RNA–Protein interactions for RNA: ENST00000558958.1

CLPX-203, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 1,493 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-203ENST00000558958 CEP170Q5SW79 1584 aa29.17■■■□□ 2.26
CLPX-203ENST00000558958 CTTNBP2Q8WZ74 1663 aa29.15■■■□□ 2.26
CLPX-203ENST00000558958 KIAA0586Q9BVV6 1533 aa29.12■■■□□ 2.25
CLPX-203ENST00000558958 CEP162Q5TB80 1403 aa29.07■■■□□ 2.24
CLPX-203ENST00000558958 IQGAP2Q13576 1575 aa29.05■■■□□ 2.24
CLPX-203ENST00000558958 RANGAP1P46060 587 aaPredicted RBP29■■■□□ 2.23
CLPX-203ENST00000558958 CLIP1P30622 1438 aa29■■■□□ 2.23
CLPX-203ENST00000558958 OSCARQ8IYS5 282 aa28.98■■■□□ 2.23
CLPX-203ENST00000558958 CLASP1Q7Z460 1538 aa28.96■■■□□ 2.23
CLPX-203ENST00000558958 UGGT2Q9NYU1 1516 aa28.94■■■□□ 2.22
CLPX-203ENST00000558958 JPH4Q96JJ6 628 aa28.92■■■□□ 2.22
CLPX-203ENST00000558958 ARHGAP35Q9NRY4 1499 aa28.89■■■□□ 2.22
CLPX-203ENST00000558958 EFCAB5A4FU69 1503 aa28.88■■■□□ 2.21
CLPX-203ENST00000558958 SAMD9Q5K651 1589 aa28.86■■■□□ 2.21
CLPX-203ENST00000558958 SHROOM2Q13796 1616 aa28.85■■■□□ 2.21
CLPX-203ENST00000558958 DISP1Q96F81 1524 aa28.81■■■□□ 2.2
CLPX-203ENST00000558958 P3H3Q8IVL6 736 aa28.79■■■□□ 2.2
CLPX-203ENST00000558958 ARAP1Q96P48 1450 aa28.79■■■□□ 2.2
CLPX-203ENST00000558958 PRG4Q92954 1404 aaPredicted RBP28.78■■■□□ 2.2
CLPX-203ENST00000558958 KIAA0556O60303 1618 aa28.76■■■□□ 2.2
CLPX-203ENST00000558958 CARMIL2Q6F5E8 1435 aa28.76■■■□□ 2.2
CLPX-203ENST00000558958 FHOD3Q2V2M9 1422 aa28.75■■■□□ 2.19
CLPX-203ENST00000558958 ERCC6L2Q5T890 1561 aa28.66■■■□□ 2.18
CLPX-203ENST00000558958 VPS8Q8N3P4 1428 aa28.66■■■□□ 2.18
CLPX-203ENST00000558958 FMN1Q68DA7 1419 aa28.62■■■□□ 2.17
CLPX-203ENST00000558958 PTPRGP23470 1445 aa28.55■■■□□ 2.16
CLPX-203ENST00000558958 TTBK1Q5TCY1 1321 aaPredicted RBP28.54■■■□□ 2.16
CLPX-203ENST00000558958 CASKIN1Q8WXD9 1431 aa28.49■■■□□ 2.15
CLPX-203ENST00000558958 ARHGEF11O15085 1522 aa28.48■■■□□ 2.15
CLPX-203ENST00000558958 PCF11O94913 1555 aaKnown RBP28.47■■■□□ 2.15
CLPX-203ENST00000558958 FYCO1Q9BQS8 1478 aa28.45■■■□□ 2.15
CLPX-203ENST00000558958 PLB1Q6P1J6 1458 aa28.43■■■□□ 2.14
CLPX-203ENST00000558958 ABCA8O94911 1581 aa28.41■■■□□ 2.14
CLPX-203ENST00000558958 RAPGEF6Q8TEU7 1601 aa28.4■■■□□ 2.14
CLPX-203ENST00000558958 ATP1B4Q9UN42 357 aaPredicted RBP28.39■■■□□ 2.13
CLPX-203ENST00000558958 RIMBP3CA6NJZ7 1639 aa28.38■■■□□ 2.13
CLPX-203ENST00000558958 RIMBP3BA6NNM3 1639 aa28.38■■■□□ 2.13
CLPX-203ENST00000558958 RIMBP3Q9UFD9 1639 aa28.38■■■□□ 2.13
CLPX-203ENST00000558958 UACAQ9BZF9 1416 aa28.38■■■□□ 2.13
CLPX-203ENST00000558958 HECW1Q76N89 1606 aa28.36■■■□□ 2.13
CLPX-203ENST00000558958 NUP153P49790 1475 aaKnown RBP28.34■■■□□ 2.13
CLPX-203ENST00000558958 APLP2Q06481 763 aa28.32■■■□□ 2.12
CLPX-203ENST00000558958 ABCC2Q92887 1545 aa28.3■■■□□ 2.12
CLPX-203ENST00000558958 UHRF1BP1LA0JNW5 1464 aa28.3■■■□□ 2.12
CLPX-203ENST00000558958 EPRSP07814 1512 aaKnown RBP28.29■■■□□ 2.12
CLPX-203ENST00000558958 MAP3K1Q13233 1512 aa28.29■■■□□ 2.12
CLPX-203ENST00000558958 LRRIQ1Q96JM4 1722 aa28.27■■■□□ 2.12
CLPX-203ENST00000558958 CCDC18Q5T9S5 1454 aa28.27■■■□□ 2.12
CLPX-203ENST00000558958 TIAM1Q13009 1591 aa28.24■■■□□ 2.11
CLPX-203ENST00000558958 ARID3CA6NKF2 412 aa28.23■■■□□ 2.11
CLPX-203ENST00000558958 CDK13Q14004 1512 aaKnown RBP28.22■■■□□ 2.11
CLPX-203ENST00000558958 CFAP43Q8NDM7 1665 aa28.21■■■□□ 2.11
CLPX-203ENST00000558958 ADCY10Q96PN6 1610 aa28.21■■■□□ 2.11
CLPX-203ENST00000558958 ATP10BO94823 1461 aa28.21■■■□□ 2.11
CLPX-203ENST00000558958 CYB5RLQ6IPT4 315 aa28.21■■■□□ 2.11
CLPX-203ENST00000558958 KANK4Q5T7N3 995 aaPredicted RBP28.17■■■□□ 2.1
CLPX-203ENST00000558958 DNAJC5Q9H3Z4 198 aa28.17■■■□□ 2.1
CLPX-203ENST00000558958 KDM5BQ9UGL1 1544 aa28.16■■■□□ 2.1
CLPX-203ENST00000558958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.15■■■□□ 2.1
CLPX-203ENST00000558958 HNRNPUL2Q1KMD3 747 aaKnown RBP28.15■■■□□ 2.1
CLPX-203ENST00000558958 PPARGC1BQ86YN6 1023 aaKnown RBP28.15■■■□□ 2.1
CLPX-203ENST00000558958 LRRC9Q6ZRR7 1453 aa28.13■■■□□ 2.09
CLPX-203ENST00000558958 CDK11AQ9UQ88 783 aaPredicted RBP28.1■■■□□ 2.09
CLPX-203ENST00000558958 ZCCHC11Q5TAX3 1644 aaKnown RBP28.09■■■□□ 2.09
CLPX-203ENST00000558958 MAGI3Q5TCQ9 1506 aa28.08■■■□□ 2.09
CLPX-203ENST00000558958 MTUS2Q5JR59 1369 aa28.08■■■□□ 2.09
CLPX-203ENST00000558958 EHBP1L1Q8N3D4 1523 aa28.03■■■□□ 2.08
CLPX-203ENST00000558958 PLEKHD1A6NEE1 506 aa28.03■■■□□ 2.08
CLPX-203ENST00000558958 NPM1P06748 294 aaKnown RBP eCLIP28.03■■■□□ 2.08
CLPX-203ENST00000558958 TROQ12816 1431 aaPredicted RBP28.01■■■□□ 2.07
CLPX-203ENST00000558958 ASXL2Q76L83 1435 aa27.92■■■□□ 2.06
CLPX-203ENST00000558958 SUPT6HQ7KZ85 1726 aaKnown RBP27.91■■■□□ 2.06
CLPX-203ENST00000558958 NCOA2Q15596 1464 aa27.9■■■□□ 2.06
CLPX-203ENST00000558958 WDR7Q9Y4E6 1490 aa27.9■■■□□ 2.06
CLPX-203ENST00000558958 MAPKBP1O60336 1514 aa27.87■■■□□ 2.05
CLPX-203ENST00000558958 KIF14Q15058 1648 aa27.86■■■□□ 2.05
CLPX-203ENST00000558958 PHLDB1Q86UU1 1377 aa27.85■■■□□ 2.05
CLPX-203ENST00000558958 KCNH8Q96L42 1107 aa27.83■■■□□ 2.05
CLPX-203ENST00000558958 ABCC10Q5T3U5 1492 aa27.8■■■□□ 2.04
CLPX-203ENST00000558958 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.77■■■□□ 2.04
CLPX-203ENST00000558958 CCNB3Q8WWL7 1395 aa27.77■■■□□ 2.04
CLPX-203ENST00000558958 MYOM3Q5VTT5 1437 aa27.76■■■□□ 2.03
CLPX-203ENST00000558958 TTC37Q6PGP7 1564 aa27.72■■■□□ 2.03
CLPX-203ENST00000558958 GPATCH8Q9UKJ3 1502 aaKnown RBP27.72■■■□□ 2.03
CLPX-203ENST00000558958 RRBP1Q9P2E9 1410 aaKnown RBP27.7■■■□□ 2.03
CLPX-203ENST00000558958 TRIM26Q12899 539 aaPredicted RBP27.7■■■□□ 2.02
CLPX-203ENST00000558958 FGD6Q6ZV73 1430 aa27.69■■■□□ 2.02
CLPX-203ENST00000558958 ABCA9Q8IUA7 1624 aa27.69■■■□□ 2.02
CLPX-203ENST00000558958 MIA2Q96PC5 1412 aa27.67■■■□□ 2.02
CLPX-203ENST00000558958 CDC42BPAQ5VT25 1732 aa27.66■■■□□ 2.02
CLPX-203ENST00000558958 ITSN2Q9NZM3 1697 aa27.66■■■□□ 2.02
CLPX-203ENST00000558958 GLI2P10070 1586 aa27.63■■■□□ 2.01
CLPX-203ENST00000558958 CFDP1Q9UEE9 299 aaPredicted RBP27.63■■■□□ 2.01
CLPX-203ENST00000558958 PLCH2O75038 1416 aa27.62■■■□□ 2.01
CLPX-203ENST00000558958 DIP2BQ9P265 1576 aa27.61■■■□□ 2.01
CLPX-203ENST00000558958 PREX2Q70Z35 1606 aa27.61■■■□□ 2.01
CLPX-203ENST00000558958 MYO5CQ9NQX4 1742 aa27.61■■■□□ 2.01
CLPX-203ENST00000558958 CDC42BPBQ9Y5S2 1711 aa27.58■■■□□ 2.01
CLPX-203ENST00000558958 PTPN23Q9H3S7 1636 aa27.58■■■□□ 2.01
CLPX-203ENST00000558958 FAM69CQ0P6D2 419 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms