RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NISCHQ9Y2I1 1504 aa41.72■■■■■ 4.27
CLN3-208ENST00000561505 ABCC9O60706 1549 aa37.5■■■■□ 3.59
CLN3-208ENST00000561505 CCDC180Q9P1Z9 1646 aa37.48■■■■□ 3.59
CLN3-208ENST00000561505 RB1CC1Q8TDY2 1594 aa35.71■■■■□ 3.31
CLN3-208ENST00000561505 NACADO15069 1562 aa35.49■■■■□ 3.27
CLN3-208ENST00000561505 DNAJC5BQ9UF47 199 aa35.42■■■■□ 3.26
CLN3-208ENST00000561505 MYO15BQ96JP2 1530 aa35.1■■■■□ 3.21
CLN3-208ENST00000561505 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.2
CLN3-208ENST00000561505 PABPN1Q86U42 306 aaKnown RBP eCLIP34.88■■■■□ 3.17
CLN3-208ENST00000561505 UNC13AQ9UPW8 1703 aa34.85■■■■□ 3.17
CLN3-208ENST00000561505 BICRAQ9NZM4 1560 aa34.74■■■■□ 3.15
CLN3-208ENST00000561505 DCAF1Q9Y4B6 1507 aa34.55■■■■□ 3.12
CLN3-208ENST00000561505 ZCCHC6Q5VYS8 1495 aaKnown RBP34.54■■■■□ 3.12
CLN3-208ENST00000561505 SHROOM4Q9ULL8 1493 aa34.33■■■■□ 3.09
CLN3-208ENST00000561505 SCRIBQ14160 1630 aa33.98■■■■□ 3.03
CLN3-208ENST00000561505 CC2D2AQ9P2K1 1620 aa33.91■■■■□ 3.02
CLN3-208ENST00000561505 CECR2Q9BXF3 1484 aa33.84■■■■□ 3.01
CLN3-208ENST00000561505 EIF4G1Q04637 1599 aaKnown RBP33.84■■■■□ 3.01
CLN3-208ENST00000561505 NCAPD3P42695 1498 aa32.83■■■□□ 2.85
CLN3-208ENST00000561505 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
CLN3-208ENST00000561505 ATAD2BQ9ULI0 1458 aa32.64■■■□□ 2.82
CLN3-208ENST00000561505 SMARCA4P51532 1647 aa32.52■■■□□ 2.8
CLN3-208ENST00000561505 HMGXB3Q12766 1538 aa32.51■■■□□ 2.8
CLN3-208ENST00000561505 SMARCA2P51531 1590 aa32.51■■■□□ 2.79
CLN3-208ENST00000561505 CUX2O14529 1486 aa32.49■■■□□ 2.79
CLN3-208ENST00000561505 BAZ1AQ9NRL2 1556 aaPredicted RBP32.36■■■□□ 2.77
CLN3-208ENST00000561505 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
CLN3-208ENST00000561505 PEG3Q9GZU2 1588 aa32.33■■■□□ 2.77
CLN3-208ENST00000561505 BAZ1BQ9UIG0 1483 aaKnown RBP32.23■■■□□ 2.75
CLN3-208ENST00000561505 NESP48681 1621 aa32.2■■■□□ 2.75
CLN3-208ENST00000561505 MROH2BQ7Z745 1585 aa32.11■■■□□ 2.73
CLN3-208ENST00000561505 LAMC3Q9Y6N6 1575 aa32.02■■■□□ 2.72
CLN3-208ENST00000561505 THOC2Q8NI27 1593 aaKnown RBP31.94■■■□□ 2.7
CLN3-208ENST00000561505 PDS5BQ9NTI5 1447 aa31.83■■■□□ 2.69
CLN3-208ENST00000561505 CADPSQ9ULU8 1353 aa31.77■■■□□ 2.68
CLN3-208ENST00000561505 KIF21AQ7Z4S6 1674 aa31.74■■■□□ 2.67
CLN3-208ENST00000561505 WIZO95785 1651 aa31.64■■■□□ 2.66
CLN3-208ENST00000561505 MRC2Q9UBG0 1479 aa31.54■■■□□ 2.64
CLN3-208ENST00000561505 WDR62O43379 1518 aa31.51■■■□□ 2.63
CLN3-208ENST00000561505 RSF1Q96T23 1441 aaPredicted RBP31.43■■■□□ 2.62
CLN3-208ENST00000561505 CFTRP13569 1480 aa31.4■■■□□ 2.62
CLN3-208ENST00000561505 CEP164Q9UPV0 1460 aa31.36■■■□□ 2.61
CLN3-208ENST00000561505 FANCD2Q9BXW9 1451 aa31.33■■■□□ 2.61
CLN3-208ENST00000561505 TOP2AP11388 1531 aaKnown RBP31.29■■■□□ 2.6
CLN3-208ENST00000561505 URB2Q14146 1524 aaKnown RBP31.12■■■□□ 2.57
CLN3-208ENST00000561505 CCDC88BA6NC98 1476 aa30.95■■■□□ 2.55
CLN3-208ENST00000561505 OSCARQ8IYS5 282 aa30.95■■■□□ 2.55
CLN3-208ENST00000561505 PRDM2Q13029 1718 aa30.94■■■□□ 2.54
CLN3-208ENST00000561505 TRIM41Q8WV44 630 aa30.92■■■□□ 2.54
CLN3-208ENST00000561505 IFT140Q96RY7 1462 aa30.8■■■□□ 2.52
CLN3-208ENST00000561505 TOPBP1Q92547 1522 aa30.74■■■□□ 2.51
CLN3-208ENST00000561505 ZNF608Q9ULD9 1512 aaPredicted RBP30.73■■■□□ 2.51
CLN3-208ENST00000561505 ABCC8Q09428 1581 aa30.72■■■□□ 2.51
CLN3-208ENST00000561505 DNMBPQ6XZF7 1577 aa30.62■■■□□ 2.49
CLN3-208ENST00000561505 TARBP1Q13395 1621 aaKnown RBP30.51■■■□□ 2.48
CLN3-208ENST00000561505 EIF4G3O43432 1585 aaKnown RBP30.51■■■□□ 2.47
CLN3-208ENST00000561505 RIMBP3CA6NJZ7 1639 aa30.51■■■□□ 2.47
CLN3-208ENST00000561505 RIMBP3BA6NNM3 1639 aa30.51■■■□□ 2.47
CLN3-208ENST00000561505 RIMBP3Q9UFD9 1639 aa30.51■■■□□ 2.47
CLN3-208ENST00000561505 ARHGEF11O15085 1522 aa30.43■■■□□ 2.46
CLN3-208ENST00000561505 POLA1P09884 1462 aaPredicted RBP30.43■■■□□ 2.46
CLN3-208ENST00000561505 AQRO60306 1485 aaKnown RBP eCLIP30.42■■■□□ 2.466e-6■■■■□ 25.1
CLN3-208ENST00000561505 RAD54L2Q9Y4B4 1467 aa30.27■■■□□ 2.44
CLN3-208ENST00000561505 SOGA1O94964 1423 aa30.27■■■□□ 2.44
CLN3-208ENST00000561505 CHD1O14646 1710 aa30.27■■■□□ 2.44
CLN3-208ENST00000561505 WDR97A6NE52 1622 aa30.23■■■□□ 2.43
CLN3-208ENST00000561505 TDRD9Q8NDG6 1382 aaKnown RBP30.2■■■□□ 2.43
CLN3-208ENST00000561505 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
CLN3-208ENST00000561505 CUX1P39880 1505 aa30.17■■■□□ 2.42
CLN3-208ENST00000561505 CYB5RLQ6IPT4 315 aa30.15■■■□□ 2.42
CLN3-208ENST00000561505 ARAP1Q96P48 1450 aa30.13■■■□□ 2.41
CLN3-208ENST00000561505 FBLN2P98095 1184 aa30.11■■■□□ 2.41
CLN3-208ENST00000561505 SNAPC4Q5SXM2 1469 aa30.08■■■□□ 2.41
CLN3-208ENST00000561505 MAGI1Q96QZ7 1491 aaPredicted RBP30.07■■■□□ 2.4
CLN3-208ENST00000561505 CLASP1Q7Z460 1538 aa30.05■■■□□ 2.4
CLN3-208ENST00000561505 GRIN2BQ13224 1484 aa30.04■■■□□ 2.4
CLN3-208ENST00000561505 CHMP7Q8WUX9 453 aaPredicted RBP29.97■■■□□ 2.39
CLN3-208ENST00000561505 SYNJ2O15056 1496 aa29.96■■■□□ 2.39
CLN3-208ENST00000561505 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
CLN3-208ENST00000561505 ABCA10Q8WWZ4 1543 aa29.91■■■□□ 2.38
CLN3-208ENST00000561505 GAPVD1Q14C86 1478 aa29.9■■■□□ 2.38
CLN3-208ENST00000561505 ABCA5Q8WWZ7 1642 aa29.83■■■□□ 2.37
CLN3-208ENST00000561505 PBRM1Q86U86 1689 aa29.82■■■□□ 2.36
CLN3-208ENST00000561505 TRHP20396 242 aaPredicted RBP29.77■■■□□ 2.36
CLN3-208ENST00000561505 WRNQ14191 1432 aaPredicted RBP eCLIP29.71■■■□□ 2.35
CLN3-208ENST00000561505 SUPT5HO00267 1087 aaKnown RBP29.71■■■□□ 2.35
CLN3-208ENST00000561505 TOP2BQ02880 1626 aa29.65■■■□□ 2.34
CLN3-208ENST00000561505 BIVM-ERCC5R4GMW8 1640 aa29.65■■■□□ 2.34
CLN3-208ENST00000561505 GRIN2AQ12879 1464 aa29.65■■■□□ 2.34
CLN3-208ENST00000561505 NUP160Q12769 1436 aa29.62■■■□□ 2.33
CLN3-208ENST00000561505 ADAMTS12P58397 1594 aa29.59■■■□□ 2.33
CLN3-208ENST00000561505 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
CLN3-208ENST00000561505 CEP170Q5SW79 1584 aa29.52■■■□□ 2.32
CLN3-208ENST00000561505 ERICH3Q5RHP9 1530 aa29.51■■■□□ 2.32
CLN3-208ENST00000561505 ERCC6L2Q5T890 1561 aa29.5■■■□□ 2.31
CLN3-208ENST00000561505 SHROOM2Q13796 1616 aa29.49■■■□□ 2.31
CLN3-208ENST00000561505 JPH4Q96JJ6 628 aa29.26■■■□□ 2.27
CLN3-208ENST00000561505 PRG4Q92954 1404 aaPredicted RBP29.25■■■□□ 2.27
CLN3-208ENST00000561505 RUSC2Q8N2Y8 1516 aa29.18■■■□□ 2.26
CLN3-208ENST00000561505 IGF1RP08069 1367 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms