RNA–Protein interactions for RNA: ENST00000558958.1

CLPX-203, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 1,493 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-203ENST00000558958 NISCHQ9Y2I1 1504 aa42.34■■■■■ 4.37
CLPX-203ENST00000558958 CCDC180Q9P1Z9 1646 aa37.21■■■■□ 3.55
CLPX-203ENST00000558958 ABCC9O60706 1549 aa35.68■■■■□ 3.3
CLPX-203ENST00000558958 ZCCHC6Q5VYS8 1495 aaKnown RBP35.45■■■■□ 3.27
CLPX-203ENST00000558958 DCAF8L2P0C7V8 631 aa35.07■■■■□ 3.2
CLPX-203ENST00000558958 DCAF1Q9Y4B6 1507 aa35.06■■■■□ 3.2
CLPX-203ENST00000558958 MYO15BQ96JP2 1530 aa34.89■■■■□ 3.18
CLPX-203ENST00000558958 NACADO15069 1562 aa34.82■■■■□ 3.16
CLPX-203ENST00000558958 RB1CC1Q8TDY2 1594 aa34.65■■■■□ 3.14
CLPX-203ENST00000558958 SCRIBQ14160 1630 aa34.07■■■■□ 3.04
CLPX-203ENST00000558958 SHROOM4Q9ULL8 1493 aa34■■■■□ 3.03
CLPX-203ENST00000558958 UNC13AQ9UPW8 1703 aa33.86■■■■□ 3.01
CLPX-203ENST00000558958 BICRAQ9NZM4 1560 aa33.6■■■□□ 2.97
CLPX-203ENST00000558958 PABPN1Q86U42 306 aaKnown RBP eCLIP33.51■■■□□ 2.96
CLPX-203ENST00000558958 CECR2Q9BXF3 1484 aa32.91■■■□□ 2.86
CLPX-203ENST00000558958 BAZ1AQ9NRL2 1556 aaPredicted RBP32.74■■■□□ 2.83
CLPX-203ENST00000558958 MROH2BQ7Z745 1585 aa32.66■■■□□ 2.82
CLPX-203ENST00000558958 SMARCA4P51532 1647 aa32.66■■■□□ 2.82
CLPX-203ENST00000558958 EIF4G1Q04637 1599 aaKnown RBP32.64■■■□□ 2.82
CLPX-203ENST00000558958 RSF1Q96T23 1441 aaPredicted RBP32.6■■■□□ 2.81
CLPX-203ENST00000558958 SUPT5HO00267 1087 aaKnown RBP32.42■■■□□ 2.78
CLPX-203ENST00000558958 WIZO95785 1651 aa32.33■■■□□ 2.77
CLPX-203ENST00000558958 PEG3Q9GZU2 1588 aa32.33■■■□□ 2.77
CLPX-203ENST00000558958 CC2D2AQ9P2K1 1620 aa32.3■■■□□ 2.76
CLPX-203ENST00000558958 ATAD2BQ9ULI0 1458 aa32.29■■■□□ 2.76
CLPX-203ENST00000558958 SMARCA2P51531 1590 aa32.27■■■□□ 2.76
CLPX-203ENST00000558958 NCAPD3P42695 1498 aa32.15■■■□□ 2.74
CLPX-203ENST00000558958 BAZ1BQ9UIG0 1483 aaKnown RBP32.06■■■□□ 2.72
CLPX-203ENST00000558958 HMGXB3Q12766 1538 aa32.04■■■□□ 2.72
CLPX-203ENST00000558958 DNAJC5BQ9UF47 199 aa32.04■■■□□ 2.72
CLPX-203ENST00000558958 TOP2AP11388 1531 aaKnown RBP32.03■■■□□ 2.72
CLPX-203ENST00000558958 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
CLPX-203ENST00000558958 CADPSQ9ULU8 1353 aa31.27■■■□□ 2.6
CLPX-203ENST00000558958 CFTRP13569 1480 aa31.25■■■□□ 2.59
CLPX-203ENST00000558958 LAMC3Q9Y6N6 1575 aa31.13■■■□□ 2.57
CLPX-203ENST00000558958 NESP48681 1621 aa31.13■■■□□ 2.57
CLPX-203ENST00000558958 PRDM2Q13029 1718 aa31.01■■■□□ 2.55
CLPX-203ENST00000558958 PDS5BQ9NTI5 1447 aa30.92■■■□□ 2.54
CLPX-203ENST00000558958 FANCD2Q9BXW9 1451 aa30.89■■■□□ 2.54
CLPX-203ENST00000558958 ABCC8Q09428 1581 aa30.77■■■□□ 2.52
CLPX-203ENST00000558958 CHIC1Q5VXU3 224 aa30.76■■■□□ 2.52
CLPX-203ENST00000558958 CEP164Q9UPV0 1460 aa30.76■■■□□ 2.52
CLPX-203ENST00000558958 KIF21AQ7Z4S6 1674 aa30.74■■■□□ 2.51
CLPX-203ENST00000558958 WRNQ14191 1432 aaPredicted RBP eCLIP30.7■■■□□ 2.58e-8■■■■■ 37.6
CLPX-203ENST00000558958 ERCC6Q03468 1493 aa30.67■■■□□ 2.5
CLPX-203ENST00000558958 CUX1P39880 1505 aa30.58■■■□□ 2.49
CLPX-203ENST00000558958 TRIM41Q8WV44 630 aa30.57■■■□□ 2.48
CLPX-203ENST00000558958 SYNJ1O43426 1573 aa30.57■■■□□ 2.48
CLPX-203ENST00000558958 MRC2Q9UBG0 1479 aa30.55■■■□□ 2.48
CLPX-203ENST00000558958 URB2Q14146 1524 aaKnown RBP30.54■■■□□ 2.48
CLPX-203ENST00000558958 TOP2BQ02880 1626 aa30.53■■■□□ 2.48
CLPX-203ENST00000558958 DNMBPQ6XZF7 1577 aa30.51■■■□□ 2.47
CLPX-203ENST00000558958 TOPBP1Q92547 1522 aa30.5■■■□□ 2.47
CLPX-203ENST00000558958 BIVM-ERCC5R4GMW8 1640 aa30.49■■■□□ 2.47
CLPX-203ENST00000558958 THOC2Q8NI27 1593 aaKnown RBP30.44■■■□□ 2.46
CLPX-203ENST00000558958 WDR62O43379 1518 aa30.41■■■□□ 2.46
CLPX-203ENST00000558958 FGD5Q6ZNL6 1462 aa30.34■■■□□ 2.45
CLPX-203ENST00000558958 POLA1P09884 1462 aaPredicted RBP30.3■■■□□ 2.44
CLPX-203ENST00000558958 SOGA1O94964 1423 aa30.19■■■□□ 2.42
CLPX-203ENST00000558958 CUX2O14529 1486 aa30.17■■■□□ 2.42
CLPX-203ENST00000558958 RAD54L2Q9Y4B4 1467 aa30.17■■■□□ 2.42
CLPX-203ENST00000558958 ABCA10Q8WWZ4 1543 aa30.09■■■□□ 2.41
CLPX-203ENST00000558958 IFT140Q96RY7 1462 aa30.09■■■□□ 2.41
CLPX-203ENST00000558958 TARBP1Q13395 1621 aaKnown RBP30.09■■■□□ 2.41
CLPX-203ENST00000558958 WDR97A6NE52 1622 aa30.02■■■□□ 2.4
CLPX-203ENST00000558958 RUSC2Q8N2Y8 1516 aa30■■■□□ 2.39
CLPX-203ENST00000558958 KIF27Q86VH2 1401 aa29.99■■■□□ 2.39
CLPX-203ENST00000558958 EEA1Q15075 1411 aa29.96■■■□□ 2.39
CLPX-203ENST00000558958 TDRD9Q8NDG6 1382 aaKnown RBP29.94■■■□□ 2.38
CLPX-203ENST00000558958 FAM9AQ8IZU1 332 aaPredicted RBP29.93■■■□□ 2.38
CLPX-203ENST00000558958 ZNF608Q9ULD9 1512 aaPredicted RBP29.91■■■□□ 2.38
CLPX-203ENST00000558958 ABCA5Q8WWZ7 1642 aa29.88■■■□□ 2.37
CLPX-203ENST00000558958 AQRO60306 1485 aaKnown RBP eCLIP29.85■■■□□ 2.375e-10■■□□□ 14.2
CLPX-203ENST00000558958 GAPVD1Q14C86 1478 aa29.85■■■□□ 2.37
CLPX-203ENST00000558958 CSRNP3Q8WYN3 585 aa29.83■■■□□ 2.37
CLPX-203ENST00000558958 IGF1RP08069 1367 aa29.79■■■□□ 2.36
CLPX-203ENST00000558958 EIF4G3O43432 1585 aaKnown RBP29.79■■■□□ 2.36
CLPX-203ENST00000558958 ERICH3Q5RHP9 1530 aa29.73■■■□□ 2.35
CLPX-203ENST00000558958 GRIN2BQ13224 1484 aa29.72■■■□□ 2.35
CLPX-203ENST00000558958 PBRM1Q86U86 1689 aa29.69■■■□□ 2.34
CLPX-203ENST00000558958 PRXQ9BXM0 1461 aa29.64■■■□□ 2.34
CLPX-203ENST00000558958 CARMIL1Q5VZK9 1371 aa29.62■■■□□ 2.33
CLPX-203ENST00000558958 CUL7Q14999 1698 aa29.6■■■□□ 2.33
CLPX-203ENST00000558958 KIF21BO75037 1637 aa29.58■■■□□ 2.33
CLPX-203ENST00000558958 SNAPC4Q5SXM2 1469 aa29.57■■■□□ 2.32
CLPX-203ENST00000558958 MAGI1Q96QZ7 1491 aaPredicted RBP29.55■■■□□ 2.32
CLPX-203ENST00000558958 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
CLPX-203ENST00000558958 ADAMTS12P58397 1594 aa29.53■■■□□ 2.32
CLPX-203ENST00000558958 RAPGEF2Q9Y4G8 1499 aa29.52■■■□□ 2.32
CLPX-203ENST00000558958 LOC105371045A0A1W2PR82 267 aa29.52■■■□□ 2.32
CLPX-203ENST00000558958 EHMT2Q96KQ7 1210 aa29.48■■■□□ 2.31
CLPX-203ENST00000558958 GOLGA3Q08378 1498 aa29.48■■■□□ 2.31
CLPX-203ENST00000558958 SYNJ2O15056 1496 aa29.43■■■□□ 2.3
CLPX-203ENST00000558958 CHMP7Q8WUX9 453 aaPredicted RBP29.37■■■□□ 2.29
CLPX-203ENST00000558958 UBTFP17480 764 aaKnown RBP29.36■■■□□ 2.29
CLPX-203ENST00000558958 GRIN2AQ12879 1464 aa29.35■■■□□ 2.29
CLPX-203ENST00000558958 FBLN2P98095 1184 aa29.33■■■□□ 2.29
CLPX-203ENST00000558958 TNIKQ9UKE5 1360 aa29.3■■■□□ 2.28
CLPX-203ENST00000558958 CHD1O14646 1710 aa29.24■■■□□ 2.27
CLPX-203ENST00000558958 NUP160Q12769 1436 aa29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms