RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 CARMIL1Q5VZK9 1371 aa21.41■■□□□ 1.02
SMAD3-208ENST00000558827 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
SMAD3-208ENST00000558827 CUL7Q14999 1698 aa21.37■■□□□ 1.01
SMAD3-208ENST00000558827 TTBK1Q5TCY1 1321 aaPredicted RBP21.34■■□□□ 1.01
SMAD3-208ENST00000558827 KIAA0586Q9BVV6 1533 aa21.29■■□□□ 1
SMAD3-208ENST00000558827 RAPGEF2Q9Y4G8 1499 aa21.2■□□□□ 0.98
SMAD3-208ENST00000558827 NPM1P06748 294 aaKnown RBP eCLIP21.14■□□□□ 0.97
SMAD3-208ENST00000558827 IQGAP2Q13576 1575 aa21.14■□□□□ 0.97
SMAD3-208ENST00000558827 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
SMAD3-208ENST00000558827 PTPRGP23470 1445 aa21.12■□□□□ 0.97
SMAD3-208ENST00000558827 CARMIL2Q6F5E8 1435 aa21.1■□□□□ 0.97
SMAD3-208ENST00000558827 ADCY10Q96PN6 1610 aa21.08■□□□□ 0.97
SMAD3-208ENST00000558827 TNIKQ9UKE5 1360 aa21.07■□□□□ 0.96
SMAD3-208ENST00000558827 CSRNP3Q8WYN3 585 aa21.06■□□□□ 0.96
SMAD3-208ENST00000558827 DISP1Q96F81 1524 aa21.04■□□□□ 0.96
SMAD3-208ENST00000558827 PRXQ9BXM0 1461 aa21.03■□□□□ 0.96
SMAD3-208ENST00000558827 FAM69CQ0P6D2 419 aa21.03■□□□□ 0.96
SMAD3-208ENST00000558827 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
SMAD3-208ENST00000558827 UGGT2Q9NYU1 1516 aa20.99■□□□□ 0.95
SMAD3-208ENST00000558827 RANGAP1P46060 587 aaPredicted RBP20.98■□□□□ 0.95
SMAD3-208ENST00000558827 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
SMAD3-208ENST00000558827 P3H3Q8IVL6 736 aa20.98■□□□□ 0.95
SMAD3-208ENST00000558827 KIF13AQ9H1H9 1805 aa20.98■□□□□ 0.95
SMAD3-208ENST00000558827 CTTNBP2Q8WZ74 1663 aa20.98■□□□□ 0.95
SMAD3-208ENST00000558827 KIAA0556O60303 1618 aa20.95■□□□□ 0.94
SMAD3-208ENST00000558827 UACAQ9BZF9 1416 aa20.94■□□□□ 0.94
SMAD3-208ENST00000558827 ABCC10Q5T3U5 1492 aa20.92■□□□□ 0.94
SMAD3-208ENST00000558827 MAPKBP1O60336 1514 aa20.92■□□□□ 0.94
SMAD3-208ENST00000558827 ABCC2Q92887 1545 aa20.89■□□□□ 0.94
SMAD3-208ENST00000558827 DIP2BQ9P265 1576 aa20.88■□□□□ 0.93
SMAD3-208ENST00000558827 ARID3CA6NKF2 412 aa20.87■□□□□ 0.93
SMAD3-208ENST00000558827 TSPOAP1O95153 1857 aa20.86■□□□□ 0.93
SMAD3-208ENST00000558827 EEA1Q15075 1411 aa20.86■□□□□ 0.93
SMAD3-208ENST00000558827 ASXL2Q76L83 1435 aa20.86■□□□□ 0.93
SMAD3-208ENST00000558827 UHRF1BP1LA0JNW5 1464 aa20.85■□□□□ 0.93
SMAD3-208ENST00000558827 GOLGA3Q08378 1498 aa20.85■□□□□ 0.93
SMAD3-208ENST00000558827 PLB1Q6P1J6 1458 aa20.85■□□□□ 0.93
SMAD3-208ENST00000558827 ZCCHC11Q5TAX3 1644 aaKnown RBP20.78■□□□□ 0.92
SMAD3-208ENST00000558827 KDM5BQ9UGL1 1544 aa20.78■□□□□ 0.92
SMAD3-208ENST00000558827 KCNH8Q96L42 1107 aa20.76■□□□□ 0.91
SMAD3-208ENST00000558827 UBTFP17480 764 aaKnown RBP20.75■□□□□ 0.91
SMAD3-208ENST00000558827 ABCA8O94911 1581 aa20.74■□□□□ 0.91
SMAD3-208ENST00000558827 EPRSP07814 1512 aaKnown RBP20.7■□□□□ 0.9
SMAD3-208ENST00000558827 FHOD3Q2V2M9 1422 aa20.7■□□□□ 0.9
SMAD3-208ENST00000558827 KIF21BO75037 1637 aa20.69■□□□□ 0.9
SMAD3-208ENST00000558827 SAMD9Q5K651 1589 aa20.68■□□□□ 0.9
SMAD3-208ENST00000558827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.67■□□□□ 0.9
SMAD3-208ENST00000558827 HNRNPUL2Q1KMD3 747 aaKnown RBP20.67■□□□□ 0.9
SMAD3-208ENST00000558827 KDM6BO15054 1643 aa20.65■□□□□ 0.9
SMAD3-208ENST00000558827 GLI2P10070 1586 aa20.65■□□□□ 0.9
SMAD3-208ENST00000558827 WDR7Q9Y4E6 1490 aa20.65■□□□□ 0.9
SMAD3-208ENST00000558827 AEBP2Q6ZN18 517 aaPredicted RBP20.64■□□□□ 0.89
SMAD3-208ENST00000558827 PPRC1Q5VV67 1664 aaKnown RBP20.63■□□□□ 0.89
SMAD3-208ENST00000558827 ATP10BO94823 1461 aa20.62■□□□□ 0.89
SMAD3-208ENST00000558827 RAPGEF6Q8TEU7 1601 aa20.58■□□□□ 0.89
SMAD3-208ENST00000558827 MAP3K4Q9Y6R4 1608 aa20.57■□□□□ 0.88
SMAD3-208ENST00000558827 ATP1B4Q9UN42 357 aaPredicted RBP20.57■□□□□ 0.88
SMAD3-208ENST00000558827 COL17A1Q9UMD9 1497 aaPredicted RBP20.55■□□□□ 0.88
SMAD3-208ENST00000558827 CD109Q6YHK3 1445 aa20.54■□□□□ 0.88
SMAD3-208ENST00000558827 NUP153P49790 1475 aaKnown RBP20.53■□□□□ 0.88
SMAD3-208ENST00000558827 EFCAB5A4FU69 1503 aa20.51■□□□□ 0.87
SMAD3-208ENST00000558827 TEX14Q8IWB6 1497 aa20.5■□□□□ 0.87
SMAD3-208ENST00000558827 ARHGAP35Q9NRY4 1499 aa20.47■□□□□ 0.87
SMAD3-208ENST00000558827 CFAP43Q8NDM7 1665 aa20.46■□□□□ 0.87
SMAD3-208ENST00000558827 PLEKHD1A6NEE1 506 aa20.46■□□□□ 0.87
SMAD3-208ENST00000558827 CDK13Q14004 1512 aaKnown RBP20.43■□□□□ 0.86
SMAD3-208ENST00000558827 MAGI3Q5TCQ9 1506 aa20.43■□□□□ 0.86
SMAD3-208ENST00000558827 KDM4FA0A1W2PPD8 638 aa20.41■□□□□ 0.86
SMAD3-208ENST00000558827 ABCA9Q8IUA7 1624 aa20.37■□□□□ 0.85
SMAD3-208ENST00000558827 FMN1Q68DA7 1419 aa20.36■□□□□ 0.85
SMAD3-208ENST00000558827 RAPGEF3O95398 923 aa20.34■□□□□ 0.85
SMAD3-208ENST00000558827 HECW1Q76N89 1606 aa20.3■□□□□ 0.84
SMAD3-208ENST00000558827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.28■□□□□ 0.84
SMAD3-208ENST00000558827 CLIP1P30622 1438 aa20.27■□□□□ 0.84
SMAD3-208ENST00000558827 TTC37Q6PGP7 1564 aa20.26■□□□□ 0.83
SMAD3-208ENST00000558827 ADGRL1O94910 1474 aa20.26■□□□□ 0.83
SMAD3-208ENST00000558827 LOC105371045A0A1W2PR82 267 aa20.26■□□□□ 0.83
SMAD3-208ENST00000558827 ARAP3Q8WWN8 1544 aa20.26■□□□□ 0.83
SMAD3-208ENST00000558827 CDK11AQ9UQ88 783 aaPredicted RBP20.25■□□□□ 0.83
SMAD3-208ENST00000558827 LRRIQ1Q96JM4 1722 aa20.24■□□□□ 0.83
SMAD3-208ENST00000558827 PCF11O94913 1555 aaKnown RBP20.23■□□□□ 0.83
SMAD3-208ENST00000558827 NEO1Q92859 1461 aa20.23■□□□□ 0.83
SMAD3-208ENST00000558827 AKNAQ7Z591 1439 aa20.21■□□□□ 0.83
SMAD3-208ENST00000558827 FANCAO15360 1455 aa20.21■□□□□ 0.83
SMAD3-208ENST00000558827 PHLDB1Q86UU1 1377 aa20.21■□□□□ 0.83
SMAD3-208ENST00000558827 KIF14Q15058 1648 aa20.2■□□□□ 0.82
SMAD3-208ENST00000558827 CASKIN1Q8WXD9 1431 aa20.19■□□□□ 0.82
SMAD3-208ENST00000558827 TROQ12816 1431 aaPredicted RBP20.18■□□□□ 0.82
SMAD3-208ENST00000558827 DENND4BO75064 1496 aaPredicted RBP20.16■□□□□ 0.82
SMAD3-208ENST00000558827 PLCH2O75038 1416 aa20.15■□□□□ 0.82
SMAD3-208ENST00000558827 FRMPD1Q5SYB0 1578 aa20.15■□□□□ 0.82
SMAD3-208ENST00000558827 ARID4BQ4LE39 1312 aaPredicted RBP20.14■□□□□ 0.81
SMAD3-208ENST00000558827 EFCAB2Q5VUJ9 269 aa20.13■□□□□ 0.81
SMAD3-208ENST00000558827 SCAPERQ9BY12 1400 aa20.12■□□□□ 0.81
SMAD3-208ENST00000558827 CEP162Q5TB80 1403 aa20.11■□□□□ 0.81
SMAD3-208ENST00000558827 CCDC18Q5T9S5 1454 aa20.1■□□□□ 0.81
SMAD3-208ENST00000558827 FYCO1Q9BQS8 1478 aa20.1■□□□□ 0.81
SMAD3-208ENST00000558827 MYO5CQ9NQX4 1742 aa20.1■□□□□ 0.81
SMAD3-208ENST00000558827 CFAP74Q9C0B2 1584 aa20.09■□□□□ 0.81
SMAD3-208ENST00000558827 ARHGAP5Q13017 1502 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms