RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 NISCHQ9Y2I1 1504 aa25.38■■□□□ 1.65
TDP1-211ENST00000555178 CCDC180Q9P1Z9 1646 aa22.3■■□□□ 1.16
TDP1-211ENST00000555178 ABCC9O60706 1549 aa21.54■■□□□ 1.04
TDP1-211ENST00000555178 ZCCHC6Q5VYS8 1495 aaKnown RBP21.23■□□□□ 0.99
TDP1-211ENST00000555178 DCAF8L2P0C7V8 631 aa21.12■□□□□ 0.97
TDP1-211ENST00000555178 DCAF1Q9Y4B6 1507 aa20.9■□□□□ 0.94
TDP1-211ENST00000555178 NACADO15069 1562 aa20.82■□□□□ 0.92
TDP1-211ENST00000555178 MYO15BQ96JP2 1530 aa20.77■□□□□ 0.92
TDP1-211ENST00000555178 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
TDP1-211ENST00000555178 SCRIBQ14160 1630 aa20.54■□□□□ 0.88
TDP1-211ENST00000555178 UNC13AQ9UPW8 1703 aa20.53■□□□□ 0.88
TDP1-211ENST00000555178 SHROOM4Q9ULL8 1493 aa20.52■□□□□ 0.87
TDP1-211ENST00000555178 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.84
TDP1-211ENST00000555178 PABPN1Q86U42 306 aaKnown RBP eCLIP20.25■□□□□ 0.83
TDP1-211ENST00000555178 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
TDP1-211ENST00000555178 MROH2BQ7Z745 1585 aa19.65■□□□□ 0.74
TDP1-211ENST00000555178 EIF4G1Q04637 1599 aaKnown RBP19.63■□□□□ 0.73
TDP1-211ENST00000555178 SMARCA4P51532 1647 aa19.62■□□□□ 0.73
TDP1-211ENST00000555178 BAZ1AQ9NRL2 1556 aaPredicted RBP19.58■□□□□ 0.73
TDP1-211ENST00000555178 RSF1Q96T23 1441 aaPredicted RBP19.54■□□□□ 0.72
TDP1-211ENST00000555178 WIZO95785 1651 aa19.51■□□□□ 0.71
TDP1-211ENST00000555178 SUPT5HO00267 1087 aaKnown RBP19.48■□□□□ 0.71
TDP1-211ENST00000555178 CC2D2AQ9P2K1 1620 aa19.47■□□□□ 0.71
TDP1-211ENST00000555178 DNAJC5BQ9UF47 199 aa19.47■□□□□ 0.71
TDP1-211ENST00000555178 ATAD2BQ9ULI0 1458 aa19.37■□□□□ 0.69
TDP1-211ENST00000555178 PEG3Q9GZU2 1588 aa19.35■□□□□ 0.69
TDP1-211ENST00000555178 SMARCA2P51531 1590 aa19.29■□□□□ 0.68
TDP1-211ENST00000555178 NCAPD3P42695 1498 aa19.24■□□□□ 0.67
TDP1-211ENST00000555178 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
TDP1-211ENST00000555178 TOP2AP11388 1531 aaKnown RBP19.18■□□□□ 0.66
TDP1-211ENST00000555178 HMGXB3Q12766 1538 aa19.17■□□□□ 0.66
TDP1-211ENST00000555178 CCDC88BA6NC98 1476 aa19.03■□□□□ 0.64
TDP1-211ENST00000555178 NESP48681 1621 aa18.83■□□□□ 0.6
TDP1-211ENST00000555178 CADPSQ9ULU8 1353 aa18.71■□□□□ 0.59
TDP1-211ENST00000555178 CFTRP13569 1480 aa18.71■□□□□ 0.59
TDP1-211ENST00000555178 PRDM2Q13029 1718 aa18.66■□□□□ 0.58
TDP1-211ENST00000555178 LAMC3Q9Y6N6 1575 aa18.65■□□□□ 0.58
TDP1-211ENST00000555178 KIF21AQ7Z4S6 1674 aa18.6■□□□□ 0.57
TDP1-211ENST00000555178 ABCC8Q09428 1581 aa18.56■□□□□ 0.56
TDP1-211ENST00000555178 FANCD2Q9BXW9 1451 aa18.54■□□□□ 0.56
TDP1-211ENST00000555178 PDS5BQ9NTI5 1447 aa18.47■□□□□ 0.55
TDP1-211ENST00000555178 CEP164Q9UPV0 1460 aa18.44■□□□□ 0.54
TDP1-211ENST00000555178 CHIC1Q5VXU3 224 aa18.42■□□□□ 0.54
TDP1-211ENST00000555178 ERCC6Q03468 1493 aa18.41■□□□□ 0.54
TDP1-211ENST00000555178 SYNJ1O43426 1573 aa18.41■□□□□ 0.54
TDP1-211ENST00000555178 CUX1P39880 1505 aa18.39■□□□□ 0.53
TDP1-211ENST00000555178 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.53
TDP1-211ENST00000555178 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
TDP1-211ENST00000555178 THOC2Q8NI27 1593 aaKnown RBP18.36■□□□□ 0.53
TDP1-211ENST00000555178 MRC2Q9UBG0 1479 aa18.31■□□□□ 0.52
TDP1-211ENST00000555178 TOPBP1Q92547 1522 aa18.31■□□□□ 0.52
TDP1-211ENST00000555178 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
TDP1-211ENST00000555178 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
TDP1-211ENST00000555178 DNMBPQ6XZF7 1577 aa18.29■□□□□ 0.52
TDP1-211ENST00000555178 TRIM41Q8WV44 630 aa18.26■□□□□ 0.51
TDP1-211ENST00000555178 WDR62O43379 1518 aa18.25■□□□□ 0.51
TDP1-211ENST00000555178 FGD5Q6ZNL6 1462 aa18.23■□□□□ 0.51
TDP1-211ENST00000555178 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
TDP1-211ENST00000555178 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
TDP1-211ENST00000555178 CUX2O14529 1486 aa18.17■□□□□ 0.5
TDP1-211ENST00000555178 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
TDP1-211ENST00000555178 RUSC2Q8N2Y8 1516 aa18.11■□□□□ 0.49
TDP1-211ENST00000555178 SOGA1O94964 1423 aa18.1■□□□□ 0.49
TDP1-211ENST00000555178 WDR97A6NE52 1622 aa18.08■□□□□ 0.48
TDP1-211ENST00000555178 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
TDP1-211ENST00000555178 FAM9AQ8IZU1 332 aaPredicted RBP18.03■□□□□ 0.48
TDP1-211ENST00000555178 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
TDP1-211ENST00000555178 ABCA10Q8WWZ4 1543 aa18.01■□□□□ 0.47
TDP1-211ENST00000555178 IFT140Q96RY7 1462 aa18■□□□□ 0.47
TDP1-211ENST00000555178 AQRO60306 1485 aaKnown RBP eCLIP17.99■□□□□ 0.472e-7■■■■□ 20.2
TDP1-211ENST00000555178 ABCA5Q8WWZ7 1642 aa17.95■□□□□ 0.46
TDP1-211ENST00000555178 EIF4G3O43432 1585 aaKnown RBP17.94■□□□□ 0.46
TDP1-211ENST00000555178 PBRM1Q86U86 1689 aa17.9■□□□□ 0.46
TDP1-211ENST00000555178 KIF27Q86VH2 1401 aa17.89■□□□□ 0.46
TDP1-211ENST00000555178 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.45
TDP1-211ENST00000555178 EHMT2Q96KQ7 1210 aa17.86■□□□□ 0.45
TDP1-211ENST00000555178 IGF1RP08069 1367 aa17.85■□□□□ 0.45
TDP1-211ENST00000555178 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
TDP1-211ENST00000555178 GRIN2BQ13224 1484 aa17.79■□□□□ 0.44
TDP1-211ENST00000555178 SNAPC4Q5SXM2 1469 aa17.78■□□□□ 0.44
TDP1-211ENST00000555178 LOC105371045A0A1W2PR82 267 aa17.78■□□□□ 0.44
TDP1-211ENST00000555178 EEA1Q15075 1411 aa17.77■□□□□ 0.44
TDP1-211ENST00000555178 ERICH3Q5RHP9 1530 aa17.77■□□□□ 0.44
TDP1-211ENST00000555178 ADAMTS12P58397 1594 aa17.73■□□□□ 0.43
TDP1-211ENST00000555178 PRXQ9BXM0 1461 aa17.73■□□□□ 0.43
TDP1-211ENST00000555178 RAPGEF2Q9Y4G8 1499 aa17.72■□□□□ 0.43
TDP1-211ENST00000555178 CARMIL1Q5VZK9 1371 aa17.72■□□□□ 0.43
TDP1-211ENST00000555178 CUL7Q14999 1698 aa17.71■□□□□ 0.43
TDP1-211ENST00000555178 CHD1O14646 1710 aa17.69■□□□□ 0.42
TDP1-211ENST00000555178 KIF21BO75037 1637 aa17.68■□□□□ 0.42
TDP1-211ENST00000555178 MAGI1Q96QZ7 1491 aaPredicted RBP17.67■□□□□ 0.42
TDP1-211ENST00000555178 FHAD1B1AJZ9 1412 aa17.65■□□□□ 0.42
TDP1-211ENST00000555178 FBLN2P98095 1184 aa17.65■□□□□ 0.42
TDP1-211ENST00000555178 SYNJ2O15056 1496 aa17.62■□□□□ 0.41
TDP1-211ENST00000555178 GRIN2AQ12879 1464 aa17.6■□□□□ 0.41
TDP1-211ENST00000555178 CHMP7Q8WUX9 453 aaPredicted RBP17.6■□□□□ 0.41
TDP1-211ENST00000555178 GOLGA3Q08378 1498 aa17.59■□□□□ 0.41
TDP1-211ENST00000555178 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
TDP1-211ENST00000555178 UBTFP17480 764 aaKnown RBP17.55■□□□□ 0.4
TDP1-211ENST00000555178 CTTNBP2Q8WZ74 1663 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms