RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 CARMIL1Q5VZK9 1371 aa23.41■■□□□ 1.34
LINC00554-201ENST00000564841 VPS8Q8N3P4 1428 aa23.39■■□□□ 1.34
LINC00554-201ENST00000564841 TDRD9Q8NDG6 1382 aaKnown RBP23.39■■□□□ 1.34
LINC00554-201ENST00000564841 TOPBP1Q92547 1522 aa23.38■■□□□ 1.33
LINC00554-201ENST00000564841 MSH5O43196 834 aa23.36■■□□□ 1.33
LINC00554-201ENST00000564841 POLA1P09884 1462 aaPredicted RBP23.36■■□□□ 1.33
LINC00554-201ENST00000564841 KANK4Q5T7N3 995 aaPredicted RBP23.33■■□□□ 1.33
LINC00554-201ENST00000564841 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
LINC00554-201ENST00000564841 ERICH3Q5RHP9 1530 aa23.31■■□□□ 1.32
LINC00554-201ENST00000564841 URB2Q14146 1524 aaKnown RBP23.31■■□□□ 1.32
LINC00554-201ENST00000564841 DNMBPQ6XZF7 1577 aa23.29■■□□□ 1.32
LINC00554-201ENST00000564841 ARAP1Q96P48 1450 aa23.28■■□□□ 1.32
LINC00554-201ENST00000564841 PRKCSHP14314 528 aaPredicted RBP23.27■■□□□ 1.32
LINC00554-201ENST00000564841 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
LINC00554-201ENST00000564841 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.32
LINC00554-201ENST00000564841 TRIM52Q96A61 297 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 ARHGAP35Q9NRY4 1499 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 ABCA10Q8WWZ4 1543 aa23.15■■□□□ 1.3
LINC00554-201ENST00000564841 DDX10Q13206 875 aaKnown RBP23.15■■□□□ 1.3
LINC00554-201ENST00000564841 NEFLP07196 543 aa23.12■■□□□ 1.29
LINC00554-201ENST00000564841 AQRO60306 1485 aaKnown RBP eCLIP23.07■■□□□ 1.28
LINC00554-201ENST00000564841 HIRIP3Q9BW71 556 aaPredicted RBP23.07■■□□□ 1.28
LINC00554-201ENST00000564841 GAPVD1Q14C86 1478 aa23.07■■□□□ 1.28
LINC00554-201ENST00000564841 FHOD3Q2V2M9 1422 aa23.06■■□□□ 1.28
LINC00554-201ENST00000564841 IRX6P78412 446 aaPredicted RBP23.05■■□□□ 1.28
LINC00554-201ENST00000564841 ARID3CA6NKF2 412 aa23.03■■□□□ 1.28
LINC00554-201ENST00000564841 ERCC6Q03468 1493 aa23.02■■□□□ 1.27
LINC00554-201ENST00000564841 ERICH6Q7L0X2 663 aa23■■□□□ 1.27
LINC00554-201ENST00000564841 FBLN2P98095 1184 aa22.99■■□□□ 1.27
LINC00554-201ENST00000564841 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
LINC00554-201ENST00000564841 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
LINC00554-201ENST00000564841 ZNF608Q9ULD9 1512 aaPredicted RBP22.91■■□□□ 1.26
LINC00554-201ENST00000564841 DEKP35659 375 aaKnown RBP22.9■■□□□ 1.26
LINC00554-201ENST00000564841 ANO8Q9HCE9 1232 aaPredicted RBP22.87■■□□□ 1.25
LINC00554-201ENST00000564841 SIN3AQ96ST3 1273 aa22.86■■□□□ 1.25
LINC00554-201ENST00000564841 FANCIQ9NVI1 1328 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 ABCA5Q8WWZ7 1642 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 CUL7Q14999 1698 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
LINC00554-201ENST00000564841 WDR97A6NE52 1622 aa22.83■■□□□ 1.24
LINC00554-201ENST00000564841 FHAD1B1AJZ9 1412 aa22.81■■□□□ 1.24
LINC00554-201ENST00000564841 PPP1R15AO75807 674 aaPredicted RBP22.81■■□□□ 1.24
LINC00554-201ENST00000564841 CDK11AQ9UQ88 783 aaPredicted RBP22.81■■□□□ 1.24
LINC00554-201ENST00000564841 CCNB3Q8WWL7 1395 aa22.8■■□□□ 1.24
LINC00554-201ENST00000564841 PCF11O94913 1555 aaKnown RBP22.79■■□□□ 1.24
LINC00554-201ENST00000564841 NBR1Q14596 966 aa22.78■■□□□ 1.24
LINC00554-201ENST00000564841 CHMP7Q8WUX9 453 aaPredicted RBP22.75■■□□□ 1.23
LINC00554-201ENST00000564841 PHLDB1Q86UU1 1377 aa22.75■■□□□ 1.23
LINC00554-201ENST00000564841 TIAM1Q13009 1591 aa22.74■■□□□ 1.23
LINC00554-201ENST00000564841 RAB3GAP2Q9H2M9 1393 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 ANP32CO43423 234 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 LRRC9Q6ZRR7 1453 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 CTTNBP2Q8WZ74 1663 aa22.72■■□□□ 1.23
LINC00554-201ENST00000564841 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
LINC00554-201ENST00000564841 MTUS2Q5JR59 1369 aa22.7■■□□□ 1.22
LINC00554-201ENST00000564841 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
LINC00554-201ENST00000564841 HNRNPUQ00839 825 aaKnown RBP eCLIP22.68■■□□□ 1.22
LINC00554-201ENST00000564841 FMN1Q68DA7 1419 aa22.67■■□□□ 1.22
LINC00554-201ENST00000564841 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
LINC00554-201ENST00000564841 RRBP1Q9P2E9 1410 aaKnown RBP22.66■■□□□ 1.22
LINC00554-201ENST00000564841 PBRM1Q86U86 1689 aa22.66■■□□□ 1.22
LINC00554-201ENST00000564841 MAPKBP1O60336 1514 aa22.65■■□□□ 1.22
LINC00554-201ENST00000564841 CASKIN1Q8WXD9 1431 aa22.64■■□□□ 1.22
LINC00554-201ENST00000564841 SALL2Q9Y467 1007 aaPredicted RBP22.64■■□□□ 1.22
LINC00554-201ENST00000564841 PAK3O75914 559 aaPredicted RBP22.64■■□□□ 1.21
LINC00554-201ENST00000564841 EFCAB5A4FU69 1503 aa22.64■■□□□ 1.21
LINC00554-201ENST00000564841 WDR62O43379 1518 aa22.64■■□□□ 1.21
LINC00554-201ENST00000564841 CCER2I3L3R5 266 aa22.63■■□□□ 1.21
LINC00554-201ENST00000564841 CCDC136Q96JN2 1154 aa22.61■■□□□ 1.21
LINC00554-201ENST00000564841 B4GALNT3Q6L9W6 998 aa22.6■■□□□ 1.21
LINC00554-201ENST00000564841 FYCO1Q9BQS8 1478 aa22.6■■□□□ 1.21
LINC00554-201ENST00000564841 ADAMTS12P58397 1594 aa22.58■■□□□ 1.2
LINC00554-201ENST00000564841 RTN4Q9NQC3 1192 aaKnown RBP22.55■■□□□ 1.2
LINC00554-201ENST00000564841 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
LINC00554-201ENST00000564841 CHIC2Q9UKJ5 165 aa22.54■■□□□ 1.2
LINC00554-201ENST00000564841 IQGAP2Q13576 1575 aa22.53■■□□□ 1.2
LINC00554-201ENST00000564841 NOP58Q9Y2X3 529 aaKnown RBP22.5■■□□□ 1.19
LINC00554-201ENST00000564841 MAP3K1Q13233 1512 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 SETD5Q9C0A6 1442 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 IL27Q8NEV9 243 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 SAMD9Q5K651 1589 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 THOC2Q8NI27 1593 aaKnown RBP22.49■■□□□ 1.19
LINC00554-201ENST00000564841 MYT1LQ9UL68 1186 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 CFAP43Q8NDM7 1665 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 CDK13Q14004 1512 aaKnown RBP22.45■■□□□ 1.19
LINC00554-201ENST00000564841 PPP4R2Q9NY27 417 aa22.45■■□□□ 1.18
LINC00554-201ENST00000564841 JPH4Q96JJ6 628 aa22.45■■□□□ 1.18
LINC00554-201ENST00000564841 CCDC184Q52MB2 194 aa22.44■■□□□ 1.18
LINC00554-201ENST00000564841 RRP7BPQ9NSQ0 103 aa22.43■■□□□ 1.18
LINC00554-201ENST00000564841 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.43■■□□□ 1.18
LINC00554-201ENST00000564841 NCOA2Q15596 1464 aa22.41■■□□□ 1.18
LINC00554-201ENST00000564841 FGD6Q6ZV73 1430 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 KIAA0586Q9BVV6 1533 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 LRRIQ1Q96JM4 1722 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 ZNF777Q9ULD5 760 aaPredicted RBP22.36■■□□□ 1.17
LINC00554-201ENST00000564841 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
LINC00554-201ENST00000564841 SYNJ2O15056 1496 aa22.35■■□□□ 1.17
LINC00554-201ENST00000564841 EPRSP07814 1512 aaKnown RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms