RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 NISCHQ9Y2I1 1504 aa35.17■■■■□ 3.22
LDLR-213ENST00000560502 CCDC180Q9P1Z9 1646 aa31.67■■■□□ 2.66
LDLR-213ENST00000560502 ABCC9O60706 1549 aa31.64■■■□□ 2.66
LDLR-213ENST00000560502 RB1CC1Q8TDY2 1594 aa30.13■■■□□ 2.41
LDLR-213ENST00000560502 NACADO15069 1562 aa29.91■■■□□ 2.38
LDLR-213ENST00000560502 DNAJC5BQ9UF47 199 aa29.75■■■□□ 2.35
LDLR-213ENST00000560502 UNC13AQ9UPW8 1703 aa29.54■■■□□ 2.32
LDLR-213ENST00000560502 MYO15BQ96JP2 1530 aa29.51■■■□□ 2.32
LDLR-213ENST00000560502 DCAF8L2P0C7V8 631 aa29.5■■■□□ 2.31
LDLR-213ENST00000560502 PABPN1Q86U42 306 aaKnown RBP eCLIP29.37■■■□□ 2.29
LDLR-213ENST00000560502 BICRAQ9NZM4 1560 aa29.31■■■□□ 2.28
LDLR-213ENST00000560502 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
LDLR-213ENST00000560502 DCAF1Q9Y4B6 1507 aa29.1■■■□□ 2.25
LDLR-213ENST00000560502 SHROOM4Q9ULL8 1493 aa28.91■■■□□ 2.22
LDLR-213ENST00000560502 SCRIBQ14160 1630 aa28.77■■■□□ 2.2
LDLR-213ENST00000560502 CC2D2AQ9P2K1 1620 aa28.63■■■□□ 2.17
LDLR-213ENST00000560502 EIF4G1Q04637 1599 aaKnown RBP28.56■■■□□ 2.16
LDLR-213ENST00000560502 CECR2Q9BXF3 1484 aa28.53■■■□□ 2.16
LDLR-213ENST00000560502 NCAPD3P42695 1498 aa27.6■■■□□ 2.01
LDLR-213ENST00000560502 ATAD2BQ9ULI0 1458 aa27.5■■□□□ 1.99
LDLR-213ENST00000560502 SMARCA4P51532 1647 aa27.49■■□□□ 1.99
LDLR-213ENST00000560502 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
LDLR-213ENST00000560502 HMGXB3Q12766 1538 aa27.42■■□□□ 1.98
LDLR-213ENST00000560502 DNAJC5Q9H3Z4 198 aa27.38■■□□□ 1.97
LDLR-213ENST00000560502 CUX2O14529 1486 aa27.36■■□□□ 1.97
LDLR-213ENST00000560502 BAZ1AQ9NRL2 1556 aaPredicted RBP27.31■■□□□ 1.96
LDLR-213ENST00000560502 ERCC6Q03468 1493 aa27.3■■□□□ 1.96
LDLR-213ENST00000560502 PEG3Q9GZU2 1588 aa27.25■■□□□ 1.95
LDLR-213ENST00000560502 BAZ1BQ9UIG0 1483 aaKnown RBP27.2■■□□□ 1.95
LDLR-213ENST00000560502 NESP48681 1621 aa27.18■■□□□ 1.94
LDLR-213ENST00000560502 MROH2BQ7Z745 1585 aa27.09■■□□□ 1.93
LDLR-213ENST00000560502 LAMC3Q9Y6N6 1575 aa27.01■■□□□ 1.91
LDLR-213ENST00000560502 THOC2Q8NI27 1593 aaKnown RBP27■■□□□ 1.91
LDLR-213ENST00000560502 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.89
LDLR-213ENST00000560502 PDS5BQ9NTI5 1447 aa26.79■■□□□ 1.88
LDLR-213ENST00000560502 WIZO95785 1651 aa26.77■■□□□ 1.88
LDLR-213ENST00000560502 CADPSQ9ULU8 1353 aa26.71■■□□□ 1.87
LDLR-213ENST00000560502 MRC2Q9UBG0 1479 aa26.61■■□□□ 1.85
LDLR-213ENST00000560502 WDR62O43379 1518 aa26.6■■□□□ 1.85
LDLR-213ENST00000560502 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
LDLR-213ENST00000560502 CEP164Q9UPV0 1460 aa26.47■■□□□ 1.83
LDLR-213ENST00000560502 TOP2AP11388 1531 aaKnown RBP26.44■■□□□ 1.82
LDLR-213ENST00000560502 CFTRP13569 1480 aa26.43■■□□□ 1.82
LDLR-213ENST00000560502 FANCD2Q9BXW9 1451 aa26.42■■□□□ 1.82
LDLR-213ENST00000560502 PRDM2Q13029 1718 aa26.25■■□□□ 1.79
LDLR-213ENST00000560502 URB2Q14146 1524 aaKnown RBP26.24■■□□□ 1.79
LDLR-213ENST00000560502 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
LDLR-213ENST00000560502 TRIM41Q8WV44 630 aa26.05■■□□□ 1.76
LDLR-213ENST00000560502 OSCARQ8IYS5 282 aa25.98■■□□□ 1.75
LDLR-213ENST00000560502 IFT140Q96RY7 1462 aa25.95■■□□□ 1.74
LDLR-213ENST00000560502 TOPBP1Q92547 1522 aa25.94■■□□□ 1.74
LDLR-213ENST00000560502 ZNF608Q9ULD9 1512 aaPredicted RBP25.92■■□□□ 1.74
LDLR-213ENST00000560502 ABCC8Q09428 1581 aa25.86■■□□□ 1.73
LDLR-213ENST00000560502 DNMBPQ6XZF7 1577 aa25.86■■□□□ 1.73
LDLR-213ENST00000560502 EIF4G3O43432 1585 aaKnown RBP25.82■■□□□ 1.72
LDLR-213ENST00000560502 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
LDLR-213ENST00000560502 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
LDLR-213ENST00000560502 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
LDLR-213ENST00000560502 TARBP1Q13395 1621 aaKnown RBP25.76■■□□□ 1.71
LDLR-213ENST00000560502 ARHGEF11O15085 1522 aa25.67■■□□□ 1.7
LDLR-213ENST00000560502 POLA1P09884 1462 aaPredicted RBP25.66■■□□□ 1.7
LDLR-213ENST00000560502 CHD1O14646 1710 aa25.66■■□□□ 1.7
LDLR-213ENST00000560502 AQRO60306 1485 aaKnown RBP eCLIP25.63■■□□□ 1.695e-8■■■■□ 23.3
LDLR-213ENST00000560502 RAD54L2Q9Y4B4 1467 aa25.54■■□□□ 1.68
LDLR-213ENST00000560502 WDR97A6NE52 1622 aa25.51■■□□□ 1.67
LDLR-213ENST00000560502 SOGA1O94964 1423 aa25.49■■□□□ 1.67
LDLR-213ENST00000560502 FGD5Q6ZNL6 1462 aa25.48■■□□□ 1.67
LDLR-213ENST00000560502 CUX1P39880 1505 aa25.47■■□□□ 1.67
LDLR-213ENST00000560502 TDRD9Q8NDG6 1382 aaKnown RBP25.44■■□□□ 1.66
LDLR-213ENST00000560502 ARAP1Q96P48 1450 aa25.41■■□□□ 1.66
LDLR-213ENST00000560502 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
LDLR-213ENST00000560502 FBLN2P98095 1184 aa25.38■■□□□ 1.65
LDLR-213ENST00000560502 CYB5RLQ6IPT4 315 aa25.36■■□□□ 1.65
LDLR-213ENST00000560502 CLASP1Q7Z460 1538 aa25.36■■□□□ 1.65
LDLR-213ENST00000560502 MAGI1Q96QZ7 1491 aaPredicted RBP25.35■■□□□ 1.65
LDLR-213ENST00000560502 GRIN2BQ13224 1484 aa25.32■■□□□ 1.64
LDLR-213ENST00000560502 SYNJ1O43426 1573 aa25.29■■□□□ 1.64
LDLR-213ENST00000560502 PBRM1Q86U86 1689 aa25.28■■□□□ 1.64
LDLR-213ENST00000560502 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
LDLR-213ENST00000560502 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
LDLR-213ENST00000560502 CHMP7Q8WUX9 453 aaPredicted RBP25.21■■□□□ 1.63
LDLR-213ENST00000560502 ABCA10Q8WWZ4 1543 aa25.21■■□□□ 1.63
LDLR-213ENST00000560502 GAPVD1Q14C86 1478 aa25.21■■□□□ 1.63
LDLR-213ENST00000560502 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
LDLR-213ENST00000560502 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
LDLR-213ENST00000560502 TRHP20396 242 aaPredicted RBP25.07■■□□□ 1.6
LDLR-213ENST00000560502 TOP2BQ02880 1626 aa25.04■■□□□ 1.6
LDLR-213ENST00000560502 ADAMTS12P58397 1594 aa25.03■■□□□ 1.6
LDLR-213ENST00000560502 WRNQ14191 1432 aaPredicted RBP eCLIP25.03■■□□□ 1.6
LDLR-213ENST00000560502 GRIN2AQ12879 1464 aa25.01■■□□□ 1.59
LDLR-213ENST00000560502 CEP170Q5SW79 1584 aa24.95■■□□□ 1.58
LDLR-213ENST00000560502 NUP160Q12769 1436 aa24.95■■□□□ 1.58
LDLR-213ENST00000560502 ERCC6L2Q5T890 1561 aa24.93■■□□□ 1.58
LDLR-213ENST00000560502 SHROOM2Q13796 1616 aa24.9■■□□□ 1.58
LDLR-213ENST00000560502 FHAD1B1AJZ9 1412 aa24.89■■□□□ 1.58
LDLR-213ENST00000560502 ERICH3Q5RHP9 1530 aa24.89■■□□□ 1.57
LDLR-213ENST00000560502 RUSC2Q8N2Y8 1516 aa24.68■■□□□ 1.54
LDLR-213ENST00000560502 PRG4Q92954 1404 aaPredicted RBP24.65■■□□□ 1.54
LDLR-213ENST00000560502 KIF13AQ9H1H9 1805 aa24.61■■□□□ 1.53
LDLR-213ENST00000560502 JPH4Q96JJ6 628 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms