RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CUL7Q14999 1698 aa24.53■■□□□ 1.52
LDLR-213ENST00000560502 IGF1RP08069 1367 aa24.5■■□□□ 1.51
LDLR-213ENST00000560502 KIF27Q86VH2 1401 aa24.49■■□□□ 1.51
LDLR-213ENST00000560502 KIAA0586Q9BVV6 1533 aa24.49■■□□□ 1.51
LDLR-213ENST00000560502 ADCY10Q96PN6 1610 aa24.46■■□□□ 1.51
LDLR-213ENST00000560502 MAPKBP1O60336 1514 aa24.45■■□□□ 1.51
LDLR-213ENST00000560502 ABCC10Q5T3U5 1492 aa24.41■■□□□ 1.5
LDLR-213ENST00000560502 DIP2BQ9P265 1576 aa24.39■■□□□ 1.5
LDLR-213ENST00000560502 AEBP2Q6ZN18 517 aaPredicted RBP24.39■■□□□ 1.49
LDLR-213ENST00000560502 CARMIL1Q5VZK9 1371 aa24.31■■□□□ 1.48
LDLR-213ENST00000560502 NPM1P06748 294 aaKnown RBP eCLIP24.31■■□□□ 1.48
LDLR-213ENST00000560502 FAM69CQ0P6D2 419 aa24.3■■□□□ 1.48
LDLR-213ENST00000560502 IQGAP2Q13576 1575 aa24.25■■□□□ 1.47
LDLR-213ENST00000560502 PTPRGP23470 1445 aa24.23■■□□□ 1.47
LDLR-213ENST00000560502 CARMIL2Q6F5E8 1435 aa24.19■■□□□ 1.46
LDLR-213ENST00000560502 TNIKQ9UKE5 1360 aa24.19■■□□□ 1.46
LDLR-213ENST00000560502 TSPOAP1O95153 1857 aa24.19■■□□□ 1.46
LDLR-213ENST00000560502 ABCC2Q92887 1545 aa24.18■■□□□ 1.46
LDLR-213ENST00000560502 KDM6BO15054 1643 aa24.17■■□□□ 1.46
LDLR-213ENST00000560502 DISP1Q96F81 1524 aa24.15■■□□□ 1.46
LDLR-213ENST00000560502 UHRF1BP1LA0JNW5 1464 aa24.14■■□□□ 1.46
LDLR-213ENST00000560502 UGGT2Q9NYU1 1516 aa24.11■■□□□ 1.45
LDLR-213ENST00000560502 RAPGEF2Q9Y4G8 1499 aa24.11■■□□□ 1.45
LDLR-213ENST00000560502 GLI2P10070 1586 aa24.1■■□□□ 1.45
LDLR-213ENST00000560502 PPRC1Q5VV67 1664 aaKnown RBP24.08■■□□□ 1.45
LDLR-213ENST00000560502 ASXL2Q76L83 1435 aa24.08■■□□□ 1.44
LDLR-213ENST00000560502 PLB1Q6P1J6 1458 aa24.07■■□□□ 1.44
LDLR-213ENST00000560502 UACAQ9BZF9 1416 aa24.07■■□□□ 1.44
LDLR-213ENST00000560502 TTBK1Q5TCY1 1321 aaPredicted RBP24.06■■□□□ 1.44
LDLR-213ENST00000560502 KIAA0556O60303 1618 aa24.06■■□□□ 1.44
LDLR-213ENST00000560502 KDM5BQ9UGL1 1544 aa24.03■■□□□ 1.44
LDLR-213ENST00000560502 CTTNBP2Q8WZ74 1663 aa24■■□□□ 1.43
LDLR-213ENST00000560502 ZCCHC11Q5TAX3 1644 aaKnown RBP23.99■■□□□ 1.43
LDLR-213ENST00000560502 MAP3K4Q9Y6R4 1608 aa23.97■■□□□ 1.43
LDLR-213ENST00000560502 EPRSP07814 1512 aaKnown RBP23.95■■□□□ 1.43
LDLR-213ENST00000560502 KDM4FA0A1W2PPD8 638 aa23.93■■□□□ 1.42
LDLR-213ENST00000560502 PRXQ9BXM0 1461 aa23.87■■□□□ 1.41
LDLR-213ENST00000560502 COL17A1Q9UMD9 1497 aaPredicted RBP23.87■■□□□ 1.41
LDLR-213ENST00000560502 GOLGA3Q08378 1498 aa23.85■■□□□ 1.41
LDLR-213ENST00000560502 WDR7Q9Y4E6 1490 aa23.85■■□□□ 1.41
LDLR-213ENST00000560502 ABCA8O94911 1581 aa23.85■■□□□ 1.41
LDLR-213ENST00000560502 TEX14Q8IWB6 1497 aa23.84■■□□□ 1.41
LDLR-213ENST00000560502 CFAP43Q8NDM7 1665 aa23.76■■□□□ 1.39
LDLR-213ENST00000560502 ADGRL1O94910 1474 aa23.75■■□□□ 1.39
LDLR-213ENST00000560502 MAGI3Q5TCQ9 1506 aa23.72■■□□□ 1.39
LDLR-213ENST00000560502 CD109Q6YHK3 1445 aa23.67■■□□□ 1.38
LDLR-213ENST00000560502 SAMD9Q5K651 1589 aa23.65■■□□□ 1.38
LDLR-213ENST00000560502 ATP10BO94823 1461 aa23.6■■□□□ 1.37
LDLR-213ENST00000560502 KCNH8Q96L42 1107 aa23.59■■□□□ 1.37
LDLR-213ENST00000560502 ABCA9Q8IUA7 1624 aa23.56■■□□□ 1.36
LDLR-213ENST00000560502 RAPGEF6Q8TEU7 1601 aa23.55■■□□□ 1.36
LDLR-213ENST00000560502 ARAP3Q8WWN8 1544 aa23.54■■□□□ 1.36
LDLR-213ENST00000560502 CSRNP3Q8WYN3 585 aa23.54■■□□□ 1.36
LDLR-213ENST00000560502 P3H3Q8IVL6 736 aa23.52■■□□□ 1.36
LDLR-213ENST00000560502 KIF21BO75037 1637 aa23.51■■□□□ 1.35
LDLR-213ENST00000560502 EEA1Q15075 1411 aa23.5■■□□□ 1.35
LDLR-213ENST00000560502 HECW2Q9P2P5 1572 aa23.49■■□□□ 1.35
LDLR-213ENST00000560502 ARID3CA6NKF2 412 aa23.49■■□□□ 1.35
LDLR-213ENST00000560502 FAM9AQ8IZU1 332 aaPredicted RBP23.47■■□□□ 1.35
LDLR-213ENST00000560502 NUP153P49790 1475 aaKnown RBP23.45■■□□□ 1.34
LDLR-213ENST00000560502 PHLDB1Q86UU1 1377 aa23.43■■□□□ 1.34
LDLR-213ENST00000560502 NEO1Q92859 1461 aa23.41■■□□□ 1.34
LDLR-213ENST00000560502 FHOD3Q2V2M9 1422 aa23.4■■□□□ 1.34
LDLR-213ENST00000560502 FRMPD1Q5SYB0 1578 aa23.4■■□□□ 1.34
LDLR-213ENST00000560502 EFCAB5A4FU69 1503 aa23.36■■□□□ 1.33
LDLR-213ENST00000560502 ADAMTSL3P82987 1691 aa23.35■■□□□ 1.33
LDLR-213ENST00000560502 RAPGEF3O95398 923 aa23.3■■□□□ 1.32
LDLR-213ENST00000560502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.29■■□□□ 1.32
LDLR-213ENST00000560502 HNRNPUL2Q1KMD3 747 aaKnown RBP23.29■■□□□ 1.32
LDLR-213ENST00000560502 ILDR1Q86SU0 546 aaPredicted RBP23.29■■□□□ 1.32
LDLR-213ENST00000560502 RICTORQ6R327 1708 aa23.28■■□□□ 1.32
LDLR-213ENST00000560502 BCORL1Q5H9F3 1711 aa23.28■■□□□ 1.32
LDLR-213ENST00000560502 RANGAP1P46060 587 aaPredicted RBP23.27■■□□□ 1.32
LDLR-213ENST00000560502 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.26■■□□□ 1.31
LDLR-213ENST00000560502 ARHGEF40Q8TER5 1519 aa23.26■■□□□ 1.31
LDLR-213ENST00000560502 TTC37Q6PGP7 1564 aa23.26■■□□□ 1.31
LDLR-213ENST00000560502 CFAP74Q9C0B2 1584 aa23.26■■□□□ 1.31
LDLR-213ENST00000560502 PTPRMP28827 1452 aa23.24■■□□□ 1.31
LDLR-213ENST00000560502 PLEKHD1A6NEE1 506 aa23.22■■□□□ 1.31
LDLR-213ENST00000560502 FANCAO15360 1455 aa23.21■■□□□ 1.31
LDLR-213ENST00000560502 DENND4BO75064 1496 aaPredicted RBP23.21■■□□□ 1.31
LDLR-213ENST00000560502 MADDQ8WXG6 1647 aa23.21■■□□□ 1.31
LDLR-213ENST00000560502 CDK13Q14004 1512 aaKnown RBP23.2■■□□□ 1.3
LDLR-213ENST00000560502 AKNAQ7Z591 1439 aa23.2■■□□□ 1.3
LDLR-213ENST00000560502 ZMYM4Q5VZL5 1548 aa23.19■■□□□ 1.3
LDLR-213ENST00000560502 SIGLEC1Q9BZZ2 1709 aa23.13■■□□□ 1.29
LDLR-213ENST00000560502 HECW1Q76N89 1606 aa23.12■■□□□ 1.29
LDLR-213ENST00000560502 RIMS1Q86UR5 1692 aaKnown RBP23.12■■□□□ 1.29
LDLR-213ENST00000560502 ZFYVE16Q7Z3T8 1539 aa23.11■■□□□ 1.29
LDLR-213ENST00000560502 ARHGAP35Q9NRY4 1499 aa23.11■■□□□ 1.29
LDLR-213ENST00000560502 FMN1Q68DA7 1419 aa23.09■■□□□ 1.29
LDLR-213ENST00000560502 PCF11O94913 1555 aaKnown RBP23.09■■□□□ 1.29
LDLR-213ENST00000560502 ARID4BQ4LE39 1312 aaPredicted RBP23.08■■□□□ 1.29
LDLR-213ENST00000560502 PLCH2O75038 1416 aa23.08■■□□□ 1.29
LDLR-213ENST00000560502 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
LDLR-213ENST00000560502 MAGI2Q86UL8 1455 aa23.08■■□□□ 1.29
LDLR-213ENST00000560502 MYO5CQ9NQX4 1742 aa23.08■■□□□ 1.28
LDLR-213ENST00000560502 YEATS2Q9ULM3 1422 aa23.08■■□□□ 1.28
LDLR-213ENST00000560502 POGZQ7Z3K3 1410 aa23.07■■□□□ 1.28
LDLR-213ENST00000560502 LMTK3Q96Q04 1460 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms