RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 NISCHQ9Y2I1 1504 aa43.01■■■■■ 4.48
VPS9D1-203ENST00000563798 CCDC180Q9P1Z9 1646 aa38.51■■■■□ 3.76
VPS9D1-203ENST00000563798 ABCC9O60706 1549 aa38.22■■■■□ 3.71
VPS9D1-203ENST00000563798 RB1CC1Q8TDY2 1594 aa36.53■■■■□ 3.44
VPS9D1-203ENST00000563798 NACADO15069 1562 aa36.37■■■■□ 3.41
VPS9D1-203ENST00000563798 DCAF8L2P0C7V8 631 aa36.05■■■■□ 3.36
VPS9D1-203ENST00000563798 MYO15BQ96JP2 1530 aa36.03■■■■□ 3.36
VPS9D1-203ENST00000563798 DNAJC5BQ9UF47 199 aa35.71■■■■□ 3.31
VPS9D1-203ENST00000563798 ZCCHC6Q5VYS8 1495 aaKnown RBP35.69■■■■□ 3.3
VPS9D1-203ENST00000563798 UNC13AQ9UPW8 1703 aa35.64■■■■□ 3.3
VPS9D1-203ENST00000563798 DCAF1Q9Y4B6 1507 aa35.62■■■■□ 3.29
VPS9D1-203ENST00000563798 PABPN1Q86U42 306 aaKnown RBP eCLIP35.59■■■■□ 3.29
VPS9D1-203ENST00000563798 BICRAQ9NZM4 1560 aa35.47■■■■□ 3.27
VPS9D1-203ENST00000563798 SHROOM4Q9ULL8 1493 aa35.12■■■■□ 3.21
VPS9D1-203ENST00000563798 SCRIBQ14160 1630 aa34.99■■■■□ 3.19
VPS9D1-203ENST00000563798 EIF4G1Q04637 1599 aaKnown RBP34.57■■■■□ 3.12
VPS9D1-203ENST00000563798 CC2D2AQ9P2K1 1620 aa34.56■■■■□ 3.12
VPS9D1-203ENST00000563798 CECR2Q9BXF3 1484 aa34.45■■■■□ 3.1
VPS9D1-203ENST00000563798 NCAPD3P42695 1498 aa33.61■■■□□ 2.97
VPS9D1-203ENST00000563798 ATAD2BQ9ULI0 1458 aa33.49■■■□□ 2.95
VPS9D1-203ENST00000563798 SMARCA4P51532 1647 aa33.47■■■□□ 2.95
VPS9D1-203ENST00000563798 SMARCA2P51531 1590 aa33.4■■■□□ 2.94
VPS9D1-203ENST00000563798 BAZ1AQ9NRL2 1556 aaPredicted RBP33.37■■■□□ 2.93
VPS9D1-203ENST00000563798 HMGXB3Q12766 1538 aa33.35■■■□□ 2.93
VPS9D1-203ENST00000563798 PEG3Q9GZU2 1588 aa33.23■■■□□ 2.91
VPS9D1-203ENST00000563798 BAZ1BQ9UIG0 1483 aaKnown RBP33.13■■■□□ 2.89
VPS9D1-203ENST00000563798 MROH2BQ7Z745 1585 aa33.1■■■□□ 2.89
VPS9D1-203ENST00000563798 ERCC6Q03468 1493 aa32.97■■■□□ 2.87
VPS9D1-203ENST00000563798 CUX2O14529 1486 aa32.95■■■□□ 2.87
VPS9D1-203ENST00000563798 NESP48681 1621 aa32.89■■■□□ 2.86
VPS9D1-203ENST00000563798 LAMC3Q9Y6N6 1575 aa32.77■■■□□ 2.84
VPS9D1-203ENST00000563798 DNAJC5Q9H3Z4 198 aa32.69■■■□□ 2.82
VPS9D1-203ENST00000563798 WIZO95785 1651 aa32.67■■■□□ 2.82
VPS9D1-203ENST00000563798 PDS5BQ9NTI5 1447 aa32.57■■■□□ 2.8
VPS9D1-203ENST00000563798 THOC2Q8NI27 1593 aaKnown RBP32.56■■■□□ 2.8
VPS9D1-203ENST00000563798 CADPSQ9ULU8 1353 aa32.56■■■□□ 2.8
VPS9D1-203ENST00000563798 RSF1Q96T23 1441 aaPredicted RBP32.52■■■□□ 2.8
VPS9D1-203ENST00000563798 KIF21AQ7Z4S6 1674 aa32.46■■■□□ 2.79
VPS9D1-203ENST00000563798 TOP2AP11388 1531 aaKnown RBP32.34■■■□□ 2.77
VPS9D1-203ENST00000563798 MRC2Q9UBG0 1479 aa32.26■■■□□ 2.75
VPS9D1-203ENST00000563798 CFTRP13569 1480 aa32.24■■■□□ 2.75
VPS9D1-203ENST00000563798 WDR62O43379 1518 aa32.2■■■□□ 2.74
VPS9D1-203ENST00000563798 CEP164Q9UPV0 1460 aa32.16■■■□□ 2.74
VPS9D1-203ENST00000563798 FANCD2Q9BXW9 1451 aa32.15■■■□□ 2.74
VPS9D1-203ENST00000563798 CCDC88BA6NC98 1476 aa31.97■■■□□ 2.71
VPS9D1-203ENST00000563798 URB2Q14146 1524 aaKnown RBP31.87■■■□□ 2.69
VPS9D1-203ENST00000563798 PRDM2Q13029 1718 aa31.86■■■□□ 2.69
VPS9D1-203ENST00000563798 ABCC8Q09428 1581 aa31.58■■■□□ 2.65
VPS9D1-203ENST00000563798 TOPBP1Q92547 1522 aa31.57■■■□□ 2.64
VPS9D1-203ENST00000563798 IFT140Q96RY7 1462 aa31.55■■■□□ 2.64
VPS9D1-203ENST00000563798 DNMBPQ6XZF7 1577 aa31.47■■■□□ 2.63
VPS9D1-203ENST00000563798 OSCARQ8IYS5 282 aa31.45■■■□□ 2.63
VPS9D1-203ENST00000563798 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
VPS9D1-203ENST00000563798 TARBP1Q13395 1621 aaKnown RBP31.29■■■□□ 2.6
VPS9D1-203ENST00000563798 POLA1P09884 1462 aaPredicted RBP31.27■■■□□ 2.6
VPS9D1-203ENST00000563798 EIF4G3O43432 1585 aaKnown RBP31.26■■■□□ 2.59
VPS9D1-203ENST00000563798 TRIM41Q8WV44 630 aa31.19■■■□□ 2.58
VPS9D1-203ENST00000563798 AQRO60306 1485 aaKnown RBP eCLIP31.16■■■□□ 2.58
VPS9D1-203ENST00000563798 SOGA1O94964 1423 aa31.12■■■□□ 2.57
VPS9D1-203ENST00000563798 RAD54L2Q9Y4B4 1467 aa31.1■■■□□ 2.57
VPS9D1-203ENST00000563798 SUPT5HO00267 1087 aaKnown RBP31.1■■■□□ 2.57
VPS9D1-203ENST00000563798 CUX1P39880 1505 aa31.08■■■□□ 2.57
VPS9D1-203ENST00000563798 FGD5Q6ZNL6 1462 aa31.08■■■□□ 2.57
VPS9D1-203ENST00000563798 WDR97A6NE52 1622 aa31.04■■■□□ 2.56
VPS9D1-203ENST00000563798 TDRD9Q8NDG6 1382 aaKnown RBP31■■■□□ 2.55
VPS9D1-203ENST00000563798 RIMBP3CA6NJZ7 1639 aa30.97■■■□□ 2.55
VPS9D1-203ENST00000563798 RIMBP3BA6NNM3 1639 aa30.97■■■□□ 2.55
VPS9D1-203ENST00000563798 RIMBP3Q9UFD9 1639 aa30.97■■■□□ 2.55
VPS9D1-203ENST00000563798 CHD1O14646 1710 aa30.95■■■□□ 2.54
VPS9D1-203ENST00000563798 ARHGEF11O15085 1522 aa30.92■■■□□ 2.54
VPS9D1-203ENST00000563798 GRIN2BQ13224 1484 aa30.84■■■□□ 2.53
VPS9D1-203ENST00000563798 SNAPC4Q5SXM2 1469 aa30.84■■■□□ 2.53
VPS9D1-203ENST00000563798 FBLN2P98095 1184 aa30.84■■■□□ 2.53
VPS9D1-203ENST00000563798 MAGI1Q96QZ7 1491 aaPredicted RBP30.83■■■□□ 2.53
VPS9D1-203ENST00000563798 ABCA10Q8WWZ4 1543 aa30.79■■■□□ 2.52
VPS9D1-203ENST00000563798 GAPVD1Q14C86 1478 aa30.75■■■□□ 2.51
VPS9D1-203ENST00000563798 SYNJ2O15056 1496 aa30.72■■■□□ 2.51
VPS9D1-203ENST00000563798 CHMP7Q8WUX9 453 aaPredicted RBP30.72■■■□□ 2.51
VPS9D1-203ENST00000563798 ABCA5Q8WWZ7 1642 aa30.69■■■□□ 2.5
VPS9D1-203ENST00000563798 CLASP1Q7Z460 1538 aa30.69■■■□□ 2.5
VPS9D1-203ENST00000563798 WRNQ14191 1432 aaPredicted RBP eCLIP30.68■■■□□ 2.5
VPS9D1-203ENST00000563798 TOP2BQ02880 1626 aa30.66■■■□□ 2.5
VPS9D1-203ENST00000563798 BIVM-ERCC5R4GMW8 1640 aa30.66■■■□□ 2.5
VPS9D1-203ENST00000563798 PBRM1Q86U86 1689 aa30.66■■■□□ 2.5
VPS9D1-203ENST00000563798 SYNJ1O43426 1573 aa30.66■■■□□ 2.5
VPS9D1-203ENST00000563798 CYB5RLQ6IPT4 315 aa30.64■■■□□ 2.5
VPS9D1-203ENST00000563798 ARAP1Q96P48 1450 aa30.63■■■□□ 2.49
VPS9D1-203ENST00000563798 GRIN2AQ12879 1464 aa30.44■■■□□ 2.46
VPS9D1-203ENST00000563798 ADAMTS12P58397 1594 aa30.43■■■□□ 2.46
VPS9D1-203ENST00000563798 ERICH3Q5RHP9 1530 aa30.41■■■□□ 2.46
VPS9D1-203ENST00000563798 FHAD1B1AJZ9 1412 aa30.39■■■□□ 2.46
VPS9D1-203ENST00000563798 NUP160Q12769 1436 aa30.37■■■□□ 2.45
VPS9D1-203ENST00000563798 CEP170Q5SW79 1584 aa30.29■■■□□ 2.44
VPS9D1-203ENST00000563798 SHROOM2Q13796 1616 aa30.19■■■□□ 2.42
VPS9D1-203ENST00000563798 TRHP20396 242 aaPredicted RBP30.18■■■□□ 2.42
VPS9D1-203ENST00000563798 ERCC6L2Q5T890 1561 aa30.15■■■□□ 2.42
VPS9D1-203ENST00000563798 KIF27Q86VH2 1401 aa30.07■■■□□ 2.4
VPS9D1-203ENST00000563798 IGF1RP08069 1367 aa30.06■■■□□ 2.4
VPS9D1-203ENST00000563798 JPH4Q96JJ6 628 aa30.02■■■□□ 2.4
VPS9D1-203ENST00000563798 PRG4Q92954 1404 aaPredicted RBP30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms