RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KIAA0586Q9BVV6 1533 aa29.08■■■□□ 2.25
CLN3-208ENST00000561505 KIF13AQ9H1H9 1805 aa29.07■■■□□ 2.24
CLN3-208ENST00000561505 KIF27Q86VH2 1401 aa29.04■■■□□ 2.24
CLN3-208ENST00000561505 MAPKBP1O60336 1514 aa29■■■□□ 2.23
CLN3-208ENST00000561505 CUL7Q14999 1698 aa28.99■■■□□ 2.23
CLN3-208ENST00000561505 ABCC10Q5T3U5 1492 aa28.99■■■□□ 2.23
CLN3-208ENST00000561505 AEBP2Q6ZN18 517 aaPredicted RBP28.98■■■□□ 2.23
CLN3-208ENST00000561505 ADCY10Q96PN6 1610 aa28.94■■■□□ 2.22
CLN3-208ENST00000561505 NPM1P06748 294 aaKnown RBP eCLIP28.9■■■□□ 2.22
CLN3-208ENST00000561505 FAM69CQ0P6D2 419 aa28.88■■■□□ 2.21
CLN3-208ENST00000561505 CARMIL1Q5VZK9 1371 aa28.88■■■□□ 2.21
CLN3-208ENST00000561505 DIP2BQ9P265 1576 aa28.87■■■□□ 2.21
CLN3-208ENST00000561505 PTPRGP23470 1445 aa28.78■■■□□ 2.2
CLN3-208ENST00000561505 TNIKQ9UKE5 1360 aa28.74■■■□□ 2.19
CLN3-208ENST00000561505 CARMIL2Q6F5E8 1435 aa28.72■■■□□ 2.19
CLN3-208ENST00000561505 IQGAP2Q13576 1575 aa28.69■■■□□ 2.18
CLN3-208ENST00000561505 ABCC2Q92887 1545 aa28.69■■■□□ 2.18
CLN3-208ENST00000561505 UHRF1BP1LA0JNW5 1464 aa28.68■■■□□ 2.18
CLN3-208ENST00000561505 DISP1Q96F81 1524 aa28.64■■■□□ 2.18
CLN3-208ENST00000561505 GLI2P10070 1586 aa28.59■■■□□ 2.17
CLN3-208ENST00000561505 KDM6BO15054 1643 aa28.59■■■□□ 2.17
CLN3-208ENST00000561505 PLB1Q6P1J6 1458 aa28.59■■■□□ 2.17
CLN3-208ENST00000561505 RAPGEF2Q9Y4G8 1499 aa28.59■■■□□ 2.17
CLN3-208ENST00000561505 UGGT2Q9NYU1 1516 aa28.59■■■□□ 2.17
CLN3-208ENST00000561505 UACAQ9BZF9 1416 aa28.58■■■□□ 2.17
CLN3-208ENST00000561505 ASXL2Q76L83 1435 aa28.57■■■□□ 2.16
CLN3-208ENST00000561505 KDM5BQ9UGL1 1544 aa28.53■■■□□ 2.16
CLN3-208ENST00000561505 TSPOAP1O95153 1857 aa28.5■■■□□ 2.15
CLN3-208ENST00000561505 PPRC1Q5VV67 1664 aaKnown RBP28.48■■■□□ 2.15
CLN3-208ENST00000561505 KDM4FA0A1W2PPD8 638 aa28.48■■■□□ 2.15
CLN3-208ENST00000561505 TTBK1Q5TCY1 1321 aaPredicted RBP28.46■■■□□ 2.15
CLN3-208ENST00000561505 KIAA0556O60303 1618 aa28.44■■■□□ 2.14
CLN3-208ENST00000561505 EPRSP07814 1512 aaKnown RBP28.42■■■□□ 2.14
CLN3-208ENST00000561505 MAP3K4Q9Y6R4 1608 aa28.37■■■□□ 2.13
CLN3-208ENST00000561505 COL17A1Q9UMD9 1497 aaPredicted RBP28.35■■■□□ 2.13
CLN3-208ENST00000561505 ZCCHC11Q5TAX3 1644 aaKnown RBP28.35■■■□□ 2.13
CLN3-208ENST00000561505 PRXQ9BXM0 1461 aa28.33■■■□□ 2.13
CLN3-208ENST00000561505 CTTNBP2Q8WZ74 1663 aa28.29■■■□□ 2.12
CLN3-208ENST00000561505 GOLGA3Q08378 1498 aa28.28■■■□□ 2.12
CLN3-208ENST00000561505 TEX14Q8IWB6 1497 aa28.27■■■□□ 2.12
CLN3-208ENST00000561505 WDR7Q9Y4E6 1490 aa28.27■■■□□ 2.12
CLN3-208ENST00000561505 ABCA8O94911 1581 aa28.25■■■□□ 2.11
CLN3-208ENST00000561505 MAGI3Q5TCQ9 1506 aa28.17■■■□□ 2.1
CLN3-208ENST00000561505 ADGRL1O94910 1474 aa28.15■■■□□ 2.1
CLN3-208ENST00000561505 CD109Q6YHK3 1445 aa28.1■■■□□ 2.09
CLN3-208ENST00000561505 CFAP43Q8NDM7 1665 aa28.1■■■□□ 2.09
CLN3-208ENST00000561505 ATP10BO94823 1461 aa28.02■■■□□ 2.08
CLN3-208ENST00000561505 KCNH8Q96L42 1107 aa28.01■■■□□ 2.07
CLN3-208ENST00000561505 CSRNP3Q8WYN3 585 aa27.99■■■□□ 2.07
CLN3-208ENST00000561505 SAMD9Q5K651 1589 aa27.98■■■□□ 2.07
CLN3-208ENST00000561505 ARAP3Q8WWN8 1544 aa27.97■■■□□ 2.07
CLN3-208ENST00000561505 FAM9AQ8IZU1 332 aaPredicted RBP27.92■■■□□ 2.06
CLN3-208ENST00000561505 PHLDB1Q86UU1 1377 aa27.91■■■□□ 2.06
CLN3-208ENST00000561505 ABCA9Q8IUA7 1624 aa27.89■■■□□ 2.06
CLN3-208ENST00000561505 P3H3Q8IVL6 736 aa27.89■■■□□ 2.06
CLN3-208ENST00000561505 EEA1Q15075 1411 aa27.87■■■□□ 2.05
CLN3-208ENST00000561505 RAPGEF6Q8TEU7 1601 aa27.83■■■□□ 2.05
CLN3-208ENST00000561505 NUP153P49790 1475 aaKnown RBP27.8■■■□□ 2.04
CLN3-208ENST00000561505 NEO1Q92859 1461 aa27.8■■■□□ 2.04
CLN3-208ENST00000561505 HECW2Q9P2P5 1572 aa27.8■■■□□ 2.04
CLN3-208ENST00000561505 ARID3CA6NKF2 412 aa27.78■■■□□ 2.04
CLN3-208ENST00000561505 KIF21BO75037 1637 aa27.74■■■□□ 2.03
CLN3-208ENST00000561505 ILDR1Q86SU0 546 aaPredicted RBP27.71■■■□□ 2.03
CLN3-208ENST00000561505 FHOD3Q2V2M9 1422 aa27.68■■■□□ 2.02
CLN3-208ENST00000561505 RAPGEF3O95398 923 aa27.67■■■□□ 2.02
CLN3-208ENST00000561505 FRMPD1Q5SYB0 1578 aa27.66■■■□□ 2.02
CLN3-208ENST00000561505 ADAMTSL3P82987 1691 aa27.65■■■□□ 2.02
CLN3-208ENST00000561505 EFCAB5A4FU69 1503 aa27.63■■■□□ 2.01
CLN3-208ENST00000561505 PLEKHD1A6NEE1 506 aa27.61■■■□□ 2.01
CLN3-208ENST00000561505 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.61■■■□□ 2.01
CLN3-208ENST00000561505 HNRNPUL2Q1KMD3 747 aaKnown RBP27.61■■■□□ 2.01
CLN3-208ENST00000561505 PTPRMP28827 1452 aa27.58■■■□□ 2.01
CLN3-208ENST00000561505 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.56■■■□□ 2
CLN3-208ENST00000561505 AKNAQ7Z591 1439 aa27.55■■■□□ 2
CLN3-208ENST00000561505 DENND4BO75064 1496 aaPredicted RBP27.54■■■□□ 2
CLN3-208ENST00000561505 BCORL1Q5H9F3 1711 aa27.53■■■□□ 2
CLN3-208ENST00000561505 RICTORQ6R327 1708 aa27.52■■■□□ 2
CLN3-208ENST00000561505 RANGAP1P46060 587 aaPredicted RBP27.51■■□□□ 1.99
CLN3-208ENST00000561505 FANCAO15360 1455 aa27.51■■□□□ 1.99
CLN3-208ENST00000561505 ARHGEF40Q8TER5 1519 aa27.49■■□□□ 1.99
CLN3-208ENST00000561505 CFAP74Q9C0B2 1584 aa27.48■■□□□ 1.99
CLN3-208ENST00000561505 ZMYM4Q5VZL5 1548 aa27.48■■□□□ 1.99
CLN3-208ENST00000561505 TTC37Q6PGP7 1564 aa27.47■■□□□ 1.99
CLN3-208ENST00000561505 MADDQ8WXG6 1647 aa27.43■■□□□ 1.98
CLN3-208ENST00000561505 MAGI2Q86UL8 1455 aa27.43■■□□□ 1.98
CLN3-208ENST00000561505 PLCH2O75038 1416 aa27.42■■□□□ 1.98
CLN3-208ENST00000561505 CDK13Q14004 1512 aaKnown RBP27.42■■□□□ 1.98
CLN3-208ENST00000561505 FMN1Q68DA7 1419 aa27.4■■□□□ 1.98
CLN3-208ENST00000561505 ARID4BQ4LE39 1312 aaPredicted RBP27.39■■□□□ 1.97
CLN3-208ENST00000561505 ARHGAP35Q9NRY4 1499 aa27.38■■□□□ 1.97
CLN3-208ENST00000561505 LMTK3Q96Q04 1460 aa27.36■■□□□ 1.97
CLN3-208ENST00000561505 YEATS2Q9ULM3 1422 aa27.35■■□□□ 1.97
CLN3-208ENST00000561505 PCF11O94913 1555 aaKnown RBP27.35■■□□□ 1.97
CLN3-208ENST00000561505 ZFYVE16Q7Z3T8 1539 aa27.34■■□□□ 1.97
CLN3-208ENST00000561505 POGZQ7Z3K3 1410 aa27.33■■□□□ 1.96
CLN3-208ENST00000561505 SCAPERQ9BY12 1400 aa27.33■■□□□ 1.96
CLN3-208ENST00000561505 HECW1Q76N89 1606 aa27.32■■□□□ 1.96
CLN3-208ENST00000561505 SIGLEC1Q9BZZ2 1709 aa27.32■■□□□ 1.96
CLN3-208ENST00000561505 UBTFP17480 764 aaKnown RBP27.3■■□□□ 1.96
CLN3-208ENST00000561505 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms