RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 CEP170Q5SW79 1584 aa20.62■□□□□ 0.89
USP3-214ENST00000559718 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
USP3-214ENST00000559718 NUP160Q12769 1436 aa20.61■□□□□ 0.89
USP3-214ENST00000559718 ERCC6L2Q5T890 1561 aa20.6■□□□□ 0.89
USP3-214ENST00000559718 POTEDQ86YR6 584 aa20.59■□□□□ 0.89
USP3-214ENST00000559718 ERICH3Q5RHP9 1530 aa20.58■□□□□ 0.89
USP3-214ENST00000559718 SHROOM2Q13796 1616 aa20.49■□□□□ 0.87
USP3-214ENST00000559718 JPH4Q96JJ6 628 aa20.42■□□□□ 0.86
USP3-214ENST00000559718 PRG4Q92954 1404 aaPredicted RBP20.42■□□□□ 0.86
USP3-214ENST00000559718 IGF1RP08069 1367 aa20.38■□□□□ 0.85
USP3-214ENST00000559718 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
USP3-214ENST00000559718 KIF27Q86VH2 1401 aa20.36■□□□□ 0.85
USP3-214ENST00000559718 CUL7Q14999 1698 aa20.28■□□□□ 0.84
USP3-214ENST00000559718 KIAA0586Q9BVV6 1533 aa20.27■□□□□ 0.83
USP3-214ENST00000559718 CARMIL1Q5VZK9 1371 aa20.23■□□□□ 0.83
USP3-214ENST00000559718 KIF13AQ9H1H9 1805 aa20.2■□□□□ 0.82
USP3-214ENST00000559718 ADCY10Q96PN6 1610 aa20.18■□□□□ 0.82
USP3-214ENST00000559718 NPM1P06748 294 aaKnown RBP eCLIP20.15■□□□□ 0.82
USP3-214ENST00000559718 FAM69CQ0P6D2 419 aa20.13■□□□□ 0.81
USP3-214ENST00000559718 ABCC10Q5T3U5 1492 aa20.11■□□□□ 0.81
USP3-214ENST00000559718 TTBK1Q5TCY1 1321 aaPredicted RBP20.11■□□□□ 0.81
USP3-214ENST00000559718 MAPKBP1O60336 1514 aa20.11■□□□□ 0.81
USP3-214ENST00000559718 PTPRGP23470 1445 aa20.1■□□□□ 0.81
USP3-214ENST00000559718 IQGAP2Q13576 1575 aa20.08■□□□□ 0.8
USP3-214ENST00000559718 DIP2BQ9P265 1576 aa20.06■□□□□ 0.8
USP3-214ENST00000559718 CARMIL2Q6F5E8 1435 aa20.05■□□□□ 0.8
USP3-214ENST00000559718 TNIKQ9UKE5 1360 aa20.05■□□□□ 0.8
USP3-214ENST00000559718 RAPGEF2Q9Y4G8 1499 aa20.04■□□□□ 0.8
USP3-214ENST00000559718 DISP1Q96F81 1524 aa20.01■□□□□ 0.79
USP3-214ENST00000559718 ABCC2Q92887 1545 aa19.97■□□□□ 0.79
USP3-214ENST00000559718 UGGT2Q9NYU1 1516 aa19.95■□□□□ 0.78
USP3-214ENST00000559718 TSPOAP1O95153 1857 aa19.94■□□□□ 0.78
USP3-214ENST00000559718 UACAQ9BZF9 1416 aa19.94■□□□□ 0.78
USP3-214ENST00000559718 ASXL2Q76L83 1435 aa19.93■□□□□ 0.78
USP3-214ENST00000559718 UHRF1BP1LA0JNW5 1464 aa19.92■□□□□ 0.78
USP3-214ENST00000559718 KIAA0556O60303 1618 aa19.9■□□□□ 0.78
USP3-214ENST00000559718 KDM6BO15054 1643 aa19.87■□□□□ 0.77
USP3-214ENST00000559718 PLB1Q6P1J6 1458 aa19.87■□□□□ 0.77
USP3-214ENST00000559718 KDM5BQ9UGL1 1544 aa19.85■□□□□ 0.77
USP3-214ENST00000559718 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
USP3-214ENST00000559718 CTTNBP2Q8WZ74 1663 aa19.84■□□□□ 0.77
USP3-214ENST00000559718 GLI2P10070 1586 aa19.83■□□□□ 0.76
USP3-214ENST00000559718 ZCCHC11Q5TAX3 1644 aaKnown RBP19.81■□□□□ 0.76
USP3-214ENST00000559718 PPRC1Q5VV67 1664 aaKnown RBP19.81■□□□□ 0.76
USP3-214ENST00000559718 EPRSP07814 1512 aaKnown RBP19.79■□□□□ 0.76
USP3-214ENST00000559718 GOLGA3Q08378 1498 aa19.76■□□□□ 0.75
USP3-214ENST00000559718 KDM4FA0A1W2PPD8 638 aa19.73■□□□□ 0.75
USP3-214ENST00000559718 MAP3K4Q9Y6R4 1608 aa19.73■□□□□ 0.75
USP3-214ENST00000559718 ABCA8O94911 1581 aa19.72■□□□□ 0.75
USP3-214ENST00000559718 WDR7Q9Y4E6 1490 aa19.72■□□□□ 0.75
USP3-214ENST00000559718 COL17A1Q9UMD9 1497 aaPredicted RBP19.71■□□□□ 0.75
USP3-214ENST00000559718 P3H3Q8IVL6 736 aa19.7■□□□□ 0.74
USP3-214ENST00000559718 CSRNP3Q8WYN3 585 aa19.7■□□□□ 0.74
USP3-214ENST00000559718 KCNH8Q96L42 1107 aa19.66■□□□□ 0.74
USP3-214ENST00000559718 ARID3CA6NKF2 412 aa19.65■□□□□ 0.74
USP3-214ENST00000559718 TEX14Q8IWB6 1497 aa19.65■□□□□ 0.74
USP3-214ENST00000559718 CD109Q6YHK3 1445 aa19.6■□□□□ 0.73
USP3-214ENST00000559718 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
USP3-214ENST00000559718 SAMD9Q5K651 1589 aa19.58■□□□□ 0.73
USP3-214ENST00000559718 ATP10BO94823 1461 aa19.58■□□□□ 0.72
USP3-214ENST00000559718 RANGAP1P46060 587 aaPredicted RBP19.57■□□□□ 0.72
USP3-214ENST00000559718 EEA1Q15075 1411 aa19.57■□□□□ 0.72
USP3-214ENST00000559718 MAGI3Q5TCQ9 1506 aa19.56■□□□□ 0.72
USP3-214ENST00000559718 CFAP43Q8NDM7 1665 aa19.56■□□□□ 0.72
USP3-214ENST00000559718 ADGRL1O94910 1474 aa19.54■□□□□ 0.72
USP3-214ENST00000559718 SCAF1Q9H7N4 1312 aaKnown RBP19.52■□□□□ 0.72
USP3-214ENST00000559718 MAPK8IP2Q13387 824 aaPredicted RBP19.52■□□□□ 0.72
USP3-214ENST00000559718 RAPGEF6Q8TEU7 1601 aa19.51■□□□□ 0.71
USP3-214ENST00000559718 FHOD3Q2V2M9 1422 aa19.5■□□□□ 0.71
USP3-214ENST00000559718 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.46■□□□□ 0.71
USP3-214ENST00000559718 HNRNPUL2Q1KMD3 747 aaKnown RBP19.46■□□□□ 0.71
USP3-214ENST00000559718 NUP153P49790 1475 aaKnown RBP19.46■□□□□ 0.71
USP3-214ENST00000559718 KIF21BO75037 1637 aa19.43■□□□□ 0.7
USP3-214ENST00000559718 ABCA9Q8IUA7 1624 aa19.43■□□□□ 0.7
USP3-214ENST00000559718 EHMT2Q96KQ7 1210 aa19.43■□□□□ 0.7
USP3-214ENST00000559718 ARAP3Q8WWN8 1544 aa19.41■□□□□ 0.7
USP3-214ENST00000559718 DMRT2Q9Y5R5 561 aa19.39■□□□□ 0.69
USP3-214ENST00000559718 EFCAB5A4FU69 1503 aa19.36■□□□□ 0.69
USP3-214ENST00000559718 RAPGEF3O95398 923 aa19.36■□□□□ 0.69
USP3-214ENST00000559718 PHLDB1Q86UU1 1377 aa19.34■□□□□ 0.69
USP3-214ENST00000559718 PLEKHD1A6NEE1 506 aa19.34■□□□□ 0.69
USP3-214ENST00000559718 UBTFP17480 764 aaKnown RBP19.33■□□□□ 0.68
USP3-214ENST00000559718 NEO1Q92859 1461 aa19.33■□□□□ 0.68
USP3-214ENST00000559718 FRMPD1Q5SYB0 1578 aa19.29■□□□□ 0.68
USP3-214ENST00000559718 CDK13Q14004 1512 aaKnown RBP19.29■□□□□ 0.68
USP3-214ENST00000559718 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP3-214ENST00000559718 HECW2Q9P2P5 1572 aa19.27■□□□□ 0.67
USP3-214ENST00000559718 TTC37Q6PGP7 1564 aa19.25■□□□□ 0.67
USP3-214ENST00000559718 ARHGAP35Q9NRY4 1499 aa19.25■□□□□ 0.67
USP3-214ENST00000559718 ATP1B4Q9UN42 357 aaPredicted RBP19.23■□□□□ 0.67
USP3-214ENST00000559718 AKNAQ7Z591 1439 aa19.23■□□□□ 0.67
USP3-214ENST00000559718 FANCAO15360 1455 aa19.22■□□□□ 0.67
USP3-214ENST00000559718 DENND4BO75064 1496 aaPredicted RBP19.22■□□□□ 0.67
USP3-214ENST00000559718 FMN1Q68DA7 1419 aa19.2■□□□□ 0.66
USP3-214ENST00000559718 PPP4R3CPQ6ZMV5 832 aa19.2■□□□□ 0.66
USP3-214ENST00000559718 ADAMTSL3P82987 1691 aa19.19■□□□□ 0.66
USP3-214ENST00000559718 RICTORQ6R327 1708 aa19.19■□□□□ 0.66
USP3-214ENST00000559718 ARID4BQ4LE39 1312 aaPredicted RBP19.18■□□□□ 0.66
USP3-214ENST00000559718 HECW1Q76N89 1606 aa19.18■□□□□ 0.66
USP3-214ENST00000559718 CFAP74Q9C0B2 1584 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms