RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 NISCHQ9Y2I1 1504 aa31.77■■■□□ 2.68
SHMT2-230ENST00000557427 ABCC9O60706 1549 aa29.61■■■□□ 2.33
SHMT2-230ENST00000557427 CCDC180Q9P1Z9 1646 aa28.76■■■□□ 2.19
SHMT2-230ENST00000557427 DNAJC5BQ9UF47 199 aa28.6■■■□□ 2.17
SHMT2-230ENST00000557427 RB1CC1Q8TDY2 1594 aa27.76■■■□□ 2.03
SHMT2-230ENST00000557427 PABPN1Q86U42 306 aaKnown RBP eCLIP27.49■■□□□ 1.99
SHMT2-230ENST00000557427 NACADO15069 1562 aa27.39■■□□□ 1.98
SHMT2-230ENST00000557427 UNC13AQ9UPW8 1703 aa27.19■■□□□ 1.94
SHMT2-230ENST00000557427 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
SHMT2-230ENST00000557427 BICRAQ9NZM4 1560 aa27.09■■□□□ 1.93
SHMT2-230ENST00000557427 MYO15BQ96JP2 1530 aa26.77■■□□□ 1.88
SHMT2-230ENST00000557427 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
SHMT2-230ENST00000557427 DNAJC5Q9H3Z4 198 aa26.72■■□□□ 1.87
SHMT2-230ENST00000557427 CC2D2AQ9P2K1 1620 aa26.69■■□□□ 1.86
SHMT2-230ENST00000557427 SHROOM4Q9ULL8 1493 aa26.51■■□□□ 1.83
SHMT2-230ENST00000557427 EIF4G1Q04637 1599 aaKnown RBP26.44■■□□□ 1.82
SHMT2-230ENST00000557427 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
SHMT2-230ENST00000557427 DCAF1Q9Y4B6 1507 aa26.16■■□□□ 1.78
SHMT2-230ENST00000557427 ZCCHC6Q5VYS8 1495 aaKnown RBP26.16■■□□□ 1.78
SHMT2-230ENST00000557427 CUX2O14529 1486 aa25.77■■□□□ 1.72
SHMT2-230ENST00000557427 ERCC6Q03468 1493 aa25.54■■□□□ 1.68
SHMT2-230ENST00000557427 NCAPD3P42695 1498 aa25.36■■□□□ 1.65
SHMT2-230ENST00000557427 NESP48681 1621 aa25.26■■□□□ 1.63
SHMT2-230ENST00000557427 TRIM41Q8WV44 630 aa25.2■■□□□ 1.62
SHMT2-230ENST00000557427 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
SHMT2-230ENST00000557427 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
SHMT2-230ENST00000557427 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
SHMT2-230ENST00000557427 SMARCA2P51531 1590 aa24.99■■□□□ 1.59
SHMT2-230ENST00000557427 SMARCA4P51532 1647 aa24.93■■□□□ 1.58
SHMT2-230ENST00000557427 LAMC3Q9Y6N6 1575 aa24.84■■□□□ 1.57
SHMT2-230ENST00000557427 BAZ1BQ9UIG0 1483 aaKnown RBP24.84■■□□□ 1.57
SHMT2-230ENST00000557427 KIF21AQ7Z4S6 1674 aa24.83■■□□□ 1.57
SHMT2-230ENST00000557427 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
SHMT2-230ENST00000557427 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
SHMT2-230ENST00000557427 BAZ1AQ9NRL2 1556 aaPredicted RBP24.67■■□□□ 1.54
SHMT2-230ENST00000557427 MRC2Q9UBG0 1479 aa24.58■■□□□ 1.53
SHMT2-230ENST00000557427 WDR62O43379 1518 aa24.56■■□□□ 1.52
SHMT2-230ENST00000557427 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
SHMT2-230ENST00000557427 MROH2BQ7Z745 1585 aa24.51■■□□□ 1.51
SHMT2-230ENST00000557427 OSCARQ8IYS5 282 aa24.5■■□□□ 1.51
SHMT2-230ENST00000557427 CEP164Q9UPV0 1460 aa24.32■■□□□ 1.48
SHMT2-230ENST00000557427 RIMBP3CA6NJZ7 1639 aa24.28■■□□□ 1.48
SHMT2-230ENST00000557427 RIMBP3BA6NNM3 1639 aa24.28■■□□□ 1.48
SHMT2-230ENST00000557427 RIMBP3Q9UFD9 1639 aa24.28■■□□□ 1.48
SHMT2-230ENST00000557427 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
SHMT2-230ENST00000557427 WIZO95785 1651 aa24.16■■□□□ 1.46
SHMT2-230ENST00000557427 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
SHMT2-230ENST00000557427 ARHGEF11O15085 1522 aa24.12■■□□□ 1.45
SHMT2-230ENST00000557427 CFTRP13569 1480 aa24.11■■□□□ 1.45
SHMT2-230ENST00000557427 CYB5RLQ6IPT4 315 aa24.02■■□□□ 1.44
SHMT2-230ENST00000557427 ZNF608Q9ULD9 1512 aaPredicted RBP24■■□□□ 1.43
SHMT2-230ENST00000557427 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
SHMT2-230ENST00000557427 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
SHMT2-230ENST00000557427 ARAP1Q96P48 1450 aa23.86■■□□□ 1.41
SHMT2-230ENST00000557427 AEBP2Q6ZN18 517 aaPredicted RBP23.77■■□□□ 1.4
SHMT2-230ENST00000557427 TOP2AP11388 1531 aaKnown RBP23.75■■□□□ 1.39
SHMT2-230ENST00000557427 EIF4G3O43432 1585 aaKnown RBP23.74■■□□□ 1.39
SHMT2-230ENST00000557427 RSF1Q96T23 1441 aaPredicted RBP23.73■■□□□ 1.39
SHMT2-230ENST00000557427 TOPBP1Q92547 1522 aa23.73■■□□□ 1.39
SHMT2-230ENST00000557427 CHD1O14646 1710 aa23.71■■□□□ 1.39
SHMT2-230ENST00000557427 PRDM2Q13029 1718 aa23.7■■□□□ 1.39
SHMT2-230ENST00000557427 AQRO60306 1485 aaKnown RBP eCLIP23.67■■□□□ 1.385e-7■■■■□ 22.2
SHMT2-230ENST00000557427 FBLN2P98095 1184 aa23.62■■□□□ 1.37
SHMT2-230ENST00000557427 TARBP1Q13395 1621 aaKnown RBP23.58■■□□□ 1.36
SHMT2-230ENST00000557427 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
SHMT2-230ENST00000557427 ABCC8Q09428 1581 aa23.54■■□□□ 1.36
SHMT2-230ENST00000557427 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
SHMT2-230ENST00000557427 CLASP1Q7Z460 1538 aa23.45■■□□□ 1.34
SHMT2-230ENST00000557427 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
SHMT2-230ENST00000557427 RAD54L2Q9Y4B4 1467 aa23.41■■□□□ 1.34
SHMT2-230ENST00000557427 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
SHMT2-230ENST00000557427 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
SHMT2-230ENST00000557427 CHMP7Q8WUX9 453 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-230ENST00000557427 SOGA1O94964 1423 aa23.31■■□□□ 1.32
SHMT2-230ENST00000557427 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
SHMT2-230ENST00000557427 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
SHMT2-230ENST00000557427 MAGI1Q96QZ7 1491 aaPredicted RBP23.23■■□□□ 1.31
SHMT2-230ENST00000557427 SYNJ2O15056 1496 aa23.18■■□□□ 1.3
SHMT2-230ENST00000557427 WDR97A6NE52 1622 aa23.18■■□□□ 1.3
SHMT2-230ENST00000557427 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
SHMT2-230ENST00000557427 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
SHMT2-230ENST00000557427 ERCC6L2Q5T890 1561 aa23.1■■□□□ 1.29
SHMT2-230ENST00000557427 CUX1P39880 1505 aa23.06■■□□□ 1.28
SHMT2-230ENST00000557427 PBRM1Q86U86 1689 aa23■■□□□ 1.27
SHMT2-230ENST00000557427 KIF13AQ9H1H9 1805 aa22.96■■□□□ 1.27
SHMT2-230ENST00000557427 ILDR1Q86SU0 546 aaPredicted RBP22.94■■□□□ 1.26
SHMT2-230ENST00000557427 CEP170Q5SW79 1584 aa22.92■■□□□ 1.26
SHMT2-230ENST00000557427 ABCA5Q8WWZ7 1642 aa22.89■■□□□ 1.25
SHMT2-230ENST00000557427 GRIN2AQ12879 1464 aa22.88■■□□□ 1.25
SHMT2-230ENST00000557427 KDM4FA0A1W2PPD8 638 aa22.87■■□□□ 1.25
SHMT2-230ENST00000557427 NUP160Q12769 1436 aa22.86■■□□□ 1.25
SHMT2-230ENST00000557427 ABCA10Q8WWZ4 1543 aa22.86■■□□□ 1.25
SHMT2-230ENST00000557427 SHROOM2Q13796 1616 aa22.83■■□□□ 1.25
SHMT2-230ENST00000557427 FAM69CQ0P6D2 419 aa22.76■■□□□ 1.23
SHMT2-230ENST00000557427 ADAMTS12P58397 1594 aa22.76■■□□□ 1.23
SHMT2-230ENST00000557427 ABCC10Q5T3U5 1492 aa22.73■■□□□ 1.23
SHMT2-230ENST00000557427 PRG4Q92954 1404 aaPredicted RBP22.69■■□□□ 1.22
SHMT2-230ENST00000557427 FHAD1B1AJZ9 1412 aa22.66■■□□□ 1.22
SHMT2-230ENST00000557427 DIP2BQ9P265 1576 aa22.65■■□□□ 1.22
SHMT2-230ENST00000557427 JPH4Q96JJ6 628 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms