RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RANGAP1P46060 587 aaPredicted RBP17.51■□□□□ 0.39
TDP1-211ENST00000555178 NUP160Q12769 1436 aa17.48■□□□□ 0.39
TDP1-211ENST00000555178 TNIKQ9UKE5 1360 aa17.46■□□□□ 0.38
TDP1-211ENST00000555178 CLASP1Q7Z460 1538 aa17.42■□□□□ 0.38
TDP1-211ENST00000555178 IQGAP2Q13576 1575 aa17.41■□□□□ 0.38
TDP1-211ENST00000555178 KIAA0586Q9BVV6 1533 aa17.41■□□□□ 0.38
TDP1-211ENST00000555178 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
TDP1-211ENST00000555178 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
TDP1-211ENST00000555178 ERCC6L2Q5T890 1561 aa17.37■□□□□ 0.37
TDP1-211ENST00000555178 P3H3Q8IVL6 736 aa17.36■□□□□ 0.37
TDP1-211ENST00000555178 SHROOM2Q13796 1616 aa17.34■□□□□ 0.37
TDP1-211ENST00000555178 JPH4Q96JJ6 628 aa17.33■□□□□ 0.37
TDP1-211ENST00000555178 ARHGAP35Q9NRY4 1499 aa17.33■□□□□ 0.36
TDP1-211ENST00000555178 CLIP1P30622 1438 aa17.32■□□□□ 0.36
TDP1-211ENST00000555178 DISP1Q96F81 1524 aa17.31■□□□□ 0.36
TDP1-211ENST00000555178 UGGT2Q9NYU1 1516 aa17.31■□□□□ 0.36
TDP1-211ENST00000555178 SAMD9Q5K651 1589 aa17.3■□□□□ 0.36
TDP1-211ENST00000555178 ARAP1Q96P48 1450 aa17.28■□□□□ 0.36
TDP1-211ENST00000555178 PRG4Q92954 1404 aaPredicted RBP17.28■□□□□ 0.36
TDP1-211ENST00000555178 FHOD3Q2V2M9 1422 aa17.27■□□□□ 0.36
TDP1-211ENST00000555178 KIAA0556O60303 1618 aa17.27■□□□□ 0.35
TDP1-211ENST00000555178 TTBK1Q5TCY1 1321 aaPredicted RBP17.26■□□□□ 0.35
TDP1-211ENST00000555178 EFCAB5A4FU69 1503 aa17.21■□□□□ 0.35
TDP1-211ENST00000555178 ARHGEF11O15085 1522 aa17.16■□□□□ 0.34
TDP1-211ENST00000555178 RIMBP3CA6NJZ7 1639 aa17.15■□□□□ 0.34
TDP1-211ENST00000555178 RIMBP3BA6NNM3 1639 aa17.15■□□□□ 0.34
TDP1-211ENST00000555178 RIMBP3Q9UFD9 1639 aa17.15■□□□□ 0.34
TDP1-211ENST00000555178 CARMIL2Q6F5E8 1435 aa17.15■□□□□ 0.34
TDP1-211ENST00000555178 LRRIQ1Q96JM4 1722 aa17.13■□□□□ 0.33
TDP1-211ENST00000555178 PCF11O94913 1555 aaKnown RBP17.11■□□□□ 0.33
TDP1-211ENST00000555178 PLB1Q6P1J6 1458 aa17.11■□□□□ 0.33
TDP1-211ENST00000555178 VPS8Q8N3P4 1428 aa17.09■□□□□ 0.33
TDP1-211ENST00000555178 PTPRGP23470 1445 aa17.09■□□□□ 0.33
TDP1-211ENST00000555178 ARID3CA6NKF2 412 aa17.08■□□□□ 0.32
TDP1-211ENST00000555178 ABCA8O94911 1581 aa17.05■□□□□ 0.32
TDP1-211ENST00000555178 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
TDP1-211ENST00000555178 RAPGEF6Q8TEU7 1601 aa17.04■□□□□ 0.32
TDP1-211ENST00000555178 FMN1Q68DA7 1419 aa17.04■□□□□ 0.32
TDP1-211ENST00000555178 PPARGC1BQ86YN6 1023 aaKnown RBP17.02■□□□□ 0.32
TDP1-211ENST00000555178 CASKIN1Q8WXD9 1431 aa17.01■□□□□ 0.31
TDP1-211ENST00000555178 NUP153P49790 1475 aaKnown RBP17.01■□□□□ 0.31
TDP1-211ENST00000555178 ADCY10Q96PN6 1610 aa17.01■□□□□ 0.31
TDP1-211ENST00000555178 CYB5RLQ6IPT4 315 aa17.01■□□□□ 0.31
TDP1-211ENST00000555178 CDK13Q14004 1512 aaKnown RBP17■□□□□ 0.31
TDP1-211ENST00000555178 DNAJC5Q9H3Z4 198 aa17■□□□□ 0.31
TDP1-211ENST00000555178 UACAQ9BZF9 1416 aa16.98■□□□□ 0.31
TDP1-211ENST00000555178 FYCO1Q9BQS8 1478 aa16.98■□□□□ 0.31
TDP1-211ENST00000555178 HECW1Q76N89 1606 aa16.96■□□□□ 0.31
TDP1-211ENST00000555178 ABCC2Q92887 1545 aa16.96■□□□□ 0.3
TDP1-211ENST00000555178 EPRSP07814 1512 aaKnown RBP16.95■□□□□ 0.3
TDP1-211ENST00000555178 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
TDP1-211ENST00000555178 ATP10BO94823 1461 aa16.93■□□□□ 0.3
TDP1-211ENST00000555178 MAGI3Q5TCQ9 1506 aa16.93■□□□□ 0.3
TDP1-211ENST00000555178 CFAP43Q8NDM7 1665 aa16.92■□□□□ 0.3
TDP1-211ENST00000555178 ZCCHC11Q5TAX3 1644 aaKnown RBP16.92■□□□□ 0.3
TDP1-211ENST00000555178 TIAM1Q13009 1591 aa16.92■□□□□ 0.3
TDP1-211ENST00000555178 UHRF1BP1LA0JNW5 1464 aa16.9■□□□□ 0.3
TDP1-211ENST00000555178 KDM5BQ9UGL1 1544 aa16.87■□□□□ 0.29
TDP1-211ENST00000555178 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.86■□□□□ 0.29
TDP1-211ENST00000555178 HNRNPUL2Q1KMD3 747 aaKnown RBP16.86■□□□□ 0.29
TDP1-211ENST00000555178 CCDC18Q5T9S5 1454 aa16.83■□□□□ 0.29
TDP1-211ENST00000555178 LRRC9Q6ZRR7 1453 aa16.82■□□□□ 0.28
TDP1-211ENST00000555178 MAP3K1Q13233 1512 aa16.82■□□□□ 0.28
TDP1-211ENST00000555178 APLP2Q06481 763 aa16.81■□□□□ 0.28
TDP1-211ENST00000555178 KIF14Q15058 1648 aa16.8■□□□□ 0.28
TDP1-211ENST00000555178 ASXL2Q76L83 1435 aa16.76■□□□□ 0.27
TDP1-211ENST00000555178 MTUS2Q5JR59 1369 aa16.76■□□□□ 0.27
TDP1-211ENST00000555178 KCNH8Q96L42 1107 aa16.75■□□□□ 0.27
TDP1-211ENST00000555178 TROQ12816 1431 aaPredicted RBP16.74■□□□□ 0.27
TDP1-211ENST00000555178 PLEKHD1A6NEE1 506 aa16.74■□□□□ 0.27
TDP1-211ENST00000555178 EHBP1L1Q8N3D4 1523 aa16.73■□□□□ 0.27
TDP1-211ENST00000555178 NPM1P06748 294 aaKnown RBP eCLIP16.73■□□□□ 0.27
TDP1-211ENST00000555178 WDR7Q9Y4E6 1490 aa16.71■□□□□ 0.27
TDP1-211ENST00000555178 SUPT6HQ7KZ85 1726 aaKnown RBP16.71■□□□□ 0.27
TDP1-211ENST00000555178 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
TDP1-211ENST00000555178 TTC37Q6PGP7 1564 aa16.7■□□□□ 0.26
TDP1-211ENST00000555178 PHLDB1Q86UU1 1377 aa16.7■□□□□ 0.26
TDP1-211ENST00000555178 MAPKBP1O60336 1514 aa16.69■□□□□ 0.26
TDP1-211ENST00000555178 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.69■□□□□ 0.26
TDP1-211ENST00000555178 CDK11AQ9UQ88 783 aaPredicted RBP16.69■□□□□ 0.26
TDP1-211ENST00000555178 ABCC10Q5T3U5 1492 aa16.67■□□□□ 0.26
TDP1-211ENST00000555178 CDC42BPAQ5VT25 1732 aa16.67■□□□□ 0.26
TDP1-211ENST00000555178 KIF13AQ9H1H9 1805 aa16.66■□□□□ 0.26
TDP1-211ENST00000555178 CDC42BPBQ9Y5S2 1711 aa16.64■□□□□ 0.25
TDP1-211ENST00000555178 DIP2BQ9P265 1576 aa16.63■□□□□ 0.25
TDP1-211ENST00000555178 ABCA9Q8IUA7 1624 aa16.61■□□□□ 0.25
TDP1-211ENST00000555178 GPATCH8Q9UKJ3 1502 aaKnown RBP16.61■□□□□ 0.25
TDP1-211ENST00000555178 TSPOAP1O95153 1857 aa16.61■□□□□ 0.25
TDP1-211ENST00000555178 MYO5CQ9NQX4 1742 aa16.6■□□□□ 0.25
TDP1-211ENST00000555178 ZNF644Q9H582 1327 aaPredicted RBP16.59■□□□□ 0.25
TDP1-211ENST00000555178 PREX2Q70Z35 1606 aa16.58■□□□□ 0.24
TDP1-211ENST00000555178 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
TDP1-211ENST00000555178 FAM69CQ0P6D2 419 aa16.57■□□□□ 0.24
TDP1-211ENST00000555178 MYOM3Q5VTT5 1437 aa16.57■□□□□ 0.24
TDP1-211ENST00000555178 PCGF6Q9BYE7 350 aa16.57■□□□□ 0.24
TDP1-211ENST00000555178 MAP3K4Q9Y6R4 1608 aa16.56■□□□□ 0.24
TDP1-211ENST00000555178 TRIM26Q12899 539 aaPredicted RBP16.56■□□□□ 0.24
TDP1-211ENST00000555178 PPRC1Q5VV67 1664 aaKnown RBP16.55■□□□□ 0.24
TDP1-211ENST00000555178 ITSN2Q9NZM3 1697 aa16.55■□□□□ 0.24
TDP1-211ENST00000555178 FGD6Q6ZV73 1430 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms