RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KIAA0586Q9BVV6 1533 aa27.55■■■□□ 2
CCDC88C-209ENST00000554872 JPH4Q96JJ6 628 aa27.51■■□□□ 1.99
CCDC88C-209ENST00000554872 PRG4Q92954 1404 aaPredicted RBP27.5■■□□□ 1.99
CCDC88C-209ENST00000554872 RAPGEF2Q9Y4G8 1499 aa27.38■■□□□ 1.97
CCDC88C-209ENST00000554872 IQGAP2Q13576 1575 aa27.33■■□□□ 1.97
CCDC88C-209ENST00000554872 PRXQ9BXM0 1461 aa27.26■■□□□ 1.95
CCDC88C-209ENST00000554872 TRHP20396 242 aaPredicted RBP27.25■■□□□ 1.95
CCDC88C-209ENST00000554872 CARMIL2Q6F5E8 1435 aa27.23■■□□□ 1.95
CCDC88C-209ENST00000554872 UGGT2Q9NYU1 1516 aa27.22■■□□□ 1.95
CCDC88C-209ENST00000554872 ADCY10Q96PN6 1610 aa27.17■■□□□ 1.94
CCDC88C-209ENST00000554872 EEA1Q15075 1411 aa27.16■■□□□ 1.94
CCDC88C-209ENST00000554872 DISP1Q96F81 1524 aa27.16■■□□□ 1.94
CCDC88C-209ENST00000554872 TNIKQ9UKE5 1360 aa27.16■■□□□ 1.94
CCDC88C-209ENST00000554872 CTTNBP2Q8WZ74 1663 aa27.15■■□□□ 1.94
CCDC88C-209ENST00000554872 PTPRGP23470 1445 aa27.14■■□□□ 1.93
CCDC88C-209ENST00000554872 MAPKBP1O60336 1514 aa27.13■■□□□ 1.93
CCDC88C-209ENST00000554872 KIAA0556O60303 1618 aa27.08■■□□□ 1.93
CCDC88C-209ENST00000554872 CSRNP3Q8WYN3 585 aa27.05■■□□□ 1.92
CCDC88C-209ENST00000554872 UHRF1BP1LA0JNW5 1464 aa27.05■■□□□ 1.92
CCDC88C-209ENST00000554872 NPM1P06748 294 aaKnown RBP eCLIP27.02■■□□□ 1.92
CCDC88C-209ENST00000554872 GOLGA3Q08378 1498 aa27.01■■□□□ 1.91
CCDC88C-209ENST00000554872 ABCC10Q5T3U5 1492 aa27■■□□□ 1.91
CCDC88C-209ENST00000554872 KIF13AQ9H1H9 1805 aa27■■□□□ 1.91
CCDC88C-209ENST00000554872 ABCC2Q92887 1545 aa27■■□□□ 1.91
CCDC88C-209ENST00000554872 UACAQ9BZF9 1416 aa26.98■■□□□ 1.91
CCDC88C-209ENST00000554872 DIP2BQ9P265 1576 aa26.94■■□□□ 1.9
CCDC88C-209ENST00000554872 KDM5BQ9UGL1 1544 aa26.9■■□□□ 1.9
CCDC88C-209ENST00000554872 CHIC1Q5VXU3 224 aa26.9■■□□□ 1.9
CCDC88C-209ENST00000554872 KIF21BO75037 1637 aa26.89■■□□□ 1.9
CCDC88C-209ENST00000554872 PLB1Q6P1J6 1458 aa26.85■■□□□ 1.89
CCDC88C-209ENST00000554872 SAMD9Q5K651 1589 aa26.84■■□□□ 1.89
CCDC88C-209ENST00000554872 ABCA8O94911 1581 aa26.82■■□□□ 1.88
CCDC88C-209ENST00000554872 TTBK1Q5TCY1 1321 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-209ENST00000554872 FAM69CQ0P6D2 419 aa26.81■■□□□ 1.88
CCDC88C-209ENST00000554872 ASXL2Q76L83 1435 aa26.81■■□□□ 1.88
CCDC88C-209ENST00000554872 GLI2P10070 1586 aa26.79■■□□□ 1.88
CCDC88C-209ENST00000554872 ZCCHC11Q5TAX3 1644 aaKnown RBP26.78■■□□□ 1.88
CCDC88C-209ENST00000554872 FAM9AQ8IZU1 332 aaPredicted RBP26.69■■□□□ 1.86
CCDC88C-209ENST00000554872 EPRSP07814 1512 aaKnown RBP26.68■■□□□ 1.86
CCDC88C-209ENST00000554872 EFCAB5A4FU69 1503 aa26.67■■□□□ 1.86
CCDC88C-209ENST00000554872 WDR7Q9Y4E6 1490 aa26.67■■□□□ 1.86
CCDC88C-209ENST00000554872 MAP3K4Q9Y6R4 1608 aa26.61■■□□□ 1.85
CCDC88C-209ENST00000554872 PPRC1Q5VV67 1664 aaKnown RBP26.6■■□□□ 1.85
CCDC88C-209ENST00000554872 RAPGEF6Q8TEU7 1601 aa26.58■■□□□ 1.85
CCDC88C-209ENST00000554872 TSPOAP1O95153 1857 aa26.56■■□□□ 1.84
CCDC88C-209ENST00000554872 P3H3Q8IVL6 736 aa26.56■■□□□ 1.84
CCDC88C-209ENST00000554872 ATP10BO94823 1461 aa26.55■■□□□ 1.84
CCDC88C-209ENST00000554872 KDM6BO15054 1643 aa26.54■■□□□ 1.84
CCDC88C-209ENST00000554872 FHOD3Q2V2M9 1422 aa26.54■■□□□ 1.84
CCDC88C-209ENST00000554872 TEX14Q8IWB6 1497 aa26.51■■□□□ 1.83
CCDC88C-209ENST00000554872 NUP153P49790 1475 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-209ENST00000554872 CFAP43Q8NDM7 1665 aa26.49■■□□□ 1.83
CCDC88C-209ENST00000554872 MAGI3Q5TCQ9 1506 aa26.45■■□□□ 1.83
CCDC88C-209ENST00000554872 UBTFP17480 764 aaKnown RBP26.45■■□□□ 1.82
CCDC88C-209ENST00000554872 ARHGAP35Q9NRY4 1499 aa26.42■■□□□ 1.82
CCDC88C-209ENST00000554872 CD109Q6YHK3 1445 aa26.4■■□□□ 1.82
CCDC88C-209ENST00000554872 ABCA9Q8IUA7 1624 aa26.39■■□□□ 1.81
CCDC88C-209ENST00000554872 FMN1Q68DA7 1419 aa26.39■■□□□ 1.81
CCDC88C-209ENST00000554872 RANGAP1P46060 587 aaPredicted RBP26.38■■□□□ 1.81
CCDC88C-209ENST00000554872 KCNH8Q96L42 1107 aa26.33■■□□□ 1.81
CCDC88C-209ENST00000554872 COL17A1Q9UMD9 1497 aaPredicted RBP26.33■■□□□ 1.81
CCDC88C-209ENST00000554872 ARID3CA6NKF2 412 aa26.3■■□□□ 1.8
CCDC88C-209ENST00000554872 HECW1Q76N89 1606 aa26.29■■□□□ 1.8
CCDC88C-209ENST00000554872 PHLDB1Q86UU1 1377 aa26.26■■□□□ 1.79
CCDC88C-209ENST00000554872 EHMT2Q96KQ7 1210 aa26.26■■□□□ 1.79
CCDC88C-209ENST00000554872 ARAP3Q8WWN8 1544 aa26.24■■□□□ 1.79
CCDC88C-209ENST00000554872 PLEKHD1A6NEE1 506 aa26.23■■□□□ 1.79
CCDC88C-209ENST00000554872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.23■■□□□ 1.79
CCDC88C-209ENST00000554872 HNRNPUL2Q1KMD3 747 aaKnown RBP26.23■■□□□ 1.79
CCDC88C-209ENST00000554872 CDK13Q14004 1512 aaKnown RBP26.22■■□□□ 1.79
CCDC88C-209ENST00000554872 NEO1Q92859 1461 aa26.21■■□□□ 1.79
CCDC88C-209ENST00000554872 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.16■■□□□ 1.78
CCDC88C-209ENST00000554872 CASKIN1Q8WXD9 1431 aa26.14■■□□□ 1.78
CCDC88C-209ENST00000554872 CLIP1P30622 1438 aa26.13■■□□□ 1.77
CCDC88C-209ENST00000554872 AEBP2Q6ZN18 517 aaPredicted RBP26.11■■□□□ 1.77
CCDC88C-209ENST00000554872 TTC37Q6PGP7 1564 aa26.11■■□□□ 1.77
CCDC88C-209ENST00000554872 CFAP74Q9C0B2 1584 aa26.11■■□□□ 1.77
CCDC88C-209ENST00000554872 PCF11O94913 1555 aaKnown RBP26.1■■□□□ 1.77
CCDC88C-209ENST00000554872 CCDC18Q5T9S5 1454 aa26.1■■□□□ 1.77
CCDC88C-209ENST00000554872 CDK11AQ9UQ88 783 aaPredicted RBP26.09■■□□□ 1.77
CCDC88C-209ENST00000554872 FYCO1Q9BQS8 1478 aa26.09■■□□□ 1.77
CCDC88C-209ENST00000554872 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.77
CCDC88C-209ENST00000554872 TROQ12816 1431 aaPredicted RBP26.06■■□□□ 1.76
CCDC88C-209ENST00000554872 FANCAO15360 1455 aa26.04■■□□□ 1.76
CCDC88C-209ENST00000554872 KIF14Q15058 1648 aa26.03■■□□□ 1.76
CCDC88C-209ENST00000554872 KDM4FA0A1W2PPD8 638 aa26.02■■□□□ 1.76
CCDC88C-209ENST00000554872 PLCH2O75038 1416 aa26.02■■□□□ 1.76
CCDC88C-209ENST00000554872 FRMPD1Q5SYB0 1578 aa26.02■■□□□ 1.76
CCDC88C-209ENST00000554872 ATP1B4Q9UN42 357 aaPredicted RBP26■■□□□ 1.75
CCDC88C-209ENST00000554872 AKNAQ7Z591 1439 aa25.99■■□□□ 1.75
CCDC88C-209ENST00000554872 ADGRL1O94910 1474 aa25.97■■□□□ 1.75
CCDC88C-209ENST00000554872 MYO5CQ9NQX4 1742 aa25.97■■□□□ 1.75
CCDC88C-209ENST00000554872 RICTORQ6R327 1708 aa25.96■■□□□ 1.75
CCDC88C-209ENST00000554872 DENND4BO75064 1496 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-209ENST00000554872 CEP162Q5TB80 1403 aa25.94■■□□□ 1.74
CCDC88C-209ENST00000554872 ZMYM4Q5VZL5 1548 aa25.93■■□□□ 1.74
CCDC88C-209ENST00000554872 RAPGEF3O95398 923 aa25.91■■□□□ 1.74
CCDC88C-209ENST00000554872 ARHGEF40Q8TER5 1519 aa25.88■■□□□ 1.73
CCDC88C-209ENST00000554872 MAGI2Q86UL8 1455 aa25.86■■□□□ 1.73
CCDC88C-209ENST00000554872 EFCAB2Q5VUJ9 269 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms