RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 DNAJC5BQ9UF47 199 aa11.14□□□□□ -0.63
HERPUD1-209ENST00000564678 PPARGC1BQ86YN6 1023 aaKnown RBP11.13□□□□□ -0.63
HERPUD1-209ENST00000564678 FANCD2Q9BXW9 1451 aa11.12□□□□□ -0.63
HERPUD1-209ENST00000564678 VPS8Q8N3P4 1428 aa11.11□□□□□ -0.63
HERPUD1-209ENST00000564678 LAMC3Q9Y6N6 1575 aa11.09□□□□□ -0.63
HERPUD1-209ENST00000564678 FGD5Q6ZNL6 1462 aa11.08□□□□□ -0.64
HERPUD1-209ENST00000564678 IGF1RP08069 1367 aa11.07□□□□□ -0.64
HERPUD1-209ENST00000564678 CUX2O14529 1486 aa11.07□□□□□ -0.64
HERPUD1-209ENST00000564678 DNMBPQ6XZF7 1577 aa11.06□□□□□ -0.64
HERPUD1-209ENST00000564678 APLP2Q06481 763 aa11.06□□□□□ -0.64
HERPUD1-209ENST00000564678 SLC4A2P04920 1241 aa11.05□□□□□ -0.64
HERPUD1-209ENST00000564678 TMEM132AQ24JP5 1023 aa11.04□□□□□ -0.64
HERPUD1-209ENST00000564678 TOPBP1Q92547 1522 aa11.03□□□□□ -0.64
HERPUD1-209ENST00000564678 CARMIL1Q5VZK9 1371 aa11.02□□□□□ -0.65
HERPUD1-209ENST00000564678 ABCA10Q8WWZ4 1543 aa11.02□□□□□ -0.65
HERPUD1-209ENST00000564678 NESP48681 1621 aa11.02□□□□□ -0.65
HERPUD1-209ENST00000564678 ATXN8OSP0DMR3 200 aa11.01□□□□□ -0.65
HERPUD1-209ENST00000564678 PDS5BQ9NTI5 1447 aa11.01□□□□□ -0.65
HERPUD1-209ENST00000564678 POLA1P09884 1462 aaPredicted RBP11□□□□□ -0.65
HERPUD1-209ENST00000564678 ARAP1Q96P48 1450 aa10.99□□□□□ -0.65
HERPUD1-209ENST00000564678 CCER1Q8TC90 406 aaPredicted RBP10.96□□□□□ -0.65
HERPUD1-209ENST00000564678 TTBK1Q5TCY1 1321 aaPredicted RBP10.96□□□□□ -0.65
HERPUD1-209ENST00000564678 RANGAP1P46060 587 aaPredicted RBP10.96□□□□□ -0.66
HERPUD1-209ENST00000564678 ARHGAP35Q9NRY4 1499 aa10.96□□□□□ -0.66
HERPUD1-209ENST00000564678 PKD2Q13563 968 aa10.95□□□□□ -0.66
HERPUD1-209ENST00000564678 PODXL2Q9NZ53 605 aa10.95□□□□□ -0.66
HERPUD1-209ENST00000564678 RAD54L2Q9Y4B4 1467 aa10.95□□□□□ -0.66
HERPUD1-209ENST00000564678 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.94□□□□□ -0.66
HERPUD1-209ENST00000564678 PAXIP1Q6ZW49 1069 aaPredicted RBP10.94□□□□□ -0.66
HERPUD1-209ENST00000564678 URB2Q14146 1524 aaKnown RBP10.94□□□□□ -0.66
HERPUD1-209ENST00000564678 C14orf37Q86TY3 774 aa10.93□□□□□ -0.66
HERPUD1-209ENST00000564678 CUL7Q14999 1698 aa10.93□□□□□ -0.66
HERPUD1-209ENST00000564678 CFAP44Q96MT7 982 aa10.92□□□□□ -0.66
HERPUD1-209ENST00000564678 WDR97A6NE52 1622 aa10.91□□□□□ -0.66
HERPUD1-209ENST00000564678 MAP3K1Q13233 1512 aa10.9□□□□□ -0.66
HERPUD1-209ENST00000564678 ERICH6Q7L0X2 663 aa10.9□□□□□ -0.66
HERPUD1-209ENST00000564678 NPM1P06748 294 aaKnown RBP eCLIP10.89□□□□□ -0.67
HERPUD1-209ENST00000564678 TSHZ2Q9NRE2 1034 aa10.89□□□□□ -0.67
HERPUD1-209ENST00000564678 KIF21AQ7Z4S6 1674 aa10.87□□□□□ -0.67
HERPUD1-209ENST00000564678 FHAD1B1AJZ9 1412 aa10.87□□□□□ -0.67
HERPUD1-209ENST00000564678 ABCA5Q8WWZ7 1642 aa10.87□□□□□ -0.67
HERPUD1-209ENST00000564678 MYCNP04198 464 aaPredicted RBP10.86□□□□□ -0.67
HERPUD1-209ENST00000564678 GAPVD1Q14C86 1478 aa10.86□□□□□ -0.67
HERPUD1-209ENST00000564678 KANK4Q5T7N3 995 aaPredicted RBP10.86□□□□□ -0.67
HERPUD1-209ENST00000564678 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
HERPUD1-209ENST00000564678 EFCAB5A4FU69 1503 aa10.85□□□□□ -0.67
HERPUD1-209ENST00000564678 MAPK8IP2Q13387 824 aaPredicted RBP10.84□□□□□ -0.67
HERPUD1-209ENST00000564678 RRBP1Q9P2E9 1410 aaKnown RBP10.84□□□□□ -0.67
HERPUD1-209ENST00000564678 IFNLR1Q8IU57 520 aaPredicted RBP10.84□□□□□ -0.67
HERPUD1-209ENST00000564678 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.84□□□□□ -0.67
HERPUD1-209ENST00000564678 TDRD9Q8NDG6 1382 aaKnown RBP10.83□□□□□ -0.68
HERPUD1-209ENST00000564678 HNRNPUL2Q1KMD3 747 aaKnown RBP10.83□□□□□ -0.68
HERPUD1-209ENST00000564678 CTTNBP2Q8WZ74 1663 aa10.83□□□□□ -0.68
HERPUD1-209ENST00000564678 TARBP1Q13395 1621 aaKnown RBP10.83□□□□□ -0.68
HERPUD1-209ENST00000564678 BBXQ8WY36 941 aaPredicted RBP10.82□□□□□ -0.68
HERPUD1-209ENST00000564678 MRC2Q9UBG0 1479 aa10.82□□□□□ -0.68
HERPUD1-209ENST00000564678 AQRO60306 1485 aaKnown RBP eCLIP10.81□□□□□ -0.681e-6■■■■■ 42.4
HERPUD1-209ENST00000564678 TIAM1Q13009 1591 aa10.81□□□□□ -0.68
HERPUD1-209ENST00000564678 RNF216Q9NWF9 866 aaPredicted RBP10.8□□□□□ -0.68
HERPUD1-209ENST00000564678 KLHL34Q8N239 644 aa10.79□□□□□ -0.68
HERPUD1-209ENST00000564678 ATF5Q9Y2D1 282 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-209ENST00000564678 VASPP50552 380 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-209ENST00000564678 CLSPNQ9HAW4 1339 aa10.79□□□□□ -0.68
HERPUD1-209ENST00000564678 FMN1Q68DA7 1419 aa10.78□□□□□ -0.68
HERPUD1-209ENST00000564678 NBR1Q14596 966 aa10.78□□□□□ -0.68
HERPUD1-209ENST00000564678 CCNB3Q8WWL7 1395 aa10.78□□□□□ -0.68
HERPUD1-209ENST00000564678 LRRC9Q6ZRR7 1453 aa10.78□□□□□ -0.68
HERPUD1-209ENST00000564678 FYCO1Q9BQS8 1478 aa10.78□□□□□ -0.68
HERPUD1-209ENST00000564678 FBXO3Q9UK99 471 aa10.77□□□□□ -0.68
HERPUD1-209ENST00000564678 CASKIN1Q8WXD9 1431 aa10.77□□□□□ -0.68
HERPUD1-209ENST00000564678 IFT140Q96RY7 1462 aa10.75□□□□□ -0.69
HERPUD1-209ENST00000564678 FHOD3Q2V2M9 1422 aa10.75□□□□□ -0.69
HERPUD1-209ENST00000564678 CFAP43Q8NDM7 1665 aa10.75□□□□□ -0.69
HERPUD1-209ENST00000564678 WDR62O43379 1518 aa10.75□□□□□ -0.69
HERPUD1-209ENST00000564678 SAMD9Q5K651 1589 aa10.74□□□□□ -0.69
HERPUD1-209ENST00000564678 P3H3Q8IVL6 736 aa10.74□□□□□ -0.69
HERPUD1-209ENST00000564678 PCF11O94913 1555 aaKnown RBP10.74□□□□□ -0.69
HERPUD1-209ENST00000564678 PBRM1Q86U86 1689 aa10.74□□□□□ -0.69
HERPUD1-209ENST00000564678 GRIN2BQ13224 1484 aa10.73□□□□□ -0.69
HERPUD1-209ENST00000564678 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.7□□□□□ -0.7
HERPUD1-209ENST00000564678 ADAMTS12P58397 1594 aa10.7□□□□□ -0.7
HERPUD1-209ENST00000564678 SNAPC4Q5SXM2 1469 aa10.7□□□□□ -0.7
HERPUD1-209ENST00000564678 THOC2Q8NI27 1593 aaKnown RBP10.69□□□□□ -0.7
HERPUD1-209ENST00000564678 DHX57Q6P158 1386 aaKnown RBP10.68□□□□□ -0.7
HERPUD1-209ENST00000564678 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
HERPUD1-209ENST00000564678 ATP1B4Q9UN42 357 aaPredicted RBP10.68□□□□□ -0.7
HERPUD1-209ENST00000564678 IQGAP2Q13576 1575 aa10.66□□□□□ -0.7
HERPUD1-209ENST00000564678 ERCC6Q03468 1493 aa10.66□□□□□ -0.7
HERPUD1-209ENST00000564678 ZNF316A6NFI3 1004 aaPredicted RBP10.66□□□□□ -0.7
HERPUD1-209ENST00000564678 SPRYD3Q8NCJ5 442 aa10.65□□□□□ -0.71
HERPUD1-209ENST00000564678 ZNF608Q9ULD9 1512 aaPredicted RBP10.64□□□□□ -0.71
HERPUD1-209ENST00000564678 MTUS2Q5JR59 1369 aa10.64□□□□□ -0.71
HERPUD1-209ENST00000564678 UGGT2Q9NYU1 1516 aa10.64□□□□□ -0.71
HERPUD1-209ENST00000564678 CCDC18Q5T9S5 1454 aa10.63□□□□□ -0.71
HERPUD1-209ENST00000564678 KIAA0586Q9BVV6 1533 aa10.63□□□□□ -0.71
HERPUD1-209ENST00000564678 DIEXFQ68CQ4 756 aaKnown RBP10.63□□□□□ -0.71
HERPUD1-209ENST00000564678 SETD5Q9C0A6 1442 aa10.63□□□□□ -0.71
HERPUD1-209ENST00000564678 NPM2Q86SE8 214 aaKnown RBP10.62□□□□□ -0.71
HERPUD1-209ENST00000564678 DNAJC5Q9H3Z4 198 aa10.62□□□□□ -0.71
HERPUD1-209ENST00000564678 MAGI1Q96QZ7 1491 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms