RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PRG4Q92954 1404 aaPredicted RBP14.49□□□□□ -0.09
VPS39-207ENST00000563692 FAM9AQ8IZU1 332 aaPredicted RBP14.48□□□□□ -0.09
VPS39-207ENST00000563692 SHROOM2Q13796 1616 aa14.48□□□□□ -0.09
VPS39-207ENST00000563692 ERCC6L2Q5T890 1561 aa14.47□□□□□ -0.09
VPS39-207ENST00000563692 RUSC2Q8N2Y8 1516 aa14.45□□□□□ -0.1
VPS39-207ENST00000563692 KIAA0586Q9BVV6 1533 aa14.45□□□□□ -0.1
VPS39-207ENST00000563692 LOC105371045A0A1W2PR82 267 aa14.44□□□□□ -0.1
VPS39-207ENST00000563692 EEA1Q15075 1411 aa14.4□□□□□ -0.1
VPS39-207ENST00000563692 NPM1P06748 294 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS39-207ENST00000563692 RAPGEF2Q9Y4G8 1499 aa14.37□□□□□ -0.11
VPS39-207ENST00000563692 CARMIL2Q6F5E8 1435 aa14.35□□□□□ -0.11
VPS39-207ENST00000563692 CSRNP3Q8WYN3 585 aa14.34□□□□□ -0.11
VPS39-207ENST00000563692 IQGAP2Q13576 1575 aa14.32□□□□□ -0.12
VPS39-207ENST00000563692 TTBK1Q5TCY1 1321 aaPredicted RBP14.32□□□□□ -0.12
VPS39-207ENST00000563692 PTPRGP23470 1445 aa14.32□□□□□ -0.12
VPS39-207ENST00000563692 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
VPS39-207ENST00000563692 FAM69CQ0P6D2 419 aa14.24□□□□□ -0.13
VPS39-207ENST00000563692 EHMT2Q96KQ7 1210 aa14.24□□□□□ -0.13
VPS39-207ENST00000563692 ADCY10Q96PN6 1610 aa14.23□□□□□ -0.13
VPS39-207ENST00000563692 UGGT2Q9NYU1 1516 aa14.23□□□□□ -0.13
VPS39-207ENST00000563692 PRXQ9BXM0 1461 aa14.23□□□□□ -0.13
VPS39-207ENST00000563692 MAPKBP1O60336 1514 aa14.22□□□□□ -0.13
VPS39-207ENST00000563692 DISP1Q96F81 1524 aa14.2□□□□□ -0.14
VPS39-207ENST00000563692 ABCC10Q5T3U5 1492 aa14.2□□□□□ -0.14
VPS39-207ENST00000563692 UACAQ9BZF9 1416 aa14.2□□□□□ -0.14
VPS39-207ENST00000563692 GOLGA3Q08378 1498 aa14.19□□□□□ -0.14
VPS39-207ENST00000563692 UBTFP17480 764 aaKnown RBP14.18□□□□□ -0.14
VPS39-207ENST00000563692 ABCC2Q92887 1545 aa14.18□□□□□ -0.14
VPS39-207ENST00000563692 UHRF1BP1LA0JNW5 1464 aa14.17□□□□□ -0.14
VPS39-207ENST00000563692 KIAA0556O60303 1618 aa14.16□□□□□ -0.14
VPS39-207ENST00000563692 CTTNBP2Q8WZ74 1663 aa14.14□□□□□ -0.15
VPS39-207ENST00000563692 PLB1Q6P1J6 1458 aa14.14□□□□□ -0.15
VPS39-207ENST00000563692 DIP2BQ9P265 1576 aa14.13□□□□□ -0.15
VPS39-207ENST00000563692 KIF13AQ9H1H9 1805 aa14.12□□□□□ -0.15
VPS39-207ENST00000563692 ASXL2Q76L83 1435 aa14.12□□□□□ -0.15
VPS39-207ENST00000563692 KIF21BO75037 1637 aa14.1□□□□□ -0.15
VPS39-207ENST00000563692 KDM5BQ9UGL1 1544 aa14.09□□□□□ -0.15
VPS39-207ENST00000563692 P3H3Q8IVL6 736 aa14.07□□□□□ -0.16
VPS39-207ENST00000563692 RANGAP1P46060 587 aaPredicted RBP14.05□□□□□ -0.16
VPS39-207ENST00000563692 AEBP2Q6ZN18 517 aaPredicted RBP14.05□□□□□ -0.16
VPS39-207ENST00000563692 ZCCHC11Q5TAX3 1644 aaKnown RBP14.03□□□□□ -0.16
VPS39-207ENST00000563692 ABCA8O94911 1581 aa14.02□□□□□ -0.16
VPS39-207ENST00000563692 GLI2P10070 1586 aa14.02□□□□□ -0.16
VPS39-207ENST00000563692 EPRSP07814 1512 aaKnown RBP14.02□□□□□ -0.16
VPS39-207ENST00000563692 WDR7Q9Y4E6 1490 aa14.02□□□□□ -0.16
VPS39-207ENST00000563692 CEP162Q5TB80 1403 aa14.01□□□□□ -0.17
VPS39-207ENST00000563692 TSPOAP1O95153 1857 aa14□□□□□ -0.17
VPS39-207ENST00000563692 KDM6BO15054 1643 aa14□□□□□ -0.17
VPS39-207ENST00000563692 ARID3CA6NKF2 412 aa13.99□□□□□ -0.17
VPS39-207ENST00000563692 KCNH8Q96L42 1107 aa13.99□□□□□ -0.17
VPS39-207ENST00000563692 TEX14Q8IWB6 1497 aa13.99□□□□□ -0.17
VPS39-207ENST00000563692 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.98□□□□□ -0.17
VPS39-207ENST00000563692 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
VPS39-207ENST00000563692 SAMD9Q5K651 1589 aa13.97□□□□□ -0.17
VPS39-207ENST00000563692 FHOD3Q2V2M9 1422 aa13.95□□□□□ -0.18
VPS39-207ENST00000563692 EFCAB5A4FU69 1503 aa13.94□□□□□ -0.18
VPS39-207ENST00000563692 ATP10BO94823 1461 aa13.93□□□□□ -0.18
VPS39-207ENST00000563692 CLIP1P30622 1438 aa13.93□□□□□ -0.18
VPS39-207ENST00000563692 CD109Q6YHK3 1445 aa13.93□□□□□ -0.18
VPS39-207ENST00000563692 MAP3K4Q9Y6R4 1608 aa13.92□□□□□ -0.18
VPS39-207ENST00000563692 RAPGEF6Q8TEU7 1601 aa13.91□□□□□ -0.18
VPS39-207ENST00000563692 TRIM26Q12899 539 aaPredicted RBP13.89□□□□□ -0.19
VPS39-207ENST00000563692 MAGI3Q5TCQ9 1506 aa13.89□□□□□ -0.19
VPS39-207ENST00000563692 PPRC1Q5VV67 1664 aaKnown RBP13.88□□□□□ -0.19
VPS39-207ENST00000563692 PLEKHD1A6NEE1 506 aa13.88□□□□□ -0.19
VPS39-207ENST00000563692 NUP153P49790 1475 aaKnown RBP13.87□□□□□ -0.19
VPS39-207ENST00000563692 CFAP43Q8NDM7 1665 aa13.86□□□□□ -0.19
VPS39-207ENST00000563692 ATP1B4Q9UN42 357 aaPredicted RBP13.86□□□□□ -0.19
VPS39-207ENST00000563692 FMN1Q68DA7 1419 aa13.85□□□□□ -0.19
VPS39-207ENST00000563692 PCGF6Q9BYE7 350 aa13.85□□□□□ -0.19
VPS39-207ENST00000563692 APLP2Q06481 763 aa13.84□□□□□ -0.19
VPS39-207ENST00000563692 COL17A1Q9UMD9 1497 aaPredicted RBP13.83□□□□□ -0.2
VPS39-207ENST00000563692 PHLDB1Q86UU1 1377 aa13.82□□□□□ -0.2
VPS39-207ENST00000563692 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
VPS39-207ENST00000563692 CDK11AQ9UQ88 783 aaPredicted RBP13.8□□□□□ -0.2
VPS39-207ENST00000563692 VPS8Q8N3P4 1428 aa13.8□□□□□ -0.2
VPS39-207ENST00000563692 ABCA9Q8IUA7 1624 aa13.79□□□□□ -0.2
VPS39-207ENST00000563692 KDM4FA0A1W2PPD8 638 aa13.78□□□□□ -0.2
VPS39-207ENST00000563692 HECW1Q76N89 1606 aa13.76□□□□□ -0.21
VPS39-207ENST00000563692 ARAP3Q8WWN8 1544 aa13.76□□□□□ -0.21
VPS39-207ENST00000563692 NEO1Q92859 1461 aa13.76□□□□□ -0.21
VPS39-207ENST00000563692 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
VPS39-207ENST00000563692 CDK13Q14004 1512 aaKnown RBP13.74□□□□□ -0.21
VPS39-207ENST00000563692 ADGRL1O94910 1474 aa13.73□□□□□ -0.21
VPS39-207ENST00000563692 RAPGEF3O95398 923 aa13.72□□□□□ -0.21
VPS39-207ENST00000563692 FANCAO15360 1455 aa13.7□□□□□ -0.22
VPS39-207ENST00000563692 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS39-207ENST00000563692 AKNAQ7Z591 1439 aa13.69□□□□□ -0.22
VPS39-207ENST00000563692 DENND4BO75064 1496 aaPredicted RBP13.68□□□□□ -0.22
VPS39-207ENST00000563692 CFAP74Q9C0B2 1584 aa13.68□□□□□ -0.22
VPS39-207ENST00000563692 TROQ12816 1431 aaPredicted RBP13.68□□□□□ -0.22
VPS39-207ENST00000563692 CASKIN1Q8WXD9 1431 aa13.68□□□□□ -0.22
VPS39-207ENST00000563692 CCDC18Q5T9S5 1454 aa13.67□□□□□ -0.22
VPS39-207ENST00000563692 EFCAB2Q5VUJ9 269 aa13.67□□□□□ -0.22
VPS39-207ENST00000563692 PLCH2O75038 1416 aa13.66□□□□□ -0.22
VPS39-207ENST00000563692 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
VPS39-207ENST00000563692 ARID4BQ4LE39 1312 aaPredicted RBP13.64□□□□□ -0.23
VPS39-207ENST00000563692 KIF14Q15058 1648 aa13.64□□□□□ -0.23
VPS39-207ENST00000563692 FYCO1Q9BQS8 1478 aa13.64□□□□□ -0.23
VPS39-207ENST00000563692 PCF11O94913 1555 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms