RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 FBLN2P98095 1184 aa20.62■□□□□ 0.89
CLK3-214ENST00000564096 CHD1O14646 1710 aa20.61■□□□□ 0.89
CLK3-214ENST00000564096 NUP160Q12769 1436 aa20.59■□□□□ 0.89
CLK3-214ENST00000564096 CEP162Q5TB80 1403 aa20.58■□□□□ 0.88
CLK3-214ENST00000564096 IQGAP2Q13576 1575 aa20.56■□□□□ 0.88
CLK3-214ENST00000564096 CEP170Q5SW79 1584 aa20.56■□□□□ 0.88
CLK3-214ENST00000564096 KIAA0586Q9BVV6 1533 aa20.55■□□□□ 0.88
CLK3-214ENST00000564096 CLIP1P30622 1438 aa20.53■□□□□ 0.88
CLK3-214ENST00000564096 EFCAB5A4FU69 1503 aa20.5■□□□□ 0.87
CLK3-214ENST00000564096 UGGT2Q9NYU1 1516 aa20.44■□□□□ 0.86
CLK3-214ENST00000564096 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
CLK3-214ENST00000564096 RANGAP1P46060 587 aaPredicted RBP20.42■□□□□ 0.86
CLK3-214ENST00000564096 SAMD9Q5K651 1589 aa20.41■□□□□ 0.86
CLK3-214ENST00000564096 ARHGAP35Q9NRY4 1499 aa20.4■□□□□ 0.86
CLK3-214ENST00000564096 CARMIL2Q6F5E8 1435 aa20.36■□□□□ 0.85
CLK3-214ENST00000564096 KIAA0556O60303 1618 aa20.35■□□□□ 0.85
CLK3-214ENST00000564096 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
CLK3-214ENST00000564096 OSCARQ8IYS5 282 aa20.34■□□□□ 0.85
CLK3-214ENST00000564096 ARAP1Q96P48 1450 aa20.34■□□□□ 0.85
CLK3-214ENST00000564096 JPH4Q96JJ6 628 aa20.31■□□□□ 0.84
CLK3-214ENST00000564096 FHOD3Q2V2M9 1422 aa20.3■□□□□ 0.84
CLK3-214ENST00000564096 VPS8Q8N3P4 1428 aa20.3■□□□□ 0.84
CLK3-214ENST00000564096 DISP1Q96F81 1524 aa20.3■□□□□ 0.84
CLK3-214ENST00000564096 FMN1Q68DA7 1419 aa20.28■□□□□ 0.84
CLK3-214ENST00000564096 PRG4Q92954 1404 aaPredicted RBP20.28■□□□□ 0.84
CLK3-214ENST00000564096 P3H3Q8IVL6 736 aa20.23■□□□□ 0.83
CLK3-214ENST00000564096 FYCO1Q9BQS8 1478 aa20.18■□□□□ 0.82
CLK3-214ENST00000564096 PCF11O94913 1555 aaKnown RBP20.17■□□□□ 0.82
CLK3-214ENST00000564096 CASKIN1Q8WXD9 1431 aa20.15■□□□□ 0.82
CLK3-214ENST00000564096 HECW1Q76N89 1606 aa20.13■□□□□ 0.81
CLK3-214ENST00000564096 ERCC6L2Q5T890 1561 aa20.12■□□□□ 0.81
CLK3-214ENST00000564096 PTPRGP23470 1445 aa20.12■□□□□ 0.81
CLK3-214ENST00000564096 APLP2Q06481 763 aa20.1■□□□□ 0.81
CLK3-214ENST00000564096 RAPGEF6Q8TEU7 1601 aa20.09■□□□□ 0.81
CLK3-214ENST00000564096 CCDC18Q5T9S5 1454 aa20.07■□□□□ 0.8
CLK3-214ENST00000564096 TTBK1Q5TCY1 1321 aaPredicted RBP20.06■□□□□ 0.8
CLK3-214ENST00000564096 ARHGEF11O15085 1522 aa20.06■□□□□ 0.8
CLK3-214ENST00000564096 ABCA8O94911 1581 aa20.05■□□□□ 0.8
CLK3-214ENST00000564096 MAP3K1Q13233 1512 aa20.04■□□□□ 0.8
CLK3-214ENST00000564096 PLB1Q6P1J6 1458 aa20.04■□□□□ 0.8
CLK3-214ENST00000564096 CFAP43Q8NDM7 1665 aa20.03■□□□□ 0.8
CLK3-214ENST00000564096 UACAQ9BZF9 1416 aa20.02■□□□□ 0.8
CLK3-214ENST00000564096 ATP1B4Q9UN42 357 aaPredicted RBP20.02■□□□□ 0.8
CLK3-214ENST00000564096 TIAM1Q13009 1591 aa20.01■□□□□ 0.79
CLK3-214ENST00000564096 ABCC2Q92887 1545 aa20.01■□□□□ 0.79
CLK3-214ENST00000564096 NUP153P49790 1475 aaKnown RBP20■□□□□ 0.79
CLK3-214ENST00000564096 EPRSP07814 1512 aaKnown RBP19.98■□□□□ 0.79
CLK3-214ENST00000564096 UHRF1BP1LA0JNW5 1464 aa19.98■□□□□ 0.79
CLK3-214ENST00000564096 RIMBP3CA6NJZ7 1639 aa19.97■□□□□ 0.79
CLK3-214ENST00000564096 RIMBP3BA6NNM3 1639 aa19.97■□□□□ 0.79
CLK3-214ENST00000564096 RIMBP3Q9UFD9 1639 aa19.97■□□□□ 0.79
CLK3-214ENST00000564096 CDK13Q14004 1512 aaKnown RBP19.92■□□□□ 0.78
CLK3-214ENST00000564096 EHBP1L1Q8N3D4 1523 aa19.92■□□□□ 0.78
CLK3-214ENST00000564096 LRRIQ1Q96JM4 1722 aa19.9■□□□□ 0.78
CLK3-214ENST00000564096 LRRC9Q6ZRR7 1453 aa19.9■□□□□ 0.78
CLK3-214ENST00000564096 ADCY10Q96PN6 1610 aa19.88■□□□□ 0.77
CLK3-214ENST00000564096 MTUS2Q5JR59 1369 aa19.88■□□□□ 0.77
CLK3-214ENST00000564096 CDK11AQ9UQ88 783 aaPredicted RBP19.88■□□□□ 0.77
CLK3-214ENST00000564096 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.87■□□□□ 0.77
CLK3-214ENST00000564096 HNRNPUL2Q1KMD3 747 aaKnown RBP19.87■□□□□ 0.77
CLK3-214ENST00000564096 KDM5BQ9UGL1 1544 aa19.86■□□□□ 0.77
CLK3-214ENST00000564096 ARID3CA6NKF2 412 aa19.85■□□□□ 0.77
CLK3-214ENST00000564096 ATP10BO94823 1461 aa19.85■□□□□ 0.77
CLK3-214ENST00000564096 ZCCHC11Q5TAX3 1644 aaKnown RBP19.83■□□□□ 0.76
CLK3-214ENST00000564096 TROQ12816 1431 aaPredicted RBP19.81■□□□□ 0.76
CLK3-214ENST00000564096 SUPT6HQ7KZ85 1726 aaKnown RBP19.79■□□□□ 0.76
CLK3-214ENST00000564096 KANK4Q5T7N3 995 aaPredicted RBP19.79■□□□□ 0.76
CLK3-214ENST00000564096 MAGI3Q5TCQ9 1506 aa19.78■□□□□ 0.76
CLK3-214ENST00000564096 NPM1P06748 294 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLK3-214ENST00000564096 PPARGC1BQ86YN6 1023 aaKnown RBP19.77■□□□□ 0.76
CLK3-214ENST00000564096 KIF14Q15058 1648 aa19.76■□□□□ 0.75
CLK3-214ENST00000564096 PLEKHD1A6NEE1 506 aa19.76■□□□□ 0.75
CLK3-214ENST00000564096 CYB5RLQ6IPT4 315 aa19.76■□□□□ 0.75
CLK3-214ENST00000564096 NCOA2Q15596 1464 aa19.73■□□□□ 0.75
CLK3-214ENST00000564096 WDR7Q9Y4E6 1490 aa19.72■□□□□ 0.75
CLK3-214ENST00000564096 MAPKBP1O60336 1514 aa19.69■□□□□ 0.74
CLK3-214ENST00000564096 ASXL2Q76L83 1435 aa19.68■□□□□ 0.74
CLK3-214ENST00000564096 MYOM3Q5VTT5 1437 aa19.65■□□□□ 0.74
CLK3-214ENST00000564096 PHLDB1Q86UU1 1377 aa19.64■□□□□ 0.73
CLK3-214ENST00000564096 CCNB3Q8WWL7 1395 aa19.64■□□□□ 0.73
CLK3-214ENST00000564096 ITSN2Q9NZM3 1697 aa19.64■□□□□ 0.73
CLK3-214ENST00000564096 ABCC10Q5T3U5 1492 aa19.61■□□□□ 0.73
CLK3-214ENST00000564096 TRIM26Q12899 539 aaPredicted RBP19.61■□□□□ 0.73
CLK3-214ENST00000564096 RRBP1Q9P2E9 1410 aaKnown RBP19.6■□□□□ 0.73
CLK3-214ENST00000564096 FGD6Q6ZV73 1430 aa19.59■□□□□ 0.73
CLK3-214ENST00000564096 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.59■□□□□ 0.733e-12■□□□□ 9.1
CLK3-214ENST00000564096 MIA2Q96PC5 1412 aa19.59■□□□□ 0.73
CLK3-214ENST00000564096 TTC37Q6PGP7 1564 aa19.58■□□□□ 0.73
CLK3-214ENST00000564096 PREX2Q70Z35 1606 aa19.55■□□□□ 0.72
CLK3-214ENST00000564096 ABCA9Q8IUA7 1624 aa19.55■□□□□ 0.72
CLK3-214ENST00000564096 KCNH8Q96L42 1107 aa19.55■□□□□ 0.72
CLK3-214ENST00000564096 GPATCH8Q9UKJ3 1502 aaKnown RBP19.55■□□□□ 0.72
CLK3-214ENST00000564096 MYO5CQ9NQX4 1742 aa19.54■□□□□ 0.72
CLK3-214ENST00000564096 ARAP3Q8WWN8 1544 aa19.53■□□□□ 0.72
CLK3-214ENST00000564096 PHF23Q9BUL5 403 aaPredicted RBP19.53■□□□□ 0.72
CLK3-214ENST00000564096 PTPN23Q9H3S7 1636 aa19.52■□□□□ 0.72
CLK3-214ENST00000564096 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.52■□□□□ 0.72
CLK3-214ENST00000564096 CDC42BPAQ5VT25 1732 aa19.51■□□□□ 0.71
CLK3-214ENST00000564096 TCOF1Q13428 1488 aaKnown RBP19.51■□□□□ 0.71
CLK3-214ENST00000564096 ARHGAP5Q13017 1502 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms