RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 JPH4Q96JJ6 628 aa21.28■■□□□ 1
SPG11-219ENST00000559822 IGF1RP08069 1367 aa21.27■■□□□ 1
SPG11-219ENST00000559822 KIAA0586Q9BVV6 1533 aa21.21■□□□□ 0.99
SPG11-219ENST00000559822 CARMIL1Q5VZK9 1371 aa21.17■□□□□ 0.98
SPG11-219ENST00000559822 NPM1P06748 294 aaKnown RBP eCLIP21.08■□□□□ 0.97
SPG11-219ENST00000559822 CARMIL2Q6F5E8 1435 aa21.04■□□□□ 0.96
SPG11-219ENST00000559822 IQGAP2Q13576 1575 aa21.03■□□□□ 0.96
SPG11-219ENST00000559822 ADCY10Q96PN6 1610 aa21.02■□□□□ 0.96
SPG11-219ENST00000559822 MAPKBP1O60336 1514 aa21.02■□□□□ 0.96
SPG11-219ENST00000559822 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
SPG11-219ENST00000559822 KIF13AQ9H1H9 1805 aa21■□□□□ 0.95
SPG11-219ENST00000559822 PTPRGP23470 1445 aa20.98■□□□□ 0.95
SPG11-219ENST00000559822 TNIKQ9UKE5 1360 aa20.97■□□□□ 0.95
SPG11-219ENST00000559822 ABCC10Q5T3U5 1492 aa20.97■□□□□ 0.95
SPG11-219ENST00000559822 FAM69CQ0P6D2 419 aa20.93■□□□□ 0.94
SPG11-219ENST00000559822 DIP2BQ9P265 1576 aa20.92■□□□□ 0.94
SPG11-219ENST00000559822 UGGT2Q9NYU1 1516 aa20.89■□□□□ 0.94
SPG11-219ENST00000559822 TTBK1Q5TCY1 1321 aaPredicted RBP20.89■□□□□ 0.93
SPG11-219ENST00000559822 DISP1Q96F81 1524 aa20.88■□□□□ 0.93
SPG11-219ENST00000559822 ABCC2Q92887 1545 aa20.87■□□□□ 0.93
SPG11-219ENST00000559822 UHRF1BP1LA0JNW5 1464 aa20.85■□□□□ 0.93
SPG11-219ENST00000559822 UACAQ9BZF9 1416 aa20.84■□□□□ 0.93
SPG11-219ENST00000559822 CTTNBP2Q8WZ74 1663 aa20.83■□□□□ 0.92
SPG11-219ENST00000559822 KIAA0556O60303 1618 aa20.82■□□□□ 0.92
SPG11-219ENST00000559822 AEBP2Q6ZN18 517 aaPredicted RBP20.81■□□□□ 0.92
SPG11-219ENST00000559822 PLB1Q6P1J6 1458 aa20.8■□□□□ 0.92
SPG11-219ENST00000559822 PRXQ9BXM0 1461 aa20.79■□□□□ 0.92
SPG11-219ENST00000559822 GOLGA3Q08378 1498 aa20.78■□□□□ 0.92
SPG11-219ENST00000559822 ASXL2Q76L83 1435 aa20.77■□□□□ 0.91
SPG11-219ENST00000559822 KDM5BQ9UGL1 1544 aa20.74■□□□□ 0.91
SPG11-219ENST00000559822 TSPOAP1O95153 1857 aa20.73■□□□□ 0.91
SPG11-219ENST00000559822 GLI2P10070 1586 aa20.72■□□□□ 0.91
SPG11-219ENST00000559822 KDM6BO15054 1643 aa20.72■□□□□ 0.91
SPG11-219ENST00000559822 ZCCHC11Q5TAX3 1644 aaKnown RBP20.69■□□□□ 0.9
SPG11-219ENST00000559822 FAM9AQ8IZU1 332 aaPredicted RBP20.66■□□□□ 0.9
SPG11-219ENST00000559822 CSRNP3Q8WYN3 585 aa20.66■□□□□ 0.9
SPG11-219ENST00000559822 EEA1Q15075 1411 aa20.66■□□□□ 0.9
SPG11-219ENST00000559822 EPRSP07814 1512 aaKnown RBP20.65■□□□□ 0.9
SPG11-219ENST00000559822 ABCA8O94911 1581 aa20.62■□□□□ 0.89
SPG11-219ENST00000559822 WDR7Q9Y4E6 1490 aa20.61■□□□□ 0.89
SPG11-219ENST00000559822 PPRC1Q5VV67 1664 aaKnown RBP20.6■□□□□ 0.89
SPG11-219ENST00000559822 MAP3K4Q9Y6R4 1608 aa20.6■□□□□ 0.89
SPG11-219ENST00000559822 TEX14Q8IWB6 1497 aa20.59■□□□□ 0.89
SPG11-219ENST00000559822 SAMD9Q5K651 1589 aa20.53■□□□□ 0.88
SPG11-219ENST00000559822 P3H3Q8IVL6 736 aa20.5■□□□□ 0.87
SPG11-219ENST00000559822 CFAP43Q8NDM7 1665 aa20.49■□□□□ 0.87
SPG11-219ENST00000559822 CD109Q6YHK3 1445 aa20.46■□□□□ 0.87
SPG11-219ENST00000559822 KCNH8Q96L42 1107 aa20.46■□□□□ 0.87
SPG11-219ENST00000559822 MAGI3Q5TCQ9 1506 aa20.45■□□□□ 0.86
SPG11-219ENST00000559822 KIF21BO75037 1637 aa20.45■□□□□ 0.86
SPG11-219ENST00000559822 RAPGEF6Q8TEU7 1601 aa20.43■□□□□ 0.86
SPG11-219ENST00000559822 ATP10BO94823 1461 aa20.43■□□□□ 0.86
SPG11-219ENST00000559822 COL17A1Q9UMD9 1497 aaPredicted RBP20.43■□□□□ 0.86
SPG11-219ENST00000559822 EFCAB5A4FU69 1503 aa20.39■□□□□ 0.85
SPG11-219ENST00000559822 KDM4FA0A1W2PPD8 638 aa20.39■□□□□ 0.85
SPG11-219ENST00000559822 ARID3CA6NKF2 412 aa20.39■□□□□ 0.85
SPG11-219ENST00000559822 RANGAP1P46060 587 aaPredicted RBP20.37■□□□□ 0.85
SPG11-219ENST00000559822 FHOD3Q2V2M9 1422 aa20.36■□□□□ 0.85
SPG11-219ENST00000559822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.35■□□□□ 0.85
SPG11-219ENST00000559822 HNRNPUL2Q1KMD3 747 aaKnown RBP20.35■□□□□ 0.85
SPG11-219ENST00000559822 ABCA9Q8IUA7 1624 aa20.34■□□□□ 0.85
SPG11-219ENST00000559822 NUP153P49790 1475 aaKnown RBP20.33■□□□□ 0.85
SPG11-219ENST00000559822 CHIC1Q5VXU3 224 aa20.33■□□□□ 0.85
SPG11-219ENST00000559822 PHLDB1Q86UU1 1377 aa20.32■□□□□ 0.84
SPG11-219ENST00000559822 ADGRL1O94910 1474 aa20.3■□□□□ 0.84
SPG11-219ENST00000559822 ARAP3Q8WWN8 1544 aa20.28■□□□□ 0.84
SPG11-219ENST00000559822 UBTFP17480 764 aaKnown RBP20.27■□□□□ 0.84
SPG11-219ENST00000559822 NEO1Q92859 1461 aa20.25■□□□□ 0.83
SPG11-219ENST00000559822 PLEKHD1A6NEE1 506 aa20.25■□□□□ 0.83
SPG11-219ENST00000559822 FMN1Q68DA7 1419 aa20.2■□□□□ 0.82
SPG11-219ENST00000559822 EHMT2Q96KQ7 1210 aa20.19■□□□□ 0.82
SPG11-219ENST00000559822 ARHGAP35Q9NRY4 1499 aa20.16■□□□□ 0.82
SPG11-219ENST00000559822 CFAP74Q9C0B2 1584 aa20.16■□□□□ 0.82
SPG11-219ENST00000559822 HECW1Q76N89 1606 aa20.16■□□□□ 0.82
SPG11-219ENST00000559822 CDK13Q14004 1512 aaKnown RBP20.13■□□□□ 0.81
SPG11-219ENST00000559822 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.13■□□□□ 0.81
SPG11-219ENST00000559822 RAPGEF3O95398 923 aa20.11■□□□□ 0.81
SPG11-219ENST00000559822 FANCAO15360 1455 aa20.11■□□□□ 0.81
SPG11-219ENST00000559822 TTC37Q6PGP7 1564 aa20.1■□□□□ 0.81
SPG11-219ENST00000559822 ATP1B4Q9UN42 357 aaPredicted RBP20.1■□□□□ 0.81
SPG11-219ENST00000559822 CDK11AQ9UQ88 783 aaPredicted RBP20.1■□□□□ 0.81
SPG11-219ENST00000559822 DENND4BO75064 1496 aaPredicted RBP20.09■□□□□ 0.81
SPG11-219ENST00000559822 AKNAQ7Z591 1439 aa20.09■□□□□ 0.81
SPG11-219ENST00000559822 FRMPD1Q5SYB0 1578 aa20.08■□□□□ 0.81
SPG11-219ENST00000559822 RICTORQ6R327 1708 aa20.04■□□□□ 0.8
SPG11-219ENST00000559822 PLCH2O75038 1416 aa20.02■□□□□ 0.8
SPG11-219ENST00000559822 ARHGEF40Q8TER5 1519 aa20.02■□□□□ 0.8
SPG11-219ENST00000559822 CLIP1P30622 1438 aa20.02■□□□□ 0.79
SPG11-219ENST00000559822 KIF14Q15058 1648 aa20.01■□□□□ 0.79
SPG11-219ENST00000559822 ZMYM4Q5VZL5 1548 aa20■□□□□ 0.79
SPG11-219ENST00000559822 TROQ12816 1431 aaPredicted RBP20■□□□□ 0.79
SPG11-219ENST00000559822 MYO5CQ9NQX4 1742 aa19.99■□□□□ 0.79
SPG11-219ENST00000559822 HECW2Q9P2P5 1572 aa19.99■□□□□ 0.79
SPG11-219ENST00000559822 ARID4BQ4LE39 1312 aaPredicted RBP19.99■□□□□ 0.79
SPG11-219ENST00000559822 ADAMTSL3P82987 1691 aa19.98■□□□□ 0.79
SPG11-219ENST00000559822 CCDC18Q5T9S5 1454 aa19.98■□□□□ 0.79
SPG11-219ENST00000559822 MAGI2Q86UL8 1455 aa19.98■□□□□ 0.79
SPG11-219ENST00000559822 CASKIN1Q8WXD9 1431 aa19.97■□□□□ 0.79
SPG11-219ENST00000559822 EFCAB2Q5VUJ9 269 aa19.97■□□□□ 0.79
SPG11-219ENST00000559822 BCORL1Q5H9F3 1711 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms