730 aaKnown RBP eCLIP4.75□□□□□ -1.651e-6■■■■□ 24.8
CHD9-213ENST00000564845 UGGT2Q9NYU1 1516 aa4.75□□□□□ -1.65
CHD9-213ENST00000564845 PLEKHG5O94827 1062 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 NUP160Q12769 1436 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 SPATA31E1Q6ZUB1 1445 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 ERCC6Q03468 1493 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 RAB3GAP2Q9H2M9 1393 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 CUL7Q14999 1698 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 EFCAB5A4FU69 1503 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 FYCO1Q9BQS8 1478 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 HFM1A2PYH4 1435 aa4.74□□□□□ -1.65
CHD9-213ENST00000564845 CDK13Q14004 1512 aaKnown RBP4.73□□□□□ -1.65
CHD9-213ENST00000564845 LAMA3Q16787 3333 aa4.72□□□□□ -1.65
CHD9-213ENST00000564845 CENPBP07199 599 aaPredicted RBP4.72□□□□□ -1.65
CHD9-213ENST00000564845 AKNAQ7Z591 1439 aa4.72□□□□□ -1.65
CHD9-213ENST00000564845 MTUS2Q5JR59 1369 aa4.71□□□□□ -1.65
CHD9-213ENST00000564845 GAPVD1Q14C86 1478 aa4.71□□□□□ -1.66
CHD9-213ENST00000564845 CCNB3Q8WWL7 1395 aa4.71□□□□□ -1.66
CHD9-213ENST00000564845 MBD5Q9P267 1494 aa4.71□□□□□ -1.66
CHD9-213ENST00000564845 FAM9BQ8IZU0 186 aa4.71□□□□□ -1.66
CHD9-213ENST00000564845 TEX14Q8IWB6 1497 aa4.7□□□□□ -1.66
CHD9-213ENST00000564845 CTTNBP2Q8WZ74 1663 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms