RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RUSC2Q8N2Y8 1516 aa30■■■□□ 2.39
VPS9D1-203ENST00000563798 CUL7Q14999 1698 aa29.97■■■□□ 2.39
VPS9D1-203ENST00000563798 KIAA0586Q9BVV6 1533 aa29.91■■■□□ 2.38
VPS9D1-203ENST00000563798 CARMIL1Q5VZK9 1371 aa29.84■■■□□ 2.37
VPS9D1-203ENST00000563798 ADCY10Q96PN6 1610 aa29.62■■■□□ 2.33
VPS9D1-203ENST00000563798 MAPKBP1O60336 1514 aa29.61■■■□□ 2.33
VPS9D1-203ENST00000563798 NPM1P06748 294 aaKnown RBP eCLIP29.6■■■□□ 2.33
VPS9D1-203ENST00000563798 IQGAP2Q13576 1575 aa29.6■■■□□ 2.33
VPS9D1-203ENST00000563798 RAPGEF2Q9Y4G8 1499 aa29.59■■■□□ 2.33
VPS9D1-203ENST00000563798 KIF13AQ9H1H9 1805 aa29.59■■■□□ 2.33
VPS9D1-203ENST00000563798 CARMIL2Q6F5E8 1435 aa29.58■■■□□ 2.33
VPS9D1-203ENST00000563798 PTPRGP23470 1445 aa29.57■■■□□ 2.32
VPS9D1-203ENST00000563798 ABCC10Q5T3U5 1492 aa29.55■■■□□ 2.32
VPS9D1-203ENST00000563798 TNIKQ9UKE5 1360 aa29.54■■■□□ 2.32
VPS9D1-203ENST00000563798 DISP1Q96F81 1524 aa29.47■■■□□ 2.31
VPS9D1-203ENST00000563798 UGGT2Q9NYU1 1516 aa29.46■■■□□ 2.31
VPS9D1-203ENST00000563798 FAM69CQ0P6D2 419 aa29.46■■■□□ 2.31
VPS9D1-203ENST00000563798 DIP2BQ9P265 1576 aa29.45■■■□□ 2.31
VPS9D1-203ENST00000563798 UHRF1BP1LA0JNW5 1464 aa29.42■■■□□ 2.3
VPS9D1-203ENST00000563798 ABCC2Q92887 1545 aa29.4■■■□□ 2.3
VPS9D1-203ENST00000563798 PRXQ9BXM0 1461 aa29.36■■■□□ 2.29
VPS9D1-203ENST00000563798 UACAQ9BZF9 1416 aa29.36■■■□□ 2.29
VPS9D1-203ENST00000563798 TTBK1Q5TCY1 1321 aaPredicted RBP29.33■■■□□ 2.29
VPS9D1-203ENST00000563798 KIAA0556O60303 1618 aa29.32■■■□□ 2.28
VPS9D1-203ENST00000563798 CTTNBP2Q8WZ74 1663 aa29.29■■■□□ 2.28
VPS9D1-203ENST00000563798 PLB1Q6P1J6 1458 aa29.28■■■□□ 2.28
VPS9D1-203ENST00000563798 KDM5BQ9UGL1 1544 aa29.26■■■□□ 2.27
VPS9D1-203ENST00000563798 ASXL2Q76L83 1435 aa29.26■■■□□ 2.27
VPS9D1-203ENST00000563798 GOLGA3Q08378 1498 aa29.23■■■□□ 2.27
VPS9D1-203ENST00000563798 GLI2P10070 1586 aa29.22■■■□□ 2.27
VPS9D1-203ENST00000563798 AEBP2Q6ZN18 517 aaPredicted RBP29.15■■■□□ 2.26
VPS9D1-203ENST00000563798 CSRNP3Q8WYN3 585 aa29.14■■■□□ 2.26
VPS9D1-203ENST00000563798 ZCCHC11Q5TAX3 1644 aaKnown RBP29.12■■■□□ 2.25
VPS9D1-203ENST00000563798 TSPOAP1O95153 1857 aa29.12■■■□□ 2.25
VPS9D1-203ENST00000563798 KDM6BO15054 1643 aa29.12■■■□□ 2.25
VPS9D1-203ENST00000563798 EPRSP07814 1512 aaKnown RBP29.1■■■□□ 2.25
VPS9D1-203ENST00000563798 EEA1Q15075 1411 aa29.1■■■□□ 2.25
VPS9D1-203ENST00000563798 ABCA8O94911 1581 aa29.08■■■□□ 2.25
VPS9D1-203ENST00000563798 PPRC1Q5VV67 1664 aaKnown RBP29.06■■■□□ 2.24
VPS9D1-203ENST00000563798 MAP3K4Q9Y6R4 1608 aa29.02■■■□□ 2.24
VPS9D1-203ENST00000563798 WDR7Q9Y4E6 1490 aa29.01■■■□□ 2.23
VPS9D1-203ENST00000563798 SAMD9Q5K651 1589 aa28.94■■■□□ 2.22
VPS9D1-203ENST00000563798 TEX14Q8IWB6 1497 aa28.93■■■□□ 2.22
VPS9D1-203ENST00000563798 FAM9AQ8IZU1 332 aaPredicted RBP28.91■■■□□ 2.22
VPS9D1-203ENST00000563798 COL17A1Q9UMD9 1497 aaPredicted RBP28.87■■■□□ 2.21
VPS9D1-203ENST00000563798 P3H3Q8IVL6 736 aa28.86■■■□□ 2.21
VPS9D1-203ENST00000563798 MAGI3Q5TCQ9 1506 aa28.84■■■□□ 2.21
VPS9D1-203ENST00000563798 ATP10BO94823 1461 aa28.83■■■□□ 2.21
VPS9D1-203ENST00000563798 CFAP43Q8NDM7 1665 aa28.82■■■□□ 2.2
VPS9D1-203ENST00000563798 KIF21BO75037 1637 aa28.81■■■□□ 2.2
VPS9D1-203ENST00000563798 CD109Q6YHK3 1445 aa28.81■■■□□ 2.2
VPS9D1-203ENST00000563798 KDM4FA0A1W2PPD8 638 aa28.79■■■□□ 2.2
VPS9D1-203ENST00000563798 KCNH8Q96L42 1107 aa28.79■■■□□ 2.2
VPS9D1-203ENST00000563798 RAPGEF6Q8TEU7 1601 aa28.76■■■□□ 2.19
VPS9D1-203ENST00000563798 CHIC1Q5VXU3 224 aa28.73■■■□□ 2.19
VPS9D1-203ENST00000563798 EFCAB5A4FU69 1503 aa28.69■■■□□ 2.18
VPS9D1-203ENST00000563798 NUP153P49790 1475 aaKnown RBP28.69■■■□□ 2.18
VPS9D1-203ENST00000563798 FHOD3Q2V2M9 1422 aa28.69■■■□□ 2.18
VPS9D1-203ENST00000563798 ARID3CA6NKF2 412 aa28.68■■■□□ 2.18
VPS9D1-203ENST00000563798 ABCA9Q8IUA7 1624 aa28.65■■■□□ 2.18
VPS9D1-203ENST00000563798 RANGAP1P46060 587 aaPredicted RBP28.62■■■□□ 2.17
VPS9D1-203ENST00000563798 ARAP3Q8WWN8 1544 aa28.61■■■□□ 2.17
VPS9D1-203ENST00000563798 PHLDB1Q86UU1 1377 aa28.61■■■□□ 2.17
VPS9D1-203ENST00000563798 ADGRL1O94910 1474 aa28.58■■■□□ 2.17
VPS9D1-203ENST00000563798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
VPS9D1-203ENST00000563798 HNRNPUL2Q1KMD3 747 aaKnown RBP28.55■■■□□ 2.16
VPS9D1-203ENST00000563798 NEO1Q92859 1461 aa28.52■■■□□ 2.16
VPS9D1-203ENST00000563798 UBTFP17480 764 aaKnown RBP28.51■■■□□ 2.15
VPS9D1-203ENST00000563798 PLEKHD1A6NEE1 506 aa28.5■■■□□ 2.15
VPS9D1-203ENST00000563798 ARHGAP35Q9NRY4 1499 aa28.44■■■□□ 2.14
VPS9D1-203ENST00000563798 FMN1Q68DA7 1419 aa28.43■■■□□ 2.14
VPS9D1-203ENST00000563798 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.38■■■□□ 2.13
VPS9D1-203ENST00000563798 EHMT2Q96KQ7 1210 aa28.37■■■□□ 2.13
VPS9D1-203ENST00000563798 CDK13Q14004 1512 aaKnown RBP28.36■■■□□ 2.13
VPS9D1-203ENST00000563798 RAPGEF3O95398 923 aa28.35■■■□□ 2.13
VPS9D1-203ENST00000563798 FRMPD1Q5SYB0 1578 aa28.33■■■□□ 2.12
VPS9D1-203ENST00000563798 HECW1Q76N89 1606 aa28.32■■■□□ 2.12
VPS9D1-203ENST00000563798 TTC37Q6PGP7 1564 aa28.3■■■□□ 2.12
VPS9D1-203ENST00000563798 FANCAO15360 1455 aa28.3■■■□□ 2.12
VPS9D1-203ENST00000563798 AKNAQ7Z591 1439 aa28.3■■■□□ 2.12
VPS9D1-203ENST00000563798 CFAP74Q9C0B2 1584 aa28.29■■■□□ 2.12
VPS9D1-203ENST00000563798 DENND4BO75064 1496 aaPredicted RBP28.27■■■□□ 2.12
VPS9D1-203ENST00000563798 CDK11AQ9UQ88 783 aaPredicted RBP28.24■■■□□ 2.11
VPS9D1-203ENST00000563798 PLCH2O75038 1416 aa28.24■■■□□ 2.11
VPS9D1-203ENST00000563798 RICTORQ6R327 1708 aa28.23■■■□□ 2.11
VPS9D1-203ENST00000563798 ATP1B4Q9UN42 357 aaPredicted RBP28.21■■■□□ 2.11
VPS9D1-203ENST00000563798 ZMYM4Q5VZL5 1548 aa28.18■■■□□ 2.1
VPS9D1-203ENST00000563798 TROQ12816 1431 aaPredicted RBP28.18■■■□□ 2.1
VPS9D1-203ENST00000563798 ADAMTSL3P82987 1691 aa28.17■■■□□ 2.1
VPS9D1-203ENST00000563798 ARHGEF40Q8TER5 1519 aa28.17■■■□□ 2.1
VPS9D1-203ENST00000563798 CASKIN1Q8WXD9 1431 aa28.15■■■□□ 2.1
VPS9D1-203ENST00000563798 MAGI2Q86UL8 1455 aa28.14■■■□□ 2.09
VPS9D1-203ENST00000563798 LRRIQ1Q96JM4 1722 aa28.13■■■□□ 2.09
VPS9D1-203ENST00000563798 HECW2Q9P2P5 1572 aa28.11■■■□□ 2.09
VPS9D1-203ENST00000563798 KIF14Q15058 1648 aa28.11■■■□□ 2.09
VPS9D1-203ENST00000563798 EFCAB2Q5VUJ9 269 aa28.11■■■□□ 2.09
VPS9D1-203ENST00000563798 CLIP1P30622 1438 aa28.1■■■□□ 2.09
VPS9D1-203ENST00000563798 SCAPERQ9BY12 1400 aa28.1■■■□□ 2.09
VPS9D1-203ENST00000563798 BCORL1Q5H9F3 1711 aa28.1■■■□□ 2.09
VPS9D1-203ENST00000563798 POGZQ7Z3K3 1410 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms