RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 NISCHQ9Y2I1 1504 aa32.84■■■□□ 2.85
LINC00554-201ENST00000564841 DCAF8L2P0C7V8 631 aa28.18■■■□□ 2.1
LINC00554-201ENST00000564841 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.1
LINC00554-201ENST00000564841 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
LINC00554-201ENST00000564841 HRCP23327 699 aa27.59■■■□□ 2.01
LINC00554-201ENST00000564841 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
LINC00554-201ENST00000564841 SUPT5HO00267 1087 aaKnown RBP27.57■■■□□ 2
LINC00554-201ENST00000564841 PPARGC1BQ86YN6 1023 aaKnown RBP27.4■■□□□ 1.98
LINC00554-201ENST00000564841 PCGF6Q9BYE7 350 aa27.2■■□□□ 1.94
LINC00554-201ENST00000564841 ABCC9O60706 1549 aa27■■□□□ 1.91
LINC00554-201ENST00000564841 MYO15BQ96JP2 1530 aa26.88■■□□□ 1.89
LINC00554-201ENST00000564841 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
LINC00554-201ENST00000564841 CHIC1Q5VXU3 224 aa26.63■■□□□ 1.85
LINC00554-201ENST00000564841 SCRIBQ14160 1630 aa26.52■■□□□ 1.84
LINC00554-201ENST00000564841 PELP1Q8IZL8 1130 aaKnown RBP26.48■■□□□ 1.83
LINC00554-201ENST00000564841 SCAF1Q9H7N4 1312 aaKnown RBP26.34■■□□□ 1.81
LINC00554-201ENST00000564841 LOC105371045A0A1W2PR82 267 aa26.28■■□□□ 1.8
LINC00554-201ENST00000564841 NACADO15069 1562 aa26.12■■□□□ 1.77
LINC00554-201ENST00000564841 TRIM26Q12899 539 aaPredicted RBP26■■□□□ 1.75
LINC00554-201ENST00000564841 RB1CC1Q8TDY2 1594 aa25.91■■□□□ 1.74
LINC00554-201ENST00000564841 PABPN1Q86U42 306 aaKnown RBP eCLIP25.87■■□□□ 1.73
LINC00554-201ENST00000564841 RSF1Q96T23 1441 aaPredicted RBP25.85■■□□□ 1.73
LINC00554-201ENST00000564841 CECR2Q9BXF3 1484 aa25.85■■□□□ 1.73
LINC00554-201ENST00000564841 EHMT2Q96KQ7 1210 aa25.82■■□□□ 1.72
LINC00554-201ENST00000564841 FAM9AQ8IZU1 332 aaPredicted RBP25.64■■□□□ 1.69
LINC00554-201ENST00000564841 ZEB1P37275 1124 aaPredicted RBP25.63■■□□□ 1.69
LINC00554-201ENST00000564841 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
LINC00554-201ENST00000564841 NEUROD1Q13562 356 aa25.59■■□□□ 1.69
LINC00554-201ENST00000564841 ACIN1Q9UKV3 1341 aaKnown RBP25.51■■□□□ 1.67
LINC00554-201ENST00000564841 GTF3C3Q9Y5Q9 886 aa25.45■■□□□ 1.66
LINC00554-201ENST00000564841 WIZO95785 1651 aa25.44■■□□□ 1.66
LINC00554-201ENST00000564841 UNC13AQ9UPW8 1703 aa25.43■■□□□ 1.66
LINC00554-201ENST00000564841 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
LINC00554-201ENST00000564841 MYT1Q01538 1121 aa25.34■■□□□ 1.65
LINC00554-201ENST00000564841 BAZ1AQ9NRL2 1556 aaPredicted RBP25.26■■□□□ 1.63
LINC00554-201ENST00000564841 BICRAQ9NZM4 1560 aa25.19■■□□□ 1.62
LINC00554-201ENST00000564841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.18■■□□□ 1.62
LINC00554-201ENST00000564841 SMARCA4P51532 1647 aa25.11■■□□□ 1.61
LINC00554-201ENST00000564841 DIEXFQ68CQ4 756 aaKnown RBP25.05■■□□□ 1.6
LINC00554-201ENST00000564841 CENPBP07199 599 aaPredicted RBP25.04■■□□□ 1.6
LINC00554-201ENST00000564841 CCER1Q8TC90 406 aaPredicted RBP25■■□□□ 1.59
LINC00554-201ENST00000564841 TTBK1Q5TCY1 1321 aaPredicted RBP24.95■■□□□ 1.58
LINC00554-201ENST00000564841 YTHDC1Q96MU7 727 aaKnown RBP24.92■■□□□ 1.58
LINC00554-201ENST00000564841 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
LINC00554-201ENST00000564841 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
LINC00554-201ENST00000564841 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
LINC00554-201ENST00000564841 ABCC8Q09428 1581 aa24.76■■□□□ 1.55
LINC00554-201ENST00000564841 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.54
LINC00554-201ENST00000564841 BAZ1BQ9UIG0 1483 aaKnown RBP24.67■■□□□ 1.54
LINC00554-201ENST00000564841 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
LINC00554-201ENST00000564841 MIER1Q8N108 512 aa24.49■■□□□ 1.51
LINC00554-201ENST00000564841 PEG3Q9GZU2 1588 aa24.46■■□□□ 1.51
LINC00554-201ENST00000564841 ZNF316A6NFI3 1004 aaPredicted RBP24.45■■□□□ 1.5
LINC00554-201ENST00000564841 SOGA1O94964 1423 aa24.43■■□□□ 1.5
LINC00554-201ENST00000564841 WRNQ14191 1432 aaPredicted RBP eCLIP24.36■■□□□ 1.49
LINC00554-201ENST00000564841 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
LINC00554-201ENST00000564841 UBTFP17480 764 aaKnown RBP24.35■■□□□ 1.49
LINC00554-201ENST00000564841 RANGAP1P46060 587 aaPredicted RBP24.32■■□□□ 1.48
LINC00554-201ENST00000564841 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
LINC00554-201ENST00000564841 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
LINC00554-201ENST00000564841 BCL11AQ9H165 835 aa24.22■■□□□ 1.47
LINC00554-201ENST00000564841 SYNJ1O43426 1573 aa24.18■■□□□ 1.46
LINC00554-201ENST00000564841 SUPT16HQ9Y5B9 1047 aaKnown RBP24.1■■□□□ 1.45
LINC00554-201ENST00000564841 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
LINC00554-201ENST00000564841 ANP32EQ9BTT0 268 aa24.08■■□□□ 1.44
LINC00554-201ENST00000564841 CC2D2AQ9P2K1 1620 aa24.08■■□□□ 1.44
LINC00554-201ENST00000564841 TSHZ2Q9NRE2 1034 aa24.06■■□□□ 1.44
LINC00554-201ENST00000564841 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
LINC00554-201ENST00000564841 HNRNPUL2Q1KMD3 747 aaKnown RBP24.01■■□□□ 1.43
LINC00554-201ENST00000564841 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
LINC00554-201ENST00000564841 EEA1Q15075 1411 aa23.92■■□□□ 1.42
LINC00554-201ENST00000564841 CFTRP13569 1480 aa23.9■■□□□ 1.42
LINC00554-201ENST00000564841 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
LINC00554-201ENST00000564841 TNIKQ9UKE5 1360 aa23.87■■□□□ 1.41
LINC00554-201ENST00000564841 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
LINC00554-201ENST00000564841 CUX1P39880 1505 aa23.84■■□□□ 1.41
LINC00554-201ENST00000564841 BCANQ96GW7 911 aa23.83■■□□□ 1.41
LINC00554-201ENST00000564841 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
LINC00554-201ENST00000564841 RAPGEF2Q9Y4G8 1499 aa23.81■■□□□ 1.4
LINC00554-201ENST00000564841 NESP48681 1621 aa23.81■■□□□ 1.4
LINC00554-201ENST00000564841 CEP164Q9UPV0 1460 aa23.78■■□□□ 1.4
LINC00554-201ENST00000564841 CLIP1P30622 1438 aa23.69■■□□□ 1.38
LINC00554-201ENST00000564841 KCNH8Q96L42 1107 aa23.67■■□□□ 1.38
LINC00554-201ENST00000564841 BIVM-ERCC5R4GMW8 1640 aa23.66■■□□□ 1.38
LINC00554-201ENST00000564841 FANCD2Q9BXW9 1451 aa23.66■■□□□ 1.38
LINC00554-201ENST00000564841 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
LINC00554-201ENST00000564841 CUX2O14529 1486 aa23.64■■□□□ 1.38
LINC00554-201ENST00000564841 APLP2Q06481 763 aa23.62■■□□□ 1.37
LINC00554-201ENST00000564841 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.37
LINC00554-201ENST00000564841 KIF21BO75037 1637 aa23.58■■□□□ 1.37
LINC00554-201ENST00000564841 CLSPNQ9HAW4 1339 aa23.56■■□□□ 1.36
LINC00554-201ENST00000564841 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
LINC00554-201ENST00000564841 FKBP8Q14318 412 aa23.51■■□□□ 1.35
LINC00554-201ENST00000564841 P3H3Q8IVL6 736 aa23.5■■□□□ 1.35
LINC00554-201ENST00000564841 PRXQ9BXM0 1461 aa23.48■■□□□ 1.35
LINC00554-201ENST00000564841 RBM19Q9Y4C8 960 aaKnown RBP23.47■■□□□ 1.35
LINC00554-201ENST00000564841 IGF1RP08069 1367 aa23.47■■□□□ 1.35
LINC00554-201ENST00000564841 ITGAEP38570 1179 aa23.46■■□□□ 1.35
LINC00554-201ENST00000564841 ATP1B4Q9UN42 357 aaPredicted RBP23.45■■□□□ 1.34
LINC00554-201ENST00000564841 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms