RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MAPKBP1O60336 1514 aa22.62■■□□□ 1.21
SHMT2-230ENST00000557427 KDM6BO15054 1643 aa22.62■■□□□ 1.21
SHMT2-230ENST00000557427 WRNQ14191 1432 aaPredicted RBP eCLIP22.59■■□□□ 1.21
SHMT2-230ENST00000557427 NPM1P06748 294 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT2-230ENST00000557427 ADCY10Q96PN6 1610 aa22.54■■□□□ 1.2
SHMT2-230ENST00000557427 ERICH3Q5RHP9 1530 aa22.52■■□□□ 1.2
SHMT2-230ENST00000557427 TSPOAP1O95153 1857 aa22.51■■□□□ 1.19
SHMT2-230ENST00000557427 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
SHMT2-230ENST00000557427 TOP2BQ02880 1626 aa22.43■■□□□ 1.18
SHMT2-230ENST00000557427 BIVM-ERCC5R4GMW8 1640 aa22.43■■□□□ 1.18
SHMT2-230ENST00000557427 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
SHMT2-230ENST00000557427 HECW2Q9P2P5 1572 aa22.36■■□□□ 1.17
SHMT2-230ENST00000557427 PPRC1Q5VV67 1664 aaKnown RBP22.33■■□□□ 1.16
SHMT2-230ENST00000557427 COL17A1Q9UMD9 1497 aaPredicted RBP22.3■■□□□ 1.16
SHMT2-230ENST00000557427 KIAA0586Q9BVV6 1533 aa22.27■■□□□ 1.16
SHMT2-230ENST00000557427 SUPT5HO00267 1087 aaKnown RBP22.26■■□□□ 1.15
SHMT2-230ENST00000557427 GLI2P10070 1586 aa22.23■■□□□ 1.15
SHMT2-230ENST00000557427 ASXL2Q76L83 1435 aa22.23■■□□□ 1.15
SHMT2-230ENST00000557427 PTPRGP23470 1445 aa22.22■■□□□ 1.15
SHMT2-230ENST00000557427 ABCC2Q92887 1545 aa22.21■■□□□ 1.15
SHMT2-230ENST00000557427 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
SHMT2-230ENST00000557427 PLB1Q6P1J6 1458 aa22.17■■□□□ 1.14
SHMT2-230ENST00000557427 IGF1RP08069 1367 aa22.14■■□□□ 1.14
SHMT2-230ENST00000557427 FBXO41Q8TF61 875 aa22.13■■□□□ 1.13
SHMT2-230ENST00000557427 TNIKQ9UKE5 1360 aa22.11■■□□□ 1.13
SHMT2-230ENST00000557427 CUL7Q14999 1698 aa22.1■■□□□ 1.13
SHMT2-230ENST00000557427 EPRSP07814 1512 aaKnown RBP22.09■■□□□ 1.13
SHMT2-230ENST00000557427 MAP3K4Q9Y6R4 1608 aa22.09■■□□□ 1.13
SHMT2-230ENST00000557427 UHRF1BP1LA0JNW5 1464 aa22.07■■□□□ 1.12
SHMT2-230ENST00000557427 UACAQ9BZF9 1416 aa22.03■■□□□ 1.12
SHMT2-230ENST00000557427 CARMIL2Q6F5E8 1435 aa22.02■■□□□ 1.12
SHMT2-230ENST00000557427 TEX14Q8IWB6 1497 aa22.02■■□□□ 1.12
SHMT2-230ENST00000557427 KDM5BQ9UGL1 1544 aa22■■□□□ 1.11
SHMT2-230ENST00000557427 KIF27Q86VH2 1401 aa21.96■■□□□ 1.11
SHMT2-230ENST00000557427 DISP1Q96F81 1524 aa21.95■■□□□ 1.1
SHMT2-230ENST00000557427 ZCCHC11Q5TAX3 1644 aaKnown RBP21.93■■□□□ 1.1
SHMT2-230ENST00000557427 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
SHMT2-230ENST00000557427 IQGAP2Q13576 1575 aa21.91■■□□□ 1.1
SHMT2-230ENST00000557427 WDR7Q9Y4E6 1490 aa21.85■■□□□ 1.09
SHMT2-230ENST00000557427 KIF21BO75037 1637 aa21.84■■□□□ 1.09
SHMT2-230ENST00000557427 MAGI3Q5TCQ9 1506 aa21.83■■□□□ 1.09
SHMT2-230ENST00000557427 CD109Q6YHK3 1445 aa21.81■■□□□ 1.08
SHMT2-230ENST00000557427 UGGT2Q9NYU1 1516 aa21.78■■□□□ 1.08
SHMT2-230ENST00000557427 PTPRMP28827 1452 aa21.77■■□□□ 1.08
SHMT2-230ENST00000557427 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
SHMT2-230ENST00000557427 KIAA0556O60303 1618 aa21.75■■□□□ 1.07
SHMT2-230ENST00000557427 LMTK3Q96Q04 1460 aa21.75■■□□□ 1.07
SHMT2-230ENST00000557427 CFAP43Q8NDM7 1665 aa21.75■■□□□ 1.07
SHMT2-230ENST00000557427 ADAMTSL3P82987 1691 aa21.73■■□□□ 1.07
SHMT2-230ENST00000557427 ARAP3Q8WWN8 1544 aa21.69■■□□□ 1.06
SHMT2-230ENST00000557427 PCF11O94913 1555 aaKnown RBP21.66■■□□□ 1.06
SHMT2-230ENST00000557427 ILDR2Q71H61 639 aa21.64■■□□□ 1.05
SHMT2-230ENST00000557427 ABCA8O94911 1581 aa21.63■■□□□ 1.05
SHMT2-230ENST00000557427 RAPGEF2Q9Y4G8 1499 aa21.61■■□□□ 1.05
SHMT2-230ENST00000557427 RAPGEF3O95398 923 aa21.59■■□□□ 1.05
SHMT2-230ENST00000557427 MADDQ8WXG6 1647 aa21.58■■□□□ 1.05
SHMT2-230ENST00000557427 BCORL1Q5H9F3 1711 aa21.58■■□□□ 1.05
SHMT2-230ENST00000557427 HSPA2P54652 639 aa21.57■■□□□ 1.04
SHMT2-230ENST00000557427 SOCS7O14512 581 aa21.56■■□□□ 1.04
SHMT2-230ENST00000557427 CERKQ8TCT0 537 aa21.55■■□□□ 1.04
SHMT2-230ENST00000557427 ARID4BQ4LE39 1312 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-230ENST00000557427 PHLDB1Q86UU1 1377 aa21.5■■□□□ 1.03
SHMT2-230ENST00000557427 DISP3Q9P2K9 1392 aa21.49■■□□□ 1.03
SHMT2-230ENST00000557427 FRMPD1Q5SYB0 1578 aa21.49■■□□□ 1.03
SHMT2-230ENST00000557427 ARID3CA6NKF2 412 aa21.49■■□□□ 1.03
SHMT2-230ENST00000557427 ATP10BO94823 1461 aa21.47■■□□□ 1.03
SHMT2-230ENST00000557427 GOLGA3Q08378 1498 aa21.47■■□□□ 1.03
SHMT2-230ENST00000557427 ABCA9Q8IUA7 1624 aa21.47■■□□□ 1.03
SHMT2-230ENST00000557427 RIMS1Q86UR5 1692 aaKnown RBP21.47■■□□□ 1.03
SHMT2-230ENST00000557427 CTTNBP2Q8WZ74 1663 aa21.44■■□□□ 1.02
SHMT2-230ENST00000557427 NEO1Q92859 1461 aa21.43■■□□□ 1.02
SHMT2-230ENST00000557427 PLPPR3Q6T4P5 718 aa21.41■■□□□ 1.02
SHMT2-230ENST00000557427 ARHGEF40Q8TER5 1519 aa21.36■■□□□ 1.01
SHMT2-230ENST00000557427 SIGLEC1Q9BZZ2 1709 aa21.35■■□□□ 1.01
SHMT2-230ENST00000557427 P3H3Q8IVL6 736 aa21.33■■□□□ 1.01
SHMT2-230ENST00000557427 RICTORQ6R327 1708 aa21.3■■□□□ 1
SHMT2-230ENST00000557427 DENND4BO75064 1496 aaPredicted RBP21.28■■□□□ 1
SHMT2-230ENST00000557427 FHOD3Q2V2M9 1422 aa21.28■■□□□ 1
SHMT2-230ENST00000557427 YEATS2Q9ULM3 1422 aa21.26■□□□□ 0.99
SHMT2-230ENST00000557427 SPATA31D1Q6ZQQ2 1576 aa21.25■□□□□ 0.99
SHMT2-230ENST00000557427 POGZQ7Z3K3 1410 aa21.25■□□□□ 0.99
SHMT2-230ENST00000557427 FANCAO15360 1455 aa21.25■□□□□ 0.99
SHMT2-230ENST00000557427 AKNAQ7Z591 1439 aa21.24■□□□□ 0.99
SHMT2-230ENST00000557427 MLECQ14165 292 aa21.24■□□□□ 0.99
SHMT2-230ENST00000557427 PRXQ9BXM0 1461 aa21.24■□□□□ 0.99
SHMT2-230ENST00000557427 TTC37Q6PGP7 1564 aa21.22■□□□□ 0.99
SHMT2-230ENST00000557427 STRCQ7RTU9 1775 aa21.21■□□□□ 0.99
SHMT2-230ENST00000557427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.21■□□□□ 0.99
SHMT2-230ENST00000557427 HNRNPUL2Q1KMD3 747 aaKnown RBP21.21■□□□□ 0.99
SHMT2-230ENST00000557427 ZMYM4Q5VZL5 1548 aa21.2■□□□□ 0.98
SHMT2-230ENST00000557427 RAPGEF6Q8TEU7 1601 aa21.2■□□□□ 0.98
SHMT2-230ENST00000557427 FER1L4A9Z1Z3 1794 aa21.19■□□□□ 0.98
SHMT2-230ENST00000557427 FAM9AQ8IZU1 332 aaPredicted RBP21.19■□□□□ 0.98
SHMT2-230ENST00000557427 ZFYVE16Q7Z3T8 1539 aa21.19■□□□□ 0.98
SHMT2-230ENST00000557427 CEBPAP49715 358 aaPredicted RBP21.18■□□□□ 0.98
SHMT2-230ENST00000557427 NUP153P49790 1475 aaKnown RBP21.18■□□□□ 0.98
SHMT2-230ENST00000557427 PREX1Q8TCU6 1659 aa21.15■□□□□ 0.98
SHMT2-230ENST00000557427 EFCAB5A4FU69 1503 aa21.15■□□□□ 0.98
SHMT2-230ENST00000557427 DMRT2Q9Y5R5 561 aa21.14■□□□□ 0.97
SHMT2-230ENST00000557427 SAMD9Q5K651 1589 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 262.5 ms