RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 CEP162Q5TB80 1403 aa27.05■■□□□ 1.92
SNX1-203ENST00000558040 NUP160Q12769 1436 aa27.04■■□□□ 1.92
SNX1-203ENST00000558040 CEP170Q5SW79 1584 aa27.01■■□□□ 1.92
SNX1-203ENST00000558040 KIAA0586Q9BVV6 1533 aa27■■□□□ 1.91
SNX1-203ENST00000558040 IQGAP2Q13576 1575 aa26.98■■□□□ 1.91
SNX1-203ENST00000558040 CLIP1P30622 1438 aa26.97■■□□□ 1.91
SNX1-203ENST00000558040 RANGAP1P46060 587 aaPredicted RBP26.91■■□□□ 1.9
SNX1-203ENST00000558040 EFCAB5A4FU69 1503 aa26.88■■□□□ 1.89
SNX1-203ENST00000558040 UGGT2Q9NYU1 1516 aa26.85■■□□□ 1.89
SNX1-203ENST00000558040 ARHGAP35Q9NRY4 1499 aa26.83■■□□□ 1.89
SNX1-203ENST00000558040 CLASP1Q7Z460 1538 aa26.8■■□□□ 1.88
SNX1-203ENST00000558040 SAMD9Q5K651 1589 aa26.8■■□□□ 1.88
SNX1-203ENST00000558040 OSCARQ8IYS5 282 aa26.78■■□□□ 1.88
SNX1-203ENST00000558040 JPH4Q96JJ6 628 aa26.77■■□□□ 1.88
SNX1-203ENST00000558040 ARAP1Q96P48 1450 aa26.74■■□□□ 1.87
SNX1-203ENST00000558040 SHROOM2Q13796 1616 aa26.73■■□□□ 1.87
SNX1-203ENST00000558040 CARMIL2Q6F5E8 1435 aa26.72■■□□□ 1.87
SNX1-203ENST00000558040 KIAA0556O60303 1618 aa26.71■■□□□ 1.87
SNX1-203ENST00000558040 DISP1Q96F81 1524 aa26.7■■□□□ 1.86
SNX1-203ENST00000558040 FHOD3Q2V2M9 1422 aa26.68■■□□□ 1.86
SNX1-203ENST00000558040 P3H3Q8IVL6 736 aa26.68■■□□□ 1.86
SNX1-203ENST00000558040 VPS8Q8N3P4 1428 aa26.67■■□□□ 1.86
SNX1-203ENST00000558040 PRG4Q92954 1404 aaPredicted RBP26.66■■□□□ 1.86
SNX1-203ENST00000558040 FMN1Q68DA7 1419 aa26.62■■□□□ 1.85
SNX1-203ENST00000558040 PCF11O94913 1555 aaKnown RBP26.48■■□□□ 1.83
SNX1-203ENST00000558040 ERCC6L2Q5T890 1561 aa26.48■■□□□ 1.83
SNX1-203ENST00000558040 FYCO1Q9BQS8 1478 aa26.48■■□□□ 1.83
SNX1-203ENST00000558040 CASKIN1Q8WXD9 1431 aa26.48■■□□□ 1.83
SNX1-203ENST00000558040 PTPRGP23470 1445 aa26.46■■□□□ 1.83
SNX1-203ENST00000558040 TTBK1Q5TCY1 1321 aaPredicted RBP26.43■■□□□ 1.82
SNX1-203ENST00000558040 APLP2Q06481 763 aa26.43■■□□□ 1.82
SNX1-203ENST00000558040 HECW1Q76N89 1606 aa26.4■■□□□ 1.82
SNX1-203ENST00000558040 RAPGEF6Q8TEU7 1601 aa26.39■■□□□ 1.81
SNX1-203ENST00000558040 ATP1B4Q9UN42 357 aaPredicted RBP26.37■■□□□ 1.81
SNX1-203ENST00000558040 PLB1Q6P1J6 1458 aa26.35■■□□□ 1.81
SNX1-203ENST00000558040 ABCA8O94911 1581 aa26.34■■□□□ 1.81
SNX1-203ENST00000558040 ARHGEF11O15085 1522 aa26.33■■□□□ 1.81
SNX1-203ENST00000558040 MAP3K1Q13233 1512 aa26.33■■□□□ 1.81
SNX1-203ENST00000558040 CCDC18Q5T9S5 1454 aa26.31■■□□□ 1.8
SNX1-203ENST00000558040 UACAQ9BZF9 1416 aa26.31■■□□□ 1.8
SNX1-203ENST00000558040 TIAM1Q13009 1591 aa26.29■■□□□ 1.8
SNX1-203ENST00000558040 CFAP43Q8NDM7 1665 aa26.28■■□□□ 1.8
SNX1-203ENST00000558040 NUP153P49790 1475 aaKnown RBP26.28■■□□□ 1.8
SNX1-203ENST00000558040 EPRSP07814 1512 aaKnown RBP26.26■■□□□ 1.79
SNX1-203ENST00000558040 ABCC2Q92887 1545 aa26.24■■□□□ 1.79
SNX1-203ENST00000558040 UHRF1BP1LA0JNW5 1464 aa26.23■■□□□ 1.79
SNX1-203ENST00000558040 LRRIQ1Q96JM4 1722 aa26.23■■□□□ 1.79
SNX1-203ENST00000558040 RIMBP3CA6NJZ7 1639 aa26.23■■□□□ 1.79
SNX1-203ENST00000558040 RIMBP3BA6NNM3 1639 aa26.23■■□□□ 1.79
SNX1-203ENST00000558040 RIMBP3Q9UFD9 1639 aa26.23■■□□□ 1.79
SNX1-203ENST00000558040 CDK13Q14004 1512 aaKnown RBP26.19■■□□□ 1.78
SNX1-203ENST00000558040 LRRC9Q6ZRR7 1453 aa26.16■■□□□ 1.78
SNX1-203ENST00000558040 ARID3CA6NKF2 412 aa26.15■■□□□ 1.78
SNX1-203ENST00000558040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.14■■□□□ 1.78
SNX1-203ENST00000558040 HNRNPUL2Q1KMD3 747 aaKnown RBP26.14■■□□□ 1.78
SNX1-203ENST00000558040 PPARGC1BQ86YN6 1023 aaKnown RBP26.14■■□□□ 1.78
SNX1-203ENST00000558040 CDK11AQ9UQ88 783 aaPredicted RBP26.14■■□□□ 1.78
SNX1-203ENST00000558040 ATP10BO94823 1461 aa26.13■■□□□ 1.77
SNX1-203ENST00000558040 KANK4Q5T7N3 995 aaPredicted RBP26.13■■□□□ 1.77
SNX1-203ENST00000558040 ADCY10Q96PN6 1610 aa26.12■■□□□ 1.77
SNX1-203ENST00000558040 MTUS2Q5JR59 1369 aa26.11■■□□□ 1.77
SNX1-203ENST00000558040 EHBP1L1Q8N3D4 1523 aa26.1■■□□□ 1.77
SNX1-203ENST00000558040 KDM5BQ9UGL1 1544 aa26.09■■□□□ 1.77
SNX1-203ENST00000558040 ZCCHC11Q5TAX3 1644 aaKnown RBP26.05■■□□□ 1.76
SNX1-203ENST00000558040 CYB5RLQ6IPT4 315 aa26.04■■□□□ 1.76
SNX1-203ENST00000558040 MAGI3Q5TCQ9 1506 aa26.04■■□□□ 1.76
SNX1-203ENST00000558040 PLEKHD1A6NEE1 506 aa26.02■■□□□ 1.76
SNX1-203ENST00000558040 TROQ12816 1431 aaPredicted RBP26.01■■□□□ 1.75
SNX1-203ENST00000558040 NPM1P06748 294 aaKnown RBP eCLIP26■■□□□ 1.75
SNX1-203ENST00000558040 SUPT6HQ7KZ85 1726 aaKnown RBP26■■□□□ 1.75
SNX1-203ENST00000558040 NCOA2Q15596 1464 aa25.92■■□□□ 1.74
SNX1-203ENST00000558040 KIF14Q15058 1648 aa25.92■■□□□ 1.74
SNX1-203ENST00000558040 WDR7Q9Y4E6 1490 aa25.88■■□□□ 1.73
SNX1-203ENST00000558040 DNAJC5Q9H3Z4 198 aa25.88■■□□□ 1.73
SNX1-203ENST00000558040 TRIM26Q12899 539 aaPredicted RBP25.87■■□□□ 1.73
SNX1-203ENST00000558040 ASXL2Q76L83 1435 aa25.86■■□□□ 1.73
SNX1-203ENST00000558040 PHLDB1Q86UU1 1377 aa25.85■■□□□ 1.73
SNX1-203ENST00000558040 MAPKBP1O60336 1514 aa25.82■■□□□ 1.72
SNX1-203ENST00000558040 MYOM3Q5VTT5 1437 aa25.81■■□□□ 1.72
SNX1-203ENST00000558040 CCNB3Q8WWL7 1395 aa25.81■■□□□ 1.72
SNX1-203ENST00000558040 ABCC10Q5T3U5 1492 aa25.79■■□□□ 1.72
SNX1-203ENST00000558040 RRBP1Q9P2E9 1410 aaKnown RBP25.78■■□□□ 1.72
SNX1-203ENST00000558040 KCNH8Q96L42 1107 aa25.77■■□□□ 1.72
SNX1-203ENST00000558040 ITSN2Q9NZM3 1697 aa25.77■■□□□ 1.72
SNX1-203ENST00000558040 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.74■■□□□ 1.71
SNX1-203ENST00000558040 FGD6Q6ZV73 1430 aa25.74■■□□□ 1.71
SNX1-203ENST00000558040 MIA2Q96PC5 1412 aa25.73■■□□□ 1.71
SNX1-203ENST00000558040 GPATCH8Q9UKJ3 1502 aaKnown RBP25.72■■□□□ 1.71
SNX1-203ENST00000558040 TTC37Q6PGP7 1564 aa25.71■■□□□ 1.71
SNX1-203ENST00000558040 ABCA9Q8IUA7 1624 aa25.68■■□□□ 1.7
SNX1-203ENST00000558040 CDC42BPAQ5VT25 1732 aa25.68■■□□□ 1.7
SNX1-203ENST00000558040 MYO5CQ9NQX4 1742 aa25.67■■□□□ 1.7
SNX1-203ENST00000558040 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.67■■□□□ 1.7
SNX1-203ENST00000558040 PREX2Q70Z35 1606 aa25.66■■□□□ 1.7
SNX1-203ENST00000558040 CFDP1Q9UEE9 299 aaPredicted RBP25.66■■□□□ 1.7
SNX1-203ENST00000558040 PTPN23Q9H3S7 1636 aa25.66■■□□□ 1.7
SNX1-203ENST00000558040 PCGF6Q9BYE7 350 aa25.65■■□□□ 1.7
SNX1-203ENST00000558040 TCOF1Q13428 1488 aaKnown RBP25.64■■□□□ 1.69
SNX1-203ENST00000558040 FAM50AQ14320 339 aaKnown RBP25.63■■□□□ 1.69
SNX1-203ENST00000558040 ARAP3Q8WWN8 1544 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms