RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 NISCHQ9Y2I1 1504 aa7.09□□□□□ -1.27
CHD9-213ENST00000564845 DCAF8L2P0C7V8 631 aa6.29□□□□□ -1.4
CHD9-213ENST00000564845 SHROOM4Q9ULL8 1493 aa6.28□□□□□ -1.4
CHD9-213ENST00000564845 SUPT5HO00267 1087 aaKnown RBP6.07□□□□□ -1.44
CHD9-213ENST00000564845 ZCCHC6Q5VYS8 1495 aaKnown RBP6.06□□□□□ -1.44
CHD9-213ENST00000564845 EHMT2Q96KQ7 1210 aa6.04□□□□□ -1.44
CHD9-213ENST00000564845 CCDC180Q9P1Z9 1646 aa5.97□□□□□ -1.45
CHD9-213ENST00000564845 DCAF1Q9Y4B6 1507 aa5.94□□□□□ -1.46
CHD9-213ENST00000564845 MYO15BQ96JP2 1530 aa5.83□□□□□ -1.48
CHD9-213ENST00000564845 FAM9AQ8IZU1 332 aaPredicted RBP5.74□□□□□ -1.49
CHD9-213ENST00000564845 TTBK1Q5TCY1 1321 aaPredicted RBP5.73□□□□□ -1.49
CHD9-213ENST00000564845 PPARGC1BQ86YN6 1023 aaKnown RBP5.73□□□□□ -1.49
CHD9-213ENST00000564845 LOC105371045A0A1W2PR82 267 aa5.7□□□□□ -1.5
CHD9-213ENST00000564845 ABCC9O60706 1549 aa5.68□□□□□ -1.5
CHD9-213ENST00000564845 EIF4G1Q04637 1599 aaKnown RBP5.65□□□□□ -1.5
CHD9-213ENST00000564845 PABPN1Q86U42 306 aaKnown RBP eCLIP5.62□□□□□ -1.51
CHD9-213ENST00000564845 RSF1Q96T23 1441 aaPredicted RBP5.62□□□□□ -1.51
CHD9-213ENST00000564845 RANGAP1P46060 587 aaPredicted RBP5.61□□□□□ -1.51
CHD9-213ENST00000564845 CECR2Q9BXF3 1484 aa5.6□□□□□ -1.51
CHD9-213ENST00000564845 BICRAQ9NZM4 1560 aa5.55□□□□□ -1.52
CHD9-213ENST00000564845 PCGF6Q9BYE7 350 aa5.55□□□□□ -1.52
CHD9-213ENST00000564845 CHIC1Q5VXU3 224 aa5.54□□□□□ -1.52
CHD9-213ENST00000564845 MROH2BQ7Z745 1585 aa5.54□□□□□ -1.52
CHD9-213ENST00000564845 SCRIBQ14160 1630 aa5.52□□□□□ -1.53
CHD9-213ENST00000564845 RB1CC1Q8TDY2 1594 aa5.5□□□□□ -1.53
CHD9-213ENST00000564845 PEG3Q9GZU2 1588 aa5.47□□□□□ -1.53
CHD9-213ENST00000564845 NACADO15069 1562 aa5.47□□□□□ -1.53
CHD9-213ENST00000564845 UNC13AQ9UPW8 1703 aa5.42□□□□□ -1.54
CHD9-213ENST00000564845 TRIM41Q8WV44 630 aa5.4□□□□□ -1.55
CHD9-213ENST00000564845 WIZO95785 1651 aa5.4□□□□□ -1.55
CHD9-213ENST00000564845 BAZ1AQ9NRL2 1556 aaPredicted RBP5.37□□□□□ -1.55
CHD9-213ENST00000564845 SMARCA2P51531 1590 aa5.35□□□□□ -1.55
CHD9-213ENST00000564845 SMARCA4P51532 1647 aa5.33□□□□□ -1.56
CHD9-213ENST00000564845 DNAJC5BQ9UF47 199 aa5.32□□□□□ -1.56
CHD9-213ENST00000564845 CCDC88BA6NC98 1476 aa5.31□□□□□ -1.56
CHD9-213ENST00000564845 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.3□□□□□ -1.56
CHD9-213ENST00000564845 PELP1Q8IZL8 1130 aaKnown RBP5.29□□□□□ -1.56
CHD9-213ENST00000564845 TOP2AP11388 1531 aaKnown RBP5.29□□□□□ -1.56
CHD9-213ENST00000564845 RUSC2Q8N2Y8 1516 aa5.28□□□□□ -1.56
CHD9-213ENST00000564845 ABCC8Q09428 1581 aa5.27□□□□□ -1.57
CHD9-213ENST00000564845 ATAD2BQ9ULI0 1458 aa5.26□□□□□ -1.57
CHD9-213ENST00000564845 ARID3CA6NKF2 412 aa5.26□□□□□ -1.57
CHD9-213ENST00000564845 ATP1B4Q9UN42 357 aaPredicted RBP5.25□□□□□ -1.57
CHD9-213ENST00000564845 UBTFP17480 764 aaKnown RBP5.24□□□□□ -1.57
CHD9-213ENST00000564845 ITGAEP38570 1179 aa5.24□□□□□ -1.57
CHD9-213ENST00000564845 P3H3Q8IVL6 736 aa5.23□□□□□ -1.57
CHD9-213ENST00000564845 SYNJ1O43426 1573 aa5.22□□□□□ -1.57
CHD9-213ENST00000564845 SOGA1O94964 1423 aa5.22□□□□□ -1.57
CHD9-213ENST00000564845 NCAPD3P42695 1498 aa5.21□□□□□ -1.57
CHD9-213ENST00000564845 HNRNPUL2Q1KMD3 747 aaKnown RBP5.21□□□□□ -1.58
CHD9-213ENST00000564845 WRNQ14191 1432 aaPredicted RBP eCLIP5.21□□□□□ -1.585e-6■■□□□ 12.5
CHD9-213ENST00000564845 GOLGB1Q14789 3259 aaKnown RBP5.17□□□□□ -1.58
CHD9-213ENST00000564845 PRXQ9BXM0 1461 aa5.17□□□□□ -1.58
CHD9-213ENST00000564845 HMGXB3Q12766 1538 aa5.17□□□□□ -1.58
CHD9-213ENST00000564845 HRCP23327 699 aa5.16□□□□□ -1.58
CHD9-213ENST00000564845 YTHDC1Q96MU7 727 aaKnown RBP5.15□□□□□ -1.58
CHD9-213ENST00000564845 CFTRP13569 1480 aa5.15□□□□□ -1.58
CHD9-213ENST00000564845 UTRNP46939 3433 aa5.15□□□□□ -1.58
CHD9-213ENST00000564845 CNGB1Q14028 1251 aaPredicted RBP5.15□□□□□ -1.59
CHD9-213ENST00000564845 CCER1Q8TC90 406 aaPredicted RBP5.13□□□□□ -1.59
CHD9-213ENST00000564845 BIVM-ERCC5R4GMW8 1640 aa5.12□□□□□ -1.59
CHD9-213ENST00000564845 HIRIP3Q9BW71 556 aaPredicted RBP5.12□□□□□ -1.59
CHD9-213ENST00000564845 SENP3-EIF4A1A0A087X0R7 540 aa5.12□□□□□ -1.59
CHD9-213ENST00000564845 TOP2BQ02880 1626 aa5.11□□□□□ -1.59
CHD9-213ENST00000564845 CUX1P39880 1505 aa5.1□□□□□ -1.59
CHD9-213ENST00000564845 TRIM26Q12899 539 aaPredicted RBP5.1□□□□□ -1.59
CHD9-213ENST00000564845 ACIN1Q9UKV3 1341 aaKnown RBP5.1□□□□□ -1.59
CHD9-213ENST00000564845 SRCAPQ6ZRS2 3230 aa5.1□□□□□ -1.59
CHD9-213ENST00000564845 SENP3Q9H4L4 574 aaPredicted RBP5.08□□□□□ -1.6
CHD9-213ENST00000564845 RAPGEF2Q9Y4G8 1499 aa5.07□□□□□ -1.6
CHD9-213ENST00000564845 KIF21BO75037 1637 aa5.06□□□□□ -1.6
CHD9-213ENST00000564845 ARAP1Q96P48 1450 aa5.06□□□□□ -1.6
CHD9-213ENST00000564845 TNIKQ9UKE5 1360 aa5.06□□□□□ -1.6
CHD9-213ENST00000564845 FBLN2P98095 1184 aa5.05□□□□□ -1.6
CHD9-213ENST00000564845 MYT1Q01538 1121 aa5.05□□□□□ -1.6
CHD9-213ENST00000564845 KANK4Q5T7N3 995 aaPredicted RBP5.04□□□□□ -1.6
CHD9-213ENST00000564845 CEP162Q5TB80 1403 aa5.04□□□□□ -1.6
CHD9-213ENST00000564845 NESP48681 1621 aa5.04□□□□□ -1.6
CHD9-213ENST00000564845 CLIP1P30622 1438 aa5.03□□□□□ -1.6
CHD9-213ENST00000564845 DENND4BO75064 1496 aaPredicted RBP5.03□□□□□ -1.6
CHD9-213ENST00000564845 CSRNP3Q8WYN3 585 aa5.02□□□□□ -1.61
CHD9-213ENST00000564845 EEA1Q15075 1411 aa5.02□□□□□ -1.61
CHD9-213ENST00000564845 CUX2O14529 1486 aa5.01□□□□□ -1.61
CHD9-213ENST00000564845 BAZ1BQ9UIG0 1483 aaKnown RBP5.01□□□□□ -1.61
CHD9-213ENST00000564845 IGF1RP08069 1367 aa5.01□□□□□ -1.61
CHD9-213ENST00000564845 NEUROD1Q13562 356 aa5.01□□□□□ -1.61
CHD9-213ENST00000564845 ERICH3Q5RHP9 1530 aa5.01□□□□□ -1.61
CHD9-213ENST00000564845 KDM5BQ9UGL1 1544 aa5□□□□□ -1.61
CHD9-213ENST00000564845 ARHGAP35Q9NRY4 1499 aa5□□□□□ -1.61
CHD9-213ENST00000564845 WDR97A6NE52 1622 aa4.99□□□□□ -1.61
CHD9-213ENST00000564845 FAM50AQ14320 339 aaKnown RBP4.99□□□□□ -1.61
CHD9-213ENST00000564845 SCAF1Q9H7N4 1312 aaKnown RBP4.99□□□□□ -1.61
CHD9-213ENST00000564845 CHIC2Q9UKJ5 165 aa4.97□□□□□ -1.61
CHD9-213ENST00000564845 KCNH8Q96L42 1107 aa4.97□□□□□ -1.61
CHD9-213ENST00000564845 PCNTO95613 3336 aa4.97□□□□□ -1.61
CHD9-213ENST00000564845 CADPSQ9ULU8 1353 aa4.97□□□□□ -1.61
CHD9-213ENST00000564845 VPS8Q8N3P4 1428 aa4.96□□□□□ -1.61
CHD9-213ENST00000564845 ARHGEF11O15085 1522 aa4.96□□□□□ -1.62
CHD9-213ENST00000564845 POLA1P09884 1462 aaPredicted RBP4.96□□□□□ -1.62
CHD9-213ENST00000564845 URB2Q14146 1524 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms