RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 GRIN2AQ12879 1464 aa12.32□□□□□ -0.44
SPG11-224ENST00000561268 NUP160Q12769 1436 aa12.3□□□□□ -0.44
SPG11-224ENST00000561268 CUL7Q14999 1698 aa12.29□□□□□ -0.44
SPG11-224ENST00000561268 RUSC2Q8N2Y8 1516 aa12.27□□□□□ -0.44
SPG11-224ENST00000561268 FHAD1B1AJZ9 1412 aa12.26□□□□□ -0.45
SPG11-224ENST00000561268 SCAF1Q9H7N4 1312 aaKnown RBP12.23□□□□□ -0.45
SPG11-224ENST00000561268 TRIM41Q8WV44 630 aa12.23□□□□□ -0.45
SPG11-224ENST00000561268 ERCC6L2Q5T890 1561 aa12.22□□□□□ -0.45
SPG11-224ENST00000561268 CHMP7Q8WUX9 453 aaPredicted RBP12.19□□□□□ -0.46
SPG11-224ENST00000561268 FBLN2P98095 1184 aa12.17□□□□□ -0.46
SPG11-224ENST00000561268 CACNB1Q02641 598 aaPredicted RBP12.17□□□□□ -0.46
SPG11-224ENST00000561268 KIF27Q86VH2 1401 aa12.13□□□□□ -0.47
SPG11-224ENST00000561268 KIF13AQ9H1H9 1805 aa12.11□□□□□ -0.47
SPG11-224ENST00000561268 CYB5RLQ6IPT4 315 aa12.09□□□□□ -0.47
SPG11-224ENST00000561268 CTTNBP2Q8WZ74 1663 aa12.09□□□□□ -0.47
SPG11-224ENST00000561268 KIAA0586Q9BVV6 1533 aa12.08□□□□□ -0.48
SPG11-224ENST00000561268 IGF1RP08069 1367 aa12.07□□□□□ -0.48
SPG11-224ENST00000561268 IQGAP2Q13576 1575 aa12.05□□□□□ -0.48
SPG11-224ENST00000561268 ADCY10Q96PN6 1610 aa12.05□□□□□ -0.48
SPG11-224ENST00000561268 PRG4Q92954 1404 aaPredicted RBP12.03□□□□□ -0.48
SPG11-224ENST00000561268 MAPKBP1O60336 1514 aa12.01□□□□□ -0.49
SPG11-224ENST00000561268 DCAF8L1A6NGE4 600 aa12.01□□□□□ -0.49
SPG11-224ENST00000561268 CARMIL1Q5VZK9 1371 aa11.99□□□□□ -0.49
SPG11-224ENST00000561268 UGGT2Q9NYU1 1516 aa11.99□□□□□ -0.49
SPG11-224ENST00000561268 KIAA0556O60303 1618 aa11.97□□□□□ -0.49
SPG11-224ENST00000561268 DIP2BQ9P265 1576 aa11.97□□□□□ -0.49
SPG11-224ENST00000561268 RAPGEF2Q9Y4G8 1499 aa11.96□□□□□ -0.49
SPG11-224ENST00000561268 DISP1Q96F81 1524 aa11.96□□□□□ -0.5
SPG11-224ENST00000561268 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
SPG11-224ENST00000561268 PRXQ9BXM0 1461 aa11.94□□□□□ -0.5
SPG11-224ENST00000561268 UHRF1BP1LA0JNW5 1464 aa11.9□□□□□ -0.5
SPG11-224ENST00000561268 ABCC2Q92887 1545 aa11.9□□□□□ -0.5
SPG11-224ENST00000561268 ABCC10Q5T3U5 1492 aa11.89□□□□□ -0.51
SPG11-224ENST00000561268 PPRC1Q5VV67 1664 aaKnown RBP11.89□□□□□ -0.51
SPG11-224ENST00000561268 ZCCHC11Q5TAX3 1644 aaKnown RBP11.88□□□□□ -0.51
SPG11-224ENST00000561268 CARMIL2Q6F5E8 1435 aa11.87□□□□□ -0.51
SPG11-224ENST00000561268 SAMD9Q5K651 1589 aa11.87□□□□□ -0.51
SPG11-224ENST00000561268 TNIKQ9UKE5 1360 aa11.86□□□□□ -0.51
SPG11-224ENST00000561268 GLI2P10070 1586 aa11.86□□□□□ -0.51
SPG11-224ENST00000561268 KDM5BQ9UGL1 1544 aa11.85□□□□□ -0.51
SPG11-224ENST00000561268 ABCA8O94911 1581 aa11.84□□□□□ -0.51
SPG11-224ENST00000561268 TRHP20396 242 aaPredicted RBP11.84□□□□□ -0.51
SPG11-224ENST00000561268 KIF21BO75037 1637 aa11.84□□□□□ -0.51
SPG11-224ENST00000561268 MAP3K4Q9Y6R4 1608 aa11.84□□□□□ -0.51
SPG11-224ENST00000561268 TSPOAP1O95153 1857 aa11.84□□□□□ -0.51
SPG11-224ENST00000561268 EEA1Q15075 1411 aa11.83□□□□□ -0.52
SPG11-224ENST00000561268 PTPRGP23470 1445 aa11.82□□□□□ -0.52
SPG11-224ENST00000561268 RNF39Q9H2S5 420 aa11.81□□□□□ -0.52
SPG11-224ENST00000561268 GOLGA3Q08378 1498 aa11.81□□□□□ -0.52
SPG11-224ENST00000561268 UACAQ9BZF9 1416 aa11.8□□□□□ -0.52
SPG11-224ENST00000561268 CFAP43Q8NDM7 1665 aa11.78□□□□□ -0.52
SPG11-224ENST00000561268 PLB1Q6P1J6 1458 aa11.78□□□□□ -0.52
SPG11-224ENST00000561268 KDM6BO15054 1643 aa11.78□□□□□ -0.52
SPG11-224ENST00000561268 HOXD11P31277 338 aaPredicted RBP11.77□□□□□ -0.53
SPG11-224ENST00000561268 PPP4R3CPQ6ZMV5 832 aa11.77□□□□□ -0.53
SPG11-224ENST00000561268 ASXL2Q76L83 1435 aa11.76□□□□□ -0.53
SPG11-224ENST00000561268 EPRSP07814 1512 aaKnown RBP11.74□□□□□ -0.53
SPG11-224ENST00000561268 RAPGEF6Q8TEU7 1601 aa11.73□□□□□ -0.53
SPG11-224ENST00000561268 EFCAB5A4FU69 1503 aa11.72□□□□□ -0.53
SPG11-224ENST00000561268 WDR7Q9Y4E6 1490 aa11.72□□□□□ -0.53
SPG11-224ENST00000561268 ABCA9Q8IUA7 1624 aa11.69□□□□□ -0.54
SPG11-224ENST00000561268 NPM1P06748 294 aaKnown RBP eCLIP11.68□□□□□ -0.54
SPG11-224ENST00000561268 FAM69CQ0P6D2 419 aa11.66□□□□□ -0.54
SPG11-224ENST00000561268 CSRNP3Q8WYN3 585 aa11.66□□□□□ -0.54
SPG11-224ENST00000561268 MAGI3Q5TCQ9 1506 aa11.65□□□□□ -0.54
SPG11-224ENST00000561268 TEX14Q8IWB6 1497 aa11.65□□□□□ -0.54
SPG11-224ENST00000561268 NUP153P49790 1475 aaKnown RBP11.63□□□□□ -0.55
SPG11-224ENST00000561268 LRRIQ1Q96JM4 1722 aa11.63□□□□□ -0.55
SPG11-224ENST00000561268 CNKSR2Q8WXI2 1034 aa11.62□□□□□ -0.55
SPG11-224ENST00000561268 ATP10BO94823 1461 aa11.62□□□□□ -0.55
SPG11-224ENST00000561268 RNF216Q9NWF9 866 aaPredicted RBP11.61□□□□□ -0.55
SPG11-224ENST00000561268 COL17A1Q9UMD9 1497 aaPredicted RBP11.6□□□□□ -0.55
SPG11-224ENST00000561268 C1QBPQ07021 282 aaKnown RBP11.6□□□□□ -0.55
SPG11-224ENST00000561268 FHOD3Q2V2M9 1422 aa11.59□□□□□ -0.55
SPG11-224ENST00000561268 HECW1Q76N89 1606 aa11.58□□□□□ -0.56
SPG11-224ENST00000561268 FRMPD1Q5SYB0 1578 aa11.58□□□□□ -0.56
SPG11-224ENST00000561268 CFAP74Q9C0B2 1584 aa11.57□□□□□ -0.56
SPG11-224ENST00000561268 RICTORQ6R327 1708 aa11.57□□□□□ -0.56
SPG11-224ENST00000561268 ARHGAP35Q9NRY4 1499 aa11.56□□□□□ -0.56
SPG11-224ENST00000561268 ARAP3Q8WWN8 1544 aa11.55□□□□□ -0.56
SPG11-224ENST00000561268 TTC37Q6PGP7 1564 aa11.55□□□□□ -0.56
SPG11-224ENST00000561268 TTBK1Q5TCY1 1321 aaPredicted RBP11.55□□□□□ -0.56
SPG11-224ENST00000561268 CD109Q6YHK3 1445 aa11.53□□□□□ -0.56
SPG11-224ENST00000561268 MYO5CQ9NQX4 1742 aa11.53□□□□□ -0.56
SPG11-224ENST00000561268 NEO1Q92859 1461 aa11.52□□□□□ -0.56
SPG11-224ENST00000561268 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.52□□□□□ -0.57
SPG11-224ENST00000561268 CDK13Q14004 1512 aaKnown RBP11.51□□□□□ -0.57
SPG11-224ENST00000561268 PCF11O94913 1555 aaKnown RBP11.51□□□□□ -0.57
SPG11-224ENST00000561268 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
SPG11-224ENST00000561268 ARHGEF40Q8TER5 1519 aa11.5□□□□□ -0.57
SPG11-224ENST00000561268 FMN1Q68DA7 1419 aa11.49□□□□□ -0.57
SPG11-224ENST00000561268 KIF14Q15058 1648 aa11.48□□□□□ -0.57
SPG11-224ENST00000561268 ADGRL1O94910 1474 aa11.47□□□□□ -0.57
SPG11-224ENST00000561268 PHLDB1Q86UU1 1377 aa11.47□□□□□ -0.57
SPG11-224ENST00000561268 CDC42BPBQ9Y5S2 1711 aa11.46□□□□□ -0.58
SPG11-224ENST00000561268 ADAMTSL3P82987 1691 aa11.46□□□□□ -0.58
SPG11-224ENST00000561268 PREX2Q70Z35 1606 aa11.46□□□□□ -0.58
SPG11-224ENST00000561268 P3H3Q8IVL6 736 aa11.45□□□□□ -0.58
SPG11-224ENST00000561268 CDC42BPAQ5VT25 1732 aa11.45□□□□□ -0.58
SPG11-224ENST00000561268 BCORL1Q5H9F3 1711 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms