RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 CHIC1Q5VXU3 224 aa15.9■□□□□ 0.14
HERPUD1-209ENST00000564678 NISCHQ9Y2I1 1504 aa15.61■□□□□ 0.09
HERPUD1-209ENST00000564678 AEBP2Q6ZN18 517 aaPredicted RBP15.29■□□□□ 0.04
HERPUD1-209ENST00000564678 PHF23Q9BUL5 403 aaPredicted RBP14.3□□□□□ -0.12
HERPUD1-209ENST00000564678 POTEDQ86YR6 584 aa14.02□□□□□ -0.17
HERPUD1-209ENST00000564678 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
HERPUD1-209ENST00000564678 SLC24A1O60721 1099 aa13.79□□□□□ -0.2
HERPUD1-209ENST00000564678 CCDC180Q9P1Z9 1646 aa13.46□□□□□ -0.26
HERPUD1-209ENST00000564678 PLPPR3Q6T4P5 718 aa13.37□□□□□ -0.27
HERPUD1-209ENST00000564678 KCNA4P22459 653 aa13.29□□□□□ -0.28
HERPUD1-209ENST00000564678 CSRNP3Q8WYN3 585 aa13.17□□□□□ -0.3
HERPUD1-209ENST00000564678 ZCCHC6Q5VYS8 1495 aaKnown RBP13.15□□□□□ -0.3
HERPUD1-209ENST00000564678 RTN4Q9NQC3 1192 aaKnown RBP13.04□□□□□ -0.32
HERPUD1-209ENST00000564678 DCAF1Q9Y4B6 1507 aa12.94□□□□□ -0.34
HERPUD1-209ENST00000564678 SHROOM4Q9ULL8 1493 aa12.89□□□□□ -0.35
HERPUD1-209ENST00000564678 DCAF8L2P0C7V8 631 aa12.8□□□□□ -0.36
HERPUD1-209ENST00000564678 ADRA2BP18089 450 aa12.8□□□□□ -0.36
HERPUD1-209ENST00000564678 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
HERPUD1-209ENST00000564678 AMER1Q5JTC6 1135 aaPredicted RBP12.71□□□□□ -0.37
HERPUD1-209ENST00000564678 MYO15BQ96JP2 1530 aa12.69□□□□□ -0.38
HERPUD1-209ENST00000564678 SUPT5HO00267 1087 aaKnown RBP12.58□□□□□ -0.4
HERPUD1-209ENST00000564678 NACADO15069 1562 aa12.5□□□□□ -0.41
HERPUD1-209ENST00000564678 SENP3Q9H4L4 574 aaPredicted RBP12.47□□□□□ -0.41
HERPUD1-209ENST00000564678 ABCC9O60706 1549 aa12.45□□□□□ -0.42
HERPUD1-209ENST00000564678 SCRIBQ14160 1630 aa12.38□□□□□ -0.43
HERPUD1-209ENST00000564678 ZBTB22O15209 634 aa12.35□□□□□ -0.43
HERPUD1-209ENST00000564678 NCBP3Q53F19 620 aaKnown RBP12.31□□□□□ -0.44
HERPUD1-209ENST00000564678 RB1CC1Q8TDY2 1594 aa12.31□□□□□ -0.44
HERPUD1-209ENST00000564678 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
HERPUD1-209ENST00000564678 RSF1Q96T23 1441 aaPredicted RBP12.22□□□□□ -0.45
HERPUD1-209ENST00000564678 PRKCSHP14314 528 aaPredicted RBP12.18□□□□□ -0.46
HERPUD1-209ENST00000564678 CECR2Q9BXF3 1484 aa12.08□□□□□ -0.48
HERPUD1-209ENST00000564678 MROH2BQ7Z745 1585 aa12.05□□□□□ -0.48
HERPUD1-209ENST00000564678 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
HERPUD1-209ENST00000564678 PPP4R3CPQ6ZMV5 832 aa12.03□□□□□ -0.48
HERPUD1-209ENST00000564678 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
HERPUD1-209ENST00000564678 NPM3O75607 178 aaKnown RBP11.99□□□□□ -0.49
HERPUD1-209ENST00000564678 WIZO95785 1651 aa11.95□□□□□ -0.5
HERPUD1-209ENST00000564678 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
HERPUD1-209ENST00000564678 BICRAQ9NZM4 1560 aa11.91□□□□□ -0.5
HERPUD1-209ENST00000564678 DAXXQ9UER7 740 aaPredicted RBP11.89□□□□□ -0.51
HERPUD1-209ENST00000564678 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
HERPUD1-209ENST00000564678 TRIM41Q8WV44 630 aa11.84□□□□□ -0.51
HERPUD1-209ENST00000564678 TAOK2Q9UL54 1235 aa11.83□□□□□ -0.52
HERPUD1-209ENST00000564678 PABPN1Q86U42 306 aaKnown RBP eCLIP11.82□□□□□ -0.52
HERPUD1-209ENST00000564678 FKBP8Q14318 412 aa11.79□□□□□ -0.52
HERPUD1-209ENST00000564678 PEG3Q9GZU2 1588 aa11.79□□□□□ -0.52
HERPUD1-209ENST00000564678 PLCB2Q00722 1185 aa11.77□□□□□ -0.53
HERPUD1-209ENST00000564678 CCDC88BA6NC98 1476 aa11.75□□□□□ -0.53
HERPUD1-209ENST00000564678 LOC105371045A0A1W2PR82 267 aa11.74□□□□□ -0.53
HERPUD1-209ENST00000564678 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
HERPUD1-209ENST00000564678 EIF4G1Q04637 1599 aaKnown RBP11.74□□□□□ -0.53
HERPUD1-209ENST00000564678 BCANQ96GW7 911 aa11.72□□□□□ -0.53
HERPUD1-209ENST00000564678 TIMELESSQ9UNS1 1208 aa11.7□□□□□ -0.54
HERPUD1-209ENST00000564678 FOXD4L1Q9NU39 408 aa11.69□□□□□ -0.54
HERPUD1-209ENST00000564678 ATAD2BQ9ULI0 1458 aa11.67□□□□□ -0.54
HERPUD1-209ENST00000564678 TPRNQ4KMQ1 711 aa11.66□□□□□ -0.54
HERPUD1-209ENST00000564678 HAP1P54257 671 aaPredicted RBP11.64□□□□□ -0.55
HERPUD1-209ENST00000564678 FOXD1Q16676 465 aa11.63□□□□□ -0.55
HERPUD1-209ENST00000564678 BAZ1BQ9UIG0 1483 aaKnown RBP11.61□□□□□ -0.55
HERPUD1-209ENST00000564678 FAM9AQ8IZU1 332 aaPredicted RBP11.58□□□□□ -0.56
HERPUD1-209ENST00000564678 ABCC8Q09428 1581 aa11.55□□□□□ -0.56
HERPUD1-209ENST00000564678 TULP1O00294 542 aaPredicted RBP11.55□□□□□ -0.56
HERPUD1-209ENST00000564678 NCAPD3P42695 1498 aa11.55□□□□□ -0.56
HERPUD1-209ENST00000564678 HMGXB3Q12766 1538 aa11.53□□□□□ -0.56
HERPUD1-209ENST00000564678 EEA1Q15075 1411 aa11.52□□□□□ -0.56
HERPUD1-209ENST00000564678 PCGF6Q9BYE7 350 aa11.52□□□□□ -0.57
HERPUD1-209ENST00000564678 ARXQ96QS3 562 aa11.51□□□□□ -0.57
HERPUD1-209ENST00000564678 WRNQ14191 1432 aaPredicted RBP eCLIP11.5□□□□□ -0.57
HERPUD1-209ENST00000564678 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
HERPUD1-209ENST00000564678 HRCP23327 699 aa11.44□□□□□ -0.58
HERPUD1-209ENST00000564678 SOGA1O94964 1423 aa11.43□□□□□ -0.58
HERPUD1-209ENST00000564678 SYNJ1O43426 1573 aa11.39□□□□□ -0.59
HERPUD1-209ENST00000564678 TNIKQ9UKE5 1360 aa11.39□□□□□ -0.59
HERPUD1-209ENST00000564678 CFTRP13569 1480 aa11.36□□□□□ -0.59
HERPUD1-209ENST00000564678 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
HERPUD1-209ENST00000564678 RUSC2Q8N2Y8 1516 aa11.35□□□□□ -0.59
HERPUD1-209ENST00000564678 VSIG10Q8N0Z9 540 aa11.34□□□□□ -0.59
HERPUD1-209ENST00000564678 GOLGA3Q08378 1498 aa11.34□□□□□ -0.59
HERPUD1-209ENST00000564678 BIVM-ERCC5R4GMW8 1640 aa11.33□□□□□ -0.6
HERPUD1-209ENST00000564678 KDM2AQ9Y2K7 1162 aa11.33□□□□□ -0.6
HERPUD1-209ENST00000564678 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
HERPUD1-209ENST00000564678 CNKSR2Q8WXI2 1034 aa11.31□□□□□ -0.6
HERPUD1-209ENST00000564678 KIF21BO75037 1637 aa11.31□□□□□ -0.6
HERPUD1-209ENST00000564678 CEP162Q5TB80 1403 aa11.3□□□□□ -0.6
HERPUD1-209ENST00000564678 UBTFP17480 764 aaKnown RBP11.29□□□□□ -0.6
HERPUD1-209ENST00000564678 CC2D2AQ9P2K1 1620 aa11.28□□□□□ -0.6
HERPUD1-209ENST00000564678 PRDM2Q13029 1718 aa11.28□□□□□ -0.6
HERPUD1-209ENST00000564678 CADPSQ9ULU8 1353 aa11.27□□□□□ -0.6
HERPUD1-209ENST00000564678 FBLN2P98095 1184 aa11.27□□□□□ -0.61
HERPUD1-209ENST00000564678 GTF3C3Q9Y5Q9 886 aa11.26□□□□□ -0.61
HERPUD1-209ENST00000564678 CUX1P39880 1505 aa11.24□□□□□ -0.61
HERPUD1-209ENST00000564678 ZEB1P37275 1124 aaPredicted RBP11.22□□□□□ -0.61
HERPUD1-209ENST00000564678 PIAS4Q8N2W9 510 aaPredicted RBP11.22□□□□□ -0.61
HERPUD1-209ENST00000564678 HOMEZQ8IX15 550 aa11.21□□□□□ -0.62
HERPUD1-209ENST00000564678 ERICH3Q5RHP9 1530 aa11.19□□□□□ -0.62
HERPUD1-209ENST00000564678 KIF27Q86VH2 1401 aa11.19□□□□□ -0.62
HERPUD1-209ENST00000564678 PRXQ9BXM0 1461 aa11.18□□□□□ -0.62
HERPUD1-209ENST00000564678 RAPGEF2Q9Y4G8 1499 aa11.18□□□□□ -0.62
HERPUD1-209ENST00000564678 CLIP1P30622 1438 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms