RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 KIAA0586Q9BVV6 1533 aa20.99■□□□□ 0.95
SLIRP-209ENST00000557342 JPH4Q96JJ6 628 aa20.97■□□□□ 0.95
SLIRP-209ENST00000557342 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
SLIRP-209ENST00000557342 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
SLIRP-209ENST00000557342 EEA1Q15075 1411 aa20.95■□□□□ 0.94
SLIRP-209ENST00000557342 PRG4Q92954 1404 aaPredicted RBP20.93■□□□□ 0.94
SLIRP-209ENST00000557342 IQGAP2Q13576 1575 aa20.9■□□□□ 0.94
SLIRP-209ENST00000557342 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
SLIRP-209ENST00000557342 CTTNBP2Q8WZ74 1663 aa20.89■□□□□ 0.93
SLIRP-209ENST00000557342 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
SLIRP-209ENST00000557342 CARMIL2Q6F5E8 1435 aa20.79■□□□□ 0.92
SLIRP-209ENST00000557342 UGGT2Q9NYU1 1516 aa20.78■□□□□ 0.92
SLIRP-209ENST00000557342 FAM9AQ8IZU1 332 aaPredicted RBP20.76■□□□□ 0.91
SLIRP-209ENST00000557342 KIF21BO75037 1637 aa20.74■□□□□ 0.91
SLIRP-209ENST00000557342 DISP1Q96F81 1524 aa20.71■□□□□ 0.91
SLIRP-209ENST00000557342 TNIKQ9UKE5 1360 aa20.71■□□□□ 0.91
SLIRP-209ENST00000557342 KIAA0556O60303 1618 aa20.69■□□□□ 0.9
SLIRP-209ENST00000557342 PTPRGP23470 1445 aa20.69■□□□□ 0.9
SLIRP-209ENST00000557342 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
SLIRP-209ENST00000557342 ADCY10Q96PN6 1610 aa20.64■□□□□ 0.89
SLIRP-209ENST00000557342 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
SLIRP-209ENST00000557342 NPM1P06748 294 aaKnown RBP eCLIP20.6■□□□□ 0.89
SLIRP-209ENST00000557342 TRHP20396 242 aaPredicted RBP20.6■□□□□ 0.89
SLIRP-209ENST00000557342 SAMD9Q5K651 1589 aa20.55■□□□□ 0.88
SLIRP-209ENST00000557342 UACAQ9BZF9 1416 aa20.55■□□□□ 0.88
SLIRP-209ENST00000557342 UHRF1BP1LA0JNW5 1464 aa20.55■□□□□ 0.88
SLIRP-209ENST00000557342 MAPKBP1O60336 1514 aa20.53■□□□□ 0.88
SLIRP-209ENST00000557342 ABCC2Q92887 1545 aa20.53■□□□□ 0.88
SLIRP-209ENST00000557342 UBTFP17480 764 aaKnown RBP20.51■□□□□ 0.87
SLIRP-209ENST00000557342 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
SLIRP-209ENST00000557342 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
SLIRP-209ENST00000557342 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
SLIRP-209ENST00000557342 ABCA8O94911 1581 aa20.46■□□□□ 0.87
SLIRP-209ENST00000557342 P3H3Q8IVL6 736 aa20.46■□□□□ 0.87
SLIRP-209ENST00000557342 PLB1Q6P1J6 1458 aa20.44■□□□□ 0.86
SLIRP-209ENST00000557342 KDM5BQ9UGL1 1544 aa20.44■□□□□ 0.86
SLIRP-209ENST00000557342 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
SLIRP-209ENST00000557342 ZCCHC11Q5TAX3 1644 aaKnown RBP20.43■□□□□ 0.86
SLIRP-209ENST00000557342 ABCC10Q5T3U5 1492 aa20.42■□□□□ 0.86
SLIRP-209ENST00000557342 DIP2BQ9P265 1576 aa20.4■□□□□ 0.86
SLIRP-209ENST00000557342 RAPGEF6Q8TEU7 1601 aa20.38■□□□□ 0.85
SLIRP-209ENST00000557342 FHOD3Q2V2M9 1422 aa20.37■□□□□ 0.85
SLIRP-209ENST00000557342 ASXL2Q76L83 1435 aa20.36■□□□□ 0.85
SLIRP-209ENST00000557342 FAM69CQ0P6D2 419 aa20.35■□□□□ 0.85
SLIRP-209ENST00000557342 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
SLIRP-209ENST00000557342 GLI2P10070 1586 aa20.3■□□□□ 0.84
SLIRP-209ENST00000557342 WDR7Q9Y4E6 1490 aa20.28■□□□□ 0.84
SLIRP-209ENST00000557342 TSPOAP1O95153 1857 aa20.28■□□□□ 0.84
SLIRP-209ENST00000557342 FMN1Q68DA7 1419 aa20.27■□□□□ 0.83
SLIRP-209ENST00000557342 ATP10BO94823 1461 aa20.26■□□□□ 0.83
SLIRP-209ENST00000557342 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
SLIRP-209ENST00000557342 NUP153P49790 1475 aaKnown RBP20.24■□□□□ 0.83
SLIRP-209ENST00000557342 MAP3K4Q9Y6R4 1608 aa20.21■□□□□ 0.83
SLIRP-209ENST00000557342 ARID3CA6NKF2 412 aa20.21■□□□□ 0.83
SLIRP-209ENST00000557342 HECW1Q76N89 1606 aa20.2■□□□□ 0.82
SLIRP-209ENST00000557342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.19■□□□□ 0.82
SLIRP-209ENST00000557342 HNRNPUL2Q1KMD3 747 aaKnown RBP20.19■□□□□ 0.82
SLIRP-209ENST00000557342 CLIP1P30622 1438 aa20.19■□□□□ 0.82
SLIRP-209ENST00000557342 CFAP43Q8NDM7 1665 aa20.18■□□□□ 0.82
SLIRP-209ENST00000557342 PPRC1Q5VV67 1664 aaKnown RBP20.17■□□□□ 0.82
SLIRP-209ENST00000557342 KCNH8Q96L42 1107 aa20.15■□□□□ 0.82
SLIRP-209ENST00000557342 TEX14Q8IWB6 1497 aa20.12■□□□□ 0.81
SLIRP-209ENST00000557342 ATP1B4Q9UN42 357 aaPredicted RBP20.12■□□□□ 0.81
SLIRP-209ENST00000557342 PLEKHD1A6NEE1 506 aa20.11■□□□□ 0.81
SLIRP-209ENST00000557342 KDM6BO15054 1643 aa20.1■□□□□ 0.81
SLIRP-209ENST00000557342 ABCA9Q8IUA7 1624 aa20.1■□□□□ 0.81
SLIRP-209ENST00000557342 CDK13Q14004 1512 aaKnown RBP20.1■□□□□ 0.81
SLIRP-209ENST00000557342 CD109Q6YHK3 1445 aa20.1■□□□□ 0.81
SLIRP-209ENST00000557342 PCF11O94913 1555 aaKnown RBP20.09■□□□□ 0.81
SLIRP-209ENST00000557342 LRRIQ1Q96JM4 1722 aa20.09■□□□□ 0.81
SLIRP-209ENST00000557342 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
SLIRP-209ENST00000557342 CASKIN1Q8WXD9 1431 aa20.09■□□□□ 0.81
SLIRP-209ENST00000557342 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
SLIRP-209ENST00000557342 MAGI3Q5TCQ9 1506 aa20.07■□□□□ 0.8
SLIRP-209ENST00000557342 FYCO1Q9BQS8 1478 aa20.05■□□□□ 0.8
SLIRP-209ENST00000557342 CDK11AQ9UQ88 783 aaPredicted RBP20.05■□□□□ 0.8
SLIRP-209ENST00000557342 CCDC18Q5T9S5 1454 aa20.05■□□□□ 0.8
SLIRP-209ENST00000557342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.98■□□□□ 0.79
SLIRP-209ENST00000557342 TROQ12816 1431 aaPredicted RBP19.96■□□□□ 0.79
SLIRP-209ENST00000557342 KIF14Q15058 1648 aa19.96■□□□□ 0.79
SLIRP-209ENST00000557342 TTC37Q6PGP7 1564 aa19.95■□□□□ 0.78
SLIRP-209ENST00000557342 PHLDB1Q86UU1 1377 aa19.95■□□□□ 0.78
SLIRP-209ENST00000557342 CFAP74Q9C0B2 1584 aa19.94■□□□□ 0.78
SLIRP-209ENST00000557342 MYO5CQ9NQX4 1742 aa19.93■□□□□ 0.78
SLIRP-209ENST00000557342 NEO1Q92859 1461 aa19.92■□□□□ 0.78
SLIRP-209ENST00000557342 COL17A1Q9UMD9 1497 aaPredicted RBP19.91■□□□□ 0.78
SLIRP-209ENST00000557342 ARAP3Q8WWN8 1544 aa19.9■□□□□ 0.78
SLIRP-209ENST00000557342 FANCAO15360 1455 aa19.86■□□□□ 0.77
SLIRP-209ENST00000557342 VPS8Q8N3P4 1428 aa19.86■□□□□ 0.77
SLIRP-209ENST00000557342 PLCH2O75038 1416 aa19.85■□□□□ 0.77
SLIRP-209ENST00000557342 AKNAQ7Z591 1439 aa19.83■□□□□ 0.76
SLIRP-209ENST00000557342 CDC42BPBQ9Y5S2 1711 aa19.81■□□□□ 0.76
SLIRP-209ENST00000557342 MTUS2Q5JR59 1369 aa19.81■□□□□ 0.76
SLIRP-209ENST00000557342 PREX2Q70Z35 1606 aa19.8■□□□□ 0.76
SLIRP-209ENST00000557342 CDC42BPAQ5VT25 1732 aa19.8■□□□□ 0.76
SLIRP-209ENST00000557342 EFCAB2Q5VUJ9 269 aa19.79■□□□□ 0.76
SLIRP-209ENST00000557342 ARHGAP5Q13017 1502 aa19.79■□□□□ 0.76
SLIRP-209ENST00000557342 EHBP1L1Q8N3D4 1523 aa19.79■□□□□ 0.76
SLIRP-209ENST00000557342 RICTORQ6R327 1708 aa19.78■□□□□ 0.76
SLIRP-209ENST00000557342 TIAM1Q13009 1591 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms