RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 NISCHQ9Y2I1 1504 aa30.69■■■□□ 2.5
SMAD3-208ENST00000558827 CCDC180Q9P1Z9 1646 aa27.28■■□□□ 1.96
SMAD3-208ENST00000558827 ABCC9O60706 1549 aa27.24■■□□□ 1.95
SMAD3-208ENST00000558827 DCAF8L2P0C7V8 631 aa26.08■■□□□ 1.77
SMAD3-208ENST00000558827 RB1CC1Q8TDY2 1594 aa25.89■■□□□ 1.73
SMAD3-208ENST00000558827 NACADO15069 1562 aa25.76■■□□□ 1.71
SMAD3-208ENST00000558827 PABPN1Q86U42 306 aaKnown RBP eCLIP25.5■■□□□ 1.67
SMAD3-208ENST00000558827 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
SMAD3-208ENST00000558827 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
SMAD3-208ENST00000558827 UNC13AQ9UPW8 1703 aa25.36■■□□□ 1.65
SMAD3-208ENST00000558827 DNAJC5BQ9UF47 199 aa25.33■■□□□ 1.65
SMAD3-208ENST00000558827 DCAF1Q9Y4B6 1507 aa25.23■■□□□ 1.63
SMAD3-208ENST00000558827 BICRAQ9NZM4 1560 aa25.17■■□□□ 1.62
SMAD3-208ENST00000558827 SCRIBQ14160 1630 aa25.09■■□□□ 1.61
SMAD3-208ENST00000558827 SHROOM4Q9ULL8 1493 aa24.64■■□□□ 1.54
SMAD3-208ENST00000558827 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SMAD3-208ENST00000558827 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
SMAD3-208ENST00000558827 CECR2Q9BXF3 1484 aa24.43■■□□□ 1.5
SMAD3-208ENST00000558827 SMARCA4P51532 1647 aa23.87■■□□□ 1.41
SMAD3-208ENST00000558827 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
SMAD3-208ENST00000558827 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
SMAD3-208ENST00000558827 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
SMAD3-208ENST00000558827 SMARCA2P51531 1590 aa23.72■■□□□ 1.39
SMAD3-208ENST00000558827 MROH2BQ7Z745 1585 aa23.72■■□□□ 1.39
SMAD3-208ENST00000558827 BAZ1BQ9UIG0 1483 aaKnown RBP23.63■■□□□ 1.37
SMAD3-208ENST00000558827 HMGXB3Q12766 1538 aa23.61■■□□□ 1.37
SMAD3-208ENST00000558827 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
SMAD3-208ENST00000558827 NESP48681 1621 aa23.49■■□□□ 1.35
SMAD3-208ENST00000558827 WIZO95785 1651 aa23.47■■□□□ 1.35
SMAD3-208ENST00000558827 ERCC6Q03468 1493 aa23.44■■□□□ 1.34
SMAD3-208ENST00000558827 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
SMAD3-208ENST00000558827 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
SMAD3-208ENST00000558827 CUX2O14529 1486 aa23.16■■□□□ 1.3
SMAD3-208ENST00000558827 CADPSQ9ULU8 1353 aa23.15■■□□□ 1.3
SMAD3-208ENST00000558827 KIF21AQ7Z4S6 1674 aa23.12■■□□□ 1.29
SMAD3-208ENST00000558827 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
SMAD3-208ENST00000558827 TOP2AP11388 1531 aaKnown RBP23.1■■□□□ 1.29
SMAD3-208ENST00000558827 THOC2Q8NI27 1593 aaKnown RBP23.05■■□□□ 1.28
SMAD3-208ENST00000558827 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
SMAD3-208ENST00000558827 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
SMAD3-208ENST00000558827 CFTRP13569 1480 aa22.92■■□□□ 1.26
SMAD3-208ENST00000558827 FANCD2Q9BXW9 1451 aa22.91■■□□□ 1.26
SMAD3-208ENST00000558827 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
SMAD3-208ENST00000558827 CEP164Q9UPV0 1460 aa22.88■■□□□ 1.25
SMAD3-208ENST00000558827 WDR62O43379 1518 aa22.78■■□□□ 1.24
SMAD3-208ENST00000558827 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
SMAD3-208ENST00000558827 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
SMAD3-208ENST00000558827 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
SMAD3-208ENST00000558827 TOPBP1Q92547 1522 aa22.51■■□□□ 1.19
SMAD3-208ENST00000558827 ZNF608Q9ULD9 1512 aaPredicted RBP22.42■■□□□ 1.18
SMAD3-208ENST00000558827 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
SMAD3-208ENST00000558827 IFT140Q96RY7 1462 aa22.39■■□□□ 1.17
SMAD3-208ENST00000558827 ABCC8Q09428 1581 aa22.38■■□□□ 1.17
SMAD3-208ENST00000558827 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
SMAD3-208ENST00000558827 OSCARQ8IYS5 282 aa22.3■■□□□ 1.16
SMAD3-208ENST00000558827 POLA1P09884 1462 aaPredicted RBP22.29■■□□□ 1.16
SMAD3-208ENST00000558827 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.169e-9■■■□□ 16.6
SMAD3-208ENST00000558827 CUX1P39880 1505 aa22.26■■□□□ 1.15
SMAD3-208ENST00000558827 TARBP1Q13395 1621 aaKnown RBP22.24■■□□□ 1.15
SMAD3-208ENST00000558827 SOGA1O94964 1423 aa22.24■■□□□ 1.15
SMAD3-208ENST00000558827 EIF4G3O43432 1585 aaKnown RBP22.23■■□□□ 1.15
SMAD3-208ENST00000558827 TDRD9Q8NDG6 1382 aaKnown RBP22.23■■□□□ 1.15
SMAD3-208ENST00000558827 FGD5Q6ZNL6 1462 aa22.22■■□□□ 1.15
SMAD3-208ENST00000558827 TRIM41Q8WV44 630 aa22.22■■□□□ 1.15
SMAD3-208ENST00000558827 FBLN2P98095 1184 aa22.18■■□□□ 1.14
SMAD3-208ENST00000558827 CHD1O14646 1710 aa22.05■■□□□ 1.12
SMAD3-208ENST00000558827 SNAPC4Q5SXM2 1469 aa22.02■■□□□ 1.12
SMAD3-208ENST00000558827 WRNQ14191 1432 aaPredicted RBP eCLIP22■■□□□ 1.11
SMAD3-208ENST00000558827 SYNJ1O43426 1573 aa21.97■■□□□ 1.11
SMAD3-208ENST00000558827 CHMP7Q8WUX9 453 aaPredicted RBP21.97■■□□□ 1.11
SMAD3-208ENST00000558827 WDR97A6NE52 1622 aa21.95■■□□□ 1.1
SMAD3-208ENST00000558827 GRIN2BQ13224 1484 aa21.95■■□□□ 1.1
SMAD3-208ENST00000558827 GAPVD1Q14C86 1478 aa21.95■■□□□ 1.1
SMAD3-208ENST00000558827 RIMBP3CA6NJZ7 1639 aa21.94■■□□□ 1.1
SMAD3-208ENST00000558827 RIMBP3BA6NNM3 1639 aa21.94■■□□□ 1.1
SMAD3-208ENST00000558827 RIMBP3Q9UFD9 1639 aa21.94■■□□□ 1.1
SMAD3-208ENST00000558827 ABCA10Q8WWZ4 1543 aa21.92■■□□□ 1.1
SMAD3-208ENST00000558827 TOP2BQ02880 1626 aa21.91■■□□□ 1.1
SMAD3-208ENST00000558827 BIVM-ERCC5R4GMW8 1640 aa21.9■■□□□ 1.1
SMAD3-208ENST00000558827 PBRM1Q86U86 1689 aa21.88■■□□□ 1.09
SMAD3-208ENST00000558827 ARHGEF11O15085 1522 aa21.88■■□□□ 1.09
SMAD3-208ENST00000558827 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
SMAD3-208ENST00000558827 CYB5RLQ6IPT4 315 aa21.85■■□□□ 1.09
SMAD3-208ENST00000558827 ABCA5Q8WWZ7 1642 aa21.84■■□□□ 1.09
SMAD3-208ENST00000558827 SYNJ2O15056 1496 aa21.83■■□□□ 1.08
SMAD3-208ENST00000558827 CLASP1Q7Z460 1538 aa21.73■■□□□ 1.07
SMAD3-208ENST00000558827 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
SMAD3-208ENST00000558827 ADAMTS12P58397 1594 aa21.69■■□□□ 1.06
SMAD3-208ENST00000558827 GRIN2AQ12879 1464 aa21.67■■□□□ 1.06
SMAD3-208ENST00000558827 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
SMAD3-208ENST00000558827 ERICH3Q5RHP9 1530 aa21.62■■□□□ 1.05
SMAD3-208ENST00000558827 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
SMAD3-208ENST00000558827 NUP160Q12769 1436 aa21.55■■□□□ 1.04
SMAD3-208ENST00000558827 ERCC6L2Q5T890 1561 aa21.55■■□□□ 1.04
SMAD3-208ENST00000558827 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
SMAD3-208ENST00000558827 IGF1RP08069 1367 aa21.54■■□□□ 1.04
SMAD3-208ENST00000558827 TRHP20396 242 aaPredicted RBP21.54■■□□□ 1.04
SMAD3-208ENST00000558827 JPH4Q96JJ6 628 aa21.46■■□□□ 1.03
SMAD3-208ENST00000558827 PRG4Q92954 1404 aaPredicted RBP21.42■■□□□ 1.02
SMAD3-208ENST00000558827 RUSC2Q8N2Y8 1516 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 167 ms