RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 NUP160Q12769 1436 aa17.32■□□□□ 0.36
TPM1-229ENST00000561242 CARMIL2Q6F5E8 1435 aa17.31■□□□□ 0.36
TPM1-229ENST00000561242 KIAA0586Q9BVV6 1533 aa17.31■□□□□ 0.36
TPM1-229ENST00000561242 NPM1P06748 294 aaKnown RBP eCLIP17.3■□□□□ 0.36
TPM1-229ENST00000561242 PRG4Q92954 1404 aaPredicted RBP17.27■□□□□ 0.35
TPM1-229ENST00000561242 PRXQ9BXM0 1461 aa17.26■□□□□ 0.35
TPM1-229ENST00000561242 CEP170Q5SW79 1584 aa17.23■□□□□ 0.35
TPM1-229ENST00000561242 ARHGEF11O15085 1522 aa17.21■□□□□ 0.35
TPM1-229ENST00000561242 CLASP1Q7Z460 1538 aa17.21■□□□□ 0.34
TPM1-229ENST00000561242 GOLGA3Q08378 1498 aa17.2■□□□□ 0.34
TPM1-229ENST00000561242 P3H3Q8IVL6 736 aa17.19■□□□□ 0.34
TPM1-229ENST00000561242 PTPRGP23470 1445 aa17.17■□□□□ 0.34
TPM1-229ENST00000561242 TNIKQ9UKE5 1360 aa17.15■□□□□ 0.34
TPM1-229ENST00000561242 IQGAP2Q13576 1575 aa17.15■□□□□ 0.34
TPM1-229ENST00000561242 ATP1B4Q9UN42 357 aaPredicted RBP17.13■□□□□ 0.33
TPM1-229ENST00000561242 RIMBP3CA6NJZ7 1639 aa17.12■□□□□ 0.33
TPM1-229ENST00000561242 RIMBP3BA6NNM3 1639 aa17.12■□□□□ 0.33
TPM1-229ENST00000561242 RIMBP3Q9UFD9 1639 aa17.12■□□□□ 0.33
TPM1-229ENST00000561242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.11■□□□□ 0.33
TPM1-229ENST00000561242 TRHP20396 242 aaPredicted RBP17.11■□□□□ 0.33
TPM1-229ENST00000561242 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
TPM1-229ENST00000561242 KIF21BO75037 1637 aa17.1■□□□□ 0.33
TPM1-229ENST00000561242 ARAP1Q96P48 1450 aa17.05■□□□□ 0.32
TPM1-229ENST00000561242 LOC105371045A0A1W2PR82 267 aa17.04■□□□□ 0.32
TPM1-229ENST00000561242 UGGT2Q9NYU1 1516 aa17.04■□□□□ 0.32
TPM1-229ENST00000561242 SHROOM2Q13796 1616 aa17.02■□□□□ 0.31
TPM1-229ENST00000561242 CTTNBP2Q8WZ74 1663 aa16.98■□□□□ 0.31
TPM1-229ENST00000561242 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
TPM1-229ENST00000561242 CDK11AQ9UQ88 783 aaPredicted RBP16.96■□□□□ 0.31
TPM1-229ENST00000561242 ERCC6L2Q5T890 1561 aa16.96■□□□□ 0.31
TPM1-229ENST00000561242 DISP1Q96F81 1524 aa16.96■□□□□ 0.3
TPM1-229ENST00000561242 ARID3CA6NKF2 412 aa16.95■□□□□ 0.3
TPM1-229ENST00000561242 APLP2Q06481 763 aa16.94■□□□□ 0.3
TPM1-229ENST00000561242 CLIP1P30622 1438 aa16.94■□□□□ 0.3
TPM1-229ENST00000561242 FMN1Q68DA7 1419 aa16.93■□□□□ 0.3
TPM1-229ENST00000561242 KIAA0556O60303 1618 aa16.92■□□□□ 0.3
TPM1-229ENST00000561242 EFCAB5A4FU69 1503 aa16.92■□□□□ 0.3
TPM1-229ENST00000561242 FHOD3Q2V2M9 1422 aa16.92■□□□□ 0.3
TPM1-229ENST00000561242 PLEKHD1A6NEE1 506 aa16.91■□□□□ 0.3
TPM1-229ENST00000561242 AEBP2Q6ZN18 517 aaPredicted RBP16.9■□□□□ 0.3
TPM1-229ENST00000561242 FAM69CQ0P6D2 419 aa16.87■□□□□ 0.29
TPM1-229ENST00000561242 KCNH8Q96L42 1107 aa16.87■□□□□ 0.29
TPM1-229ENST00000561242 UHRF1BP1LA0JNW5 1464 aa16.85■□□□□ 0.29
TPM1-229ENST00000561242 CEP162Q5TB80 1403 aa16.83■□□□□ 0.28
TPM1-229ENST00000561242 PLB1Q6P1J6 1458 aa16.83■□□□□ 0.28
TPM1-229ENST00000561242 ABCC2Q92887 1545 aa16.83■□□□□ 0.28
TPM1-229ENST00000561242 ARHGAP35Q9NRY4 1499 aa16.81■□□□□ 0.28
TPM1-229ENST00000561242 SAMD9Q5K651 1589 aa16.79■□□□□ 0.28
TPM1-229ENST00000561242 ASXL2Q76L83 1435 aa16.76■□□□□ 0.27
TPM1-229ENST00000561242 KDM5BQ9UGL1 1544 aa16.72■□□□□ 0.27
TPM1-229ENST00000561242 ADCY10Q96PN6 1610 aa16.72■□□□□ 0.27
TPM1-229ENST00000561242 ABCA8O94911 1581 aa16.72■□□□□ 0.27
TPM1-229ENST00000561242 RAPGEF6Q8TEU7 1601 aa16.71■□□□□ 0.27
TPM1-229ENST00000561242 ATP10BO94823 1461 aa16.7■□□□□ 0.26
TPM1-229ENST00000561242 CASKIN1Q8WXD9 1431 aa16.7■□□□□ 0.26
TPM1-229ENST00000561242 MAPKBP1O60336 1514 aa16.68■□□□□ 0.26
TPM1-229ENST00000561242 WDR7Q9Y4E6 1490 aa16.67■□□□□ 0.26
TPM1-229ENST00000561242 CCDC18Q5T9S5 1454 aa16.67■□□□□ 0.26
TPM1-229ENST00000561242 HECW1Q76N89 1606 aa16.67■□□□□ 0.26
TPM1-229ENST00000561242 MTUS2Q5JR59 1369 aa16.66■□□□□ 0.26
TPM1-229ENST00000561242 ABCC10Q5T3U5 1492 aa16.66■□□□□ 0.26
TPM1-229ENST00000561242 NUP153P49790 1475 aaKnown RBP16.65■□□□□ 0.26
TPM1-229ENST00000561242 FYCO1Q9BQS8 1478 aa16.64■□□□□ 0.25
TPM1-229ENST00000561242 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
TPM1-229ENST00000561242 EPRSP07814 1512 aaKnown RBP16.63■□□□□ 0.25
TPM1-229ENST00000561242 CD109Q6YHK3 1445 aa16.62■□□□□ 0.25
TPM1-229ENST00000561242 ZCCHC11Q5TAX3 1644 aaKnown RBP16.61■□□□□ 0.25
TPM1-229ENST00000561242 MYT1LQ9UL68 1186 aa16.6■□□□□ 0.25
TPM1-229ENST00000561242 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.24
TPM1-229ENST00000561242 TEX14Q8IWB6 1497 aa16.58■□□□□ 0.24
TPM1-229ENST00000561242 CDK13Q14004 1512 aaKnown RBP16.55■□□□□ 0.24
TPM1-229ENST00000561242 TROQ12816 1431 aaPredicted RBP16.55■□□□□ 0.24
TPM1-229ENST00000561242 ZNF777Q9ULD5 760 aaPredicted RBP16.55■□□□□ 0.24
TPM1-229ENST00000561242 CCNB3Q8WWL7 1395 aa16.53■□□□□ 0.24
TPM1-229ENST00000561242 PHLDB1Q86UU1 1377 aa16.52■□□□□ 0.24
TPM1-229ENST00000561242 PCF11O94913 1555 aaKnown RBP16.52■□□□□ 0.24
TPM1-229ENST00000561242 CFDP1Q9UEE9 299 aaPredicted RBP16.52■□□□□ 0.24
TPM1-229ENST00000561242 GLI2P10070 1586 aa16.5■□□□□ 0.23
TPM1-229ENST00000561242 DIP2BQ9P265 1576 aa16.49■□□□□ 0.23
TPM1-229ENST00000561242 KIF14Q15058 1648 aa16.45■□□□□ 0.22
TPM1-229ENST00000561242 MAGI3Q5TCQ9 1506 aa16.44■□□□□ 0.22
TPM1-229ENST00000561242 PLCH2O75038 1416 aa16.43■□□□□ 0.22
TPM1-229ENST00000561242 KANK4Q5T7N3 995 aaPredicted RBP16.41■□□□□ 0.22
TPM1-229ENST00000561242 FANCAO15360 1455 aa16.41■□□□□ 0.22
TPM1-229ENST00000561242 ARHGAP5Q13017 1502 aa16.4■□□□□ 0.22
TPM1-229ENST00000561242 EHBP1L1Q8N3D4 1523 aa16.4■□□□□ 0.22
TPM1-229ENST00000561242 AKNAQ7Z591 1439 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 TSPY4P0CV99 314 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 TSPY10P0CW01 314 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 RSPH4AQ5TD94 716 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 NEO1Q92859 1461 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 MAP3K1Q13233 1512 aa16.39■□□□□ 0.21
TPM1-229ENST00000561242 CFAP43Q8NDM7 1665 aa16.38■□□□□ 0.21
TPM1-229ENST00000561242 LRRC9Q6ZRR7 1453 aa16.38■□□□□ 0.21
TPM1-229ENST00000561242 PPARGC1BQ86YN6 1023 aaKnown RBP16.38■□□□□ 0.21
TPM1-229ENST00000561242 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.37■□□□□ 0.21
TPM1-229ENST00000561242 RAPGEF3O95398 923 aa16.37■□□□□ 0.21
TPM1-229ENST00000561242 TSPOAP1O95153 1857 aa16.36■□□□□ 0.21
TPM1-229ENST00000561242 TIAM1Q13009 1591 aa16.36■□□□□ 0.21
TPM1-229ENST00000561242 ABCA9Q8IUA7 1624 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms