RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 NISCHQ9Y2I1 1504 aa20.76■□□□□ 0.91
VPS39-207ENST00000563692 CCDC180Q9P1Z9 1646 aa18.51■□□□□ 0.55
VPS39-207ENST00000563692 ABCC9O60706 1549 aa18.38■□□□□ 0.53
VPS39-207ENST00000563692 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
VPS39-207ENST00000563692 DCAF8L2P0C7V8 631 aa17.56■□□□□ 0.4
VPS39-207ENST00000563692 NACADO15069 1562 aa17.51■□□□□ 0.39
VPS39-207ENST00000563692 MYO15BQ96JP2 1530 aa17.31■□□□□ 0.36
VPS39-207ENST00000563692 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
VPS39-207ENST00000563692 PABPN1Q86U42 306 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS39-207ENST00000563692 DCAF1Q9Y4B6 1507 aa17.16■□□□□ 0.34
VPS39-207ENST00000563692 UNC13AQ9UPW8 1703 aa17.03■□□□□ 0.32
VPS39-207ENST00000563692 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.32
VPS39-207ENST00000563692 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
VPS39-207ENST00000563692 SCRIBQ14160 1630 aa16.91■□□□□ 0.3
VPS39-207ENST00000563692 SHROOM4Q9ULL8 1493 aa16.87■□□□□ 0.29
VPS39-207ENST00000563692 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
VPS39-207ENST00000563692 CC2D2AQ9P2K1 1620 aa16.57■□□□□ 0.24
VPS39-207ENST00000563692 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
VPS39-207ENST00000563692 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
VPS39-207ENST00000563692 SMARCA4P51532 1647 aa16.13■□□□□ 0.17
VPS39-207ENST00000563692 ATAD2BQ9ULI0 1458 aa16.13■□□□□ 0.17
VPS39-207ENST00000563692 BAZ1AQ9NRL2 1556 aaPredicted RBP16.13■□□□□ 0.17
VPS39-207ENST00000563692 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
VPS39-207ENST00000563692 HMGXB3Q12766 1538 aa16.04■□□□□ 0.16
VPS39-207ENST00000563692 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
VPS39-207ENST00000563692 MROH2BQ7Z745 1585 aa15.97■□□□□ 0.15
VPS39-207ENST00000563692 PEG3Q9GZU2 1588 aa15.96■□□□□ 0.15
VPS39-207ENST00000563692 ERCC6Q03468 1493 aa15.92■□□□□ 0.14
VPS39-207ENST00000563692 NESP48681 1621 aa15.8■□□□□ 0.12
VPS39-207ENST00000563692 CUX2O14529 1486 aa15.78■□□□□ 0.12
VPS39-207ENST00000563692 WIZO95785 1651 aa15.77■□□□□ 0.12
VPS39-207ENST00000563692 LAMC3Q9Y6N6 1575 aa15.75■□□□□ 0.11
VPS39-207ENST00000563692 RSF1Q96T23 1441 aaPredicted RBP15.75■□□□□ 0.11
VPS39-207ENST00000563692 PDS5BQ9NTI5 1447 aa15.73■□□□□ 0.11
VPS39-207ENST00000563692 CADPSQ9ULU8 1353 aa15.71■□□□□ 0.11
VPS39-207ENST00000563692 SUPT5HO00267 1087 aaKnown RBP15.69■□□□□ 0.1
VPS39-207ENST00000563692 TOP2AP11388 1531 aaKnown RBP15.63■□□□□ 0.09
VPS39-207ENST00000563692 THOC2Q8NI27 1593 aaKnown RBP15.58■□□□□ 0.09
VPS39-207ENST00000563692 DNAJC5Q9H3Z4 198 aa15.56■□□□□ 0.08
VPS39-207ENST00000563692 KIF21AQ7Z4S6 1674 aa15.56■□□□□ 0.08
VPS39-207ENST00000563692 CFTRP13569 1480 aa15.54■□□□□ 0.08
VPS39-207ENST00000563692 MRC2Q9UBG0 1479 aa15.54■□□□□ 0.08
VPS39-207ENST00000563692 CEP164Q9UPV0 1460 aa15.53■□□□□ 0.08
VPS39-207ENST00000563692 FANCD2Q9BXW9 1451 aa15.52■□□□□ 0.07
VPS39-207ENST00000563692 WDR62O43379 1518 aa15.46■□□□□ 0.07
VPS39-207ENST00000563692 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.06
VPS39-207ENST00000563692 URB2Q14146 1524 aaKnown RBP15.33■□□□□ 0.04
VPS39-207ENST00000563692 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
VPS39-207ENST00000563692 ABCC8Q09428 1581 aa15.25■□□□□ 0.03
VPS39-207ENST00000563692 TOPBP1Q92547 1522 aa15.22■□□□□ 0.03
VPS39-207ENST00000563692 IFT140Q96RY7 1462 aa15.21■□□□□ 0.03
VPS39-207ENST00000563692 DNMBPQ6XZF7 1577 aa15.18■□□□□ 0.02
VPS39-207ENST00000563692 OSCARQ8IYS5 282 aa15.14■□□□□ 0.01
VPS39-207ENST00000563692 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
VPS39-207ENST00000563692 POLA1P09884 1462 aaPredicted RBP15.08■□□□□ 0
VPS39-207ENST00000563692 SOGA1O94964 1423 aa15.06■□□□□ 0
VPS39-207ENST00000563692 EIF4G3O43432 1585 aaKnown RBP15.02■□□□□ -0
VPS39-207ENST00000563692 AQRO60306 1485 aaKnown RBP eCLIP15.02■□□□□ -0
VPS39-207ENST00000563692 CHIC1Q5VXU3 224 aa15.02■□□□□ -0
VPS39-207ENST00000563692 TARBP1Q13395 1621 aaKnown RBP15.02□□□□□ -0.01
VPS39-207ENST00000563692 FGD5Q6ZNL6 1462 aa15.01□□□□□ -0.01
VPS39-207ENST00000563692 RAD54L2Q9Y4B4 1467 aa15.01□□□□□ -0.01
VPS39-207ENST00000563692 CUX1P39880 1505 aa15.01□□□□□ -0.01
VPS39-207ENST00000563692 TRIM41Q8WV44 630 aa15□□□□□ -0.01
VPS39-207ENST00000563692 TDRD9Q8NDG6 1382 aaKnown RBP14.98□□□□□ -0.01
VPS39-207ENST00000563692 FBLN2P98095 1184 aa14.98□□□□□ -0.01
VPS39-207ENST00000563692 WDR97A6NE52 1622 aa14.94□□□□□ -0.02
VPS39-207ENST00000563692 CHMP7Q8WUX9 453 aaPredicted RBP14.9□□□□□ -0.02
VPS39-207ENST00000563692 GRIN2BQ13224 1484 aa14.89□□□□□ -0.03
VPS39-207ENST00000563692 SNAPC4Q5SXM2 1469 aa14.89□□□□□ -0.03
VPS39-207ENST00000563692 WRNQ14191 1432 aaPredicted RBP eCLIP14.89□□□□□ -0.03
VPS39-207ENST00000563692 MAGI1Q96QZ7 1491 aaPredicted RBP14.88□□□□□ -0.03
VPS39-207ENST00000563692 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
VPS39-207ENST00000563692 ABCA10Q8WWZ4 1543 aa14.86□□□□□ -0.03
VPS39-207ENST00000563692 CHD1O14646 1710 aa14.84□□□□□ -0.03
VPS39-207ENST00000563692 ARHGEF11O15085 1522 aa14.82□□□□□ -0.04
VPS39-207ENST00000563692 TOP2BQ02880 1626 aa14.82□□□□□ -0.04
VPS39-207ENST00000563692 SYNJ2O15056 1496 aa14.82□□□□□ -0.04
VPS39-207ENST00000563692 RIMBP3CA6NJZ7 1639 aa14.81□□□□□ -0.04
VPS39-207ENST00000563692 RIMBP3BA6NNM3 1639 aa14.81□□□□□ -0.04
VPS39-207ENST00000563692 RIMBP3Q9UFD9 1639 aa14.81□□□□□ -0.04
VPS39-207ENST00000563692 SYNJ1O43426 1573 aa14.79□□□□□ -0.04
VPS39-207ENST00000563692 BIVM-ERCC5R4GMW8 1640 aa14.79□□□□□ -0.04
VPS39-207ENST00000563692 ABCA5Q8WWZ7 1642 aa14.77□□□□□ -0.04
VPS39-207ENST00000563692 CYB5RLQ6IPT4 315 aa14.77□□□□□ -0.05
VPS39-207ENST00000563692 PBRM1Q86U86 1689 aa14.76□□□□□ -0.05
VPS39-207ENST00000563692 CLASP1Q7Z460 1538 aa14.71□□□□□ -0.06
VPS39-207ENST00000563692 FHAD1B1AJZ9 1412 aa14.7□□□□□ -0.06
VPS39-207ENST00000563692 GRIN2AQ12879 1464 aa14.69□□□□□ -0.06
VPS39-207ENST00000563692 ARAP1Q96P48 1450 aa14.69□□□□□ -0.06
VPS39-207ENST00000563692 ERICH3Q5RHP9 1530 aa14.68□□□□□ -0.06
VPS39-207ENST00000563692 ADAMTS12P58397 1594 aa14.68□□□□□ -0.06
VPS39-207ENST00000563692 KIF27Q86VH2 1401 aa14.63□□□□□ -0.07
VPS39-207ENST00000563692 NUP160Q12769 1436 aa14.62□□□□□ -0.07
VPS39-207ENST00000563692 TRHP20396 242 aaPredicted RBP14.58□□□□□ -0.08
VPS39-207ENST00000563692 CEP170Q5SW79 1584 aa14.58□□□□□ -0.08
VPS39-207ENST00000563692 IGF1RP08069 1367 aa14.55□□□□□ -0.08
VPS39-207ENST00000563692 JPH4Q96JJ6 628 aa14.53□□□□□ -0.08
VPS39-207ENST00000563692 CARMIL1Q5VZK9 1371 aa14.49□□□□□ -0.09
VPS39-207ENST00000563692 CUL7Q14999 1698 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms