RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NISCHQ9Y2I1 1504 aa39.72■■■■□ 3.95
CCDC88C-209ENST00000554872 CCDC180Q9P1Z9 1646 aa35.52■■■■□ 3.28
CCDC88C-209ENST00000554872 ABCC9O60706 1549 aa34.82■■■■□ 3.16
CCDC88C-209ENST00000554872 RB1CC1Q8TDY2 1594 aa33.51■■■□□ 2.95
CCDC88C-209ENST00000554872 NACADO15069 1562 aa33.44■■■□□ 2.94
CCDC88C-209ENST00000554872 MYO15BQ96JP2 1530 aa33.26■■■□□ 2.91
CCDC88C-209ENST00000554872 ZCCHC6Q5VYS8 1495 aaKnown RBP33.06■■■□□ 2.88
CCDC88C-209ENST00000554872 DCAF8L2P0C7V8 631 aa32.98■■■□□ 2.87
CCDC88C-209ENST00000554872 DCAF1Q9Y4B6 1507 aa32.97■■■□□ 2.87
CCDC88C-209ENST00000554872 UNC13AQ9UPW8 1703 aa32.69■■■□□ 2.82
CCDC88C-209ENST00000554872 BICRAQ9NZM4 1560 aa32.49■■■□□ 2.79
CCDC88C-209ENST00000554872 PABPN1Q86U42 306 aaKnown RBP eCLIP32.41■■■□□ 2.78
CCDC88C-209ENST00000554872 SHROOM4Q9ULL8 1493 aa32.3■■■□□ 2.76
CCDC88C-209ENST00000554872 SCRIBQ14160 1630 aa32.21■■■□□ 2.75
CCDC88C-209ENST00000554872 DNAJC5BQ9UF47 199 aa32.19■■■□□ 2.74
CCDC88C-209ENST00000554872 EIF4G1Q04637 1599 aaKnown RBP31.65■■■□□ 2.66
CCDC88C-209ENST00000554872 CC2D2AQ9P2K1 1620 aa31.56■■■□□ 2.64
CCDC88C-209ENST00000554872 CECR2Q9BXF3 1484 aa31.38■■■□□ 2.61
CCDC88C-209ENST00000554872 SMARCA4P51532 1647 aa30.87■■■□□ 2.53
CCDC88C-209ENST00000554872 NCAPD3P42695 1498 aa30.85■■■□□ 2.53
CCDC88C-209ENST00000554872 BAZ1AQ9NRL2 1556 aaPredicted RBP30.82■■■□□ 2.52
CCDC88C-209ENST00000554872 ATAD2BQ9ULI0 1458 aa30.78■■■□□ 2.52
CCDC88C-209ENST00000554872 SMARCA2P51531 1590 aa30.76■■■□□ 2.52
CCDC88C-209ENST00000554872 HMGXB3Q12766 1538 aa30.7■■■□□ 2.51
CCDC88C-209ENST00000554872 PEG3Q9GZU2 1588 aa30.69■■■□□ 2.5
CCDC88C-209ENST00000554872 MROH2BQ7Z745 1585 aa30.55■■■□□ 2.48
CCDC88C-209ENST00000554872 BAZ1BQ9UIG0 1483 aaKnown RBP30.48■■■□□ 2.47
CCDC88C-209ENST00000554872 WIZO95785 1651 aa30.17■■■□□ 2.42
CCDC88C-209ENST00000554872 RSF1Q96T23 1441 aaPredicted RBP30.12■■■□□ 2.41
CCDC88C-209ENST00000554872 LAMC3Q9Y6N6 1575 aa30.08■■■□□ 2.41
CCDC88C-209ENST00000554872 ERCC6Q03468 1493 aa30.06■■■□□ 2.4
CCDC88C-209ENST00000554872 NESP48681 1621 aa30.05■■■□□ 2.4
CCDC88C-209ENST00000554872 CUX2O14529 1486 aa29.98■■■□□ 2.39
CCDC88C-209ENST00000554872 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
CCDC88C-209ENST00000554872 CADPSQ9ULU8 1353 aa29.88■■■□□ 2.37
CCDC88C-209ENST00000554872 PDS5BQ9NTI5 1447 aa29.84■■■□□ 2.37
CCDC88C-209ENST00000554872 THOC2Q8NI27 1593 aaKnown RBP29.78■■■□□ 2.36
CCDC88C-209ENST00000554872 KIF21AQ7Z4S6 1674 aa29.73■■■□□ 2.35
CCDC88C-209ENST00000554872 CFTRP13569 1480 aa29.68■■■□□ 2.34
CCDC88C-209ENST00000554872 MRC2Q9UBG0 1479 aa29.55■■■□□ 2.32
CCDC88C-209ENST00000554872 FANCD2Q9BXW9 1451 aa29.52■■■□□ 2.32
CCDC88C-209ENST00000554872 CEP164Q9UPV0 1460 aa29.52■■■□□ 2.32
CCDC88C-209ENST00000554872 WDR62O43379 1518 aa29.51■■■□□ 2.32
CCDC88C-209ENST00000554872 CCDC88BA6NC98 1476 aa29.51■■■□□ 2.31
CCDC88C-209ENST00000554872 PRDM2Q13029 1718 aa29.44■■■□□ 2.3
CCDC88C-209ENST00000554872 DNAJC5Q9H3Z4 198 aa29.29■■■□□ 2.28
CCDC88C-209ENST00000554872 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
CCDC88C-209ENST00000554872 ABCC8Q09428 1581 aa29.08■■■□□ 2.25
CCDC88C-209ENST00000554872 TOPBP1Q92547 1522 aa29.03■■■□□ 2.24
CCDC88C-209ENST00000554872 DNMBPQ6XZF7 1577 aa29■■■□□ 2.23
CCDC88C-209ENST00000554872 IFT140Q96RY7 1462 aa28.95■■■□□ 2.22
CCDC88C-209ENST00000554872 SUPT5HO00267 1087 aaKnown RBP28.9■■■□□ 2.22
CCDC88C-209ENST00000554872 POLA1P09884 1462 aaPredicted RBP28.77■■■□□ 2.2
CCDC88C-209ENST00000554872 TARBP1Q13395 1621 aaKnown RBP28.76■■■□□ 2.2
CCDC88C-209ENST00000554872 ZNF608Q9ULD9 1512 aaPredicted RBP28.76■■■□□ 2.19
CCDC88C-209ENST00000554872 CUX1P39880 1505 aa28.69■■■□□ 2.18
CCDC88C-209ENST00000554872 EIF4G3O43432 1585 aaKnown RBP28.69■■■□□ 2.18
CCDC88C-209ENST00000554872 WDR97A6NE52 1622 aa28.63■■■□□ 2.17
CCDC88C-209ENST00000554872 FGD5Q6ZNL6 1462 aa28.63■■■□□ 2.17
CCDC88C-209ENST00000554872 SOGA1O94964 1423 aa28.6■■■□□ 2.17
CCDC88C-209ENST00000554872 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
CCDC88C-209ENST00000554872 OSCARQ8IYS5 282 aa28.55■■■□□ 2.16
CCDC88C-209ENST00000554872 AQRO60306 1485 aaKnown RBP eCLIP28.53■■■□□ 2.162e-7■■■■■ 29
CCDC88C-209ENST00000554872 TDRD9Q8NDG6 1382 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-209ENST00000554872 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
CCDC88C-209ENST00000554872 TOP2BQ02880 1626 aa28.41■■■□□ 2.14
CCDC88C-209ENST00000554872 ABCA10Q8WWZ4 1543 aa28.41■■■□□ 2.14
CCDC88C-209ENST00000554872 WRNQ14191 1432 aaPredicted RBP eCLIP28.39■■■□□ 2.14
CCDC88C-209ENST00000554872 GRIN2BQ13224 1484 aa28.35■■■□□ 2.13
CCDC88C-209ENST00000554872 MAGI1Q96QZ7 1491 aaPredicted RBP28.34■■■□□ 2.13
CCDC88C-209ENST00000554872 CHD1O14646 1710 aa28.33■■■□□ 2.13
CCDC88C-209ENST00000554872 SYNJ1O43426 1573 aa28.33■■■□□ 2.12
CCDC88C-209ENST00000554872 ABCA5Q8WWZ7 1642 aa28.32■■■□□ 2.12
CCDC88C-209ENST00000554872 SNAPC4Q5SXM2 1469 aa28.31■■■□□ 2.12
CCDC88C-209ENST00000554872 GAPVD1Q14C86 1478 aa28.28■■■□□ 2.12
CCDC88C-209ENST00000554872 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
CCDC88C-209ENST00000554872 SYNJ2O15056 1496 aa28.21■■■□□ 2.11
CCDC88C-209ENST00000554872 RIMBP3CA6NJZ7 1639 aa28.17■■■□□ 2.1
CCDC88C-209ENST00000554872 RIMBP3BA6NNM3 1639 aa28.17■■■□□ 2.1
CCDC88C-209ENST00000554872 RIMBP3Q9UFD9 1639 aa28.17■■■□□ 2.1
CCDC88C-209ENST00000554872 ARHGEF11O15085 1522 aa28.15■■■□□ 2.1
CCDC88C-209ENST00000554872 FBLN2P98095 1184 aa28.13■■■□□ 2.09
CCDC88C-209ENST00000554872 CLASP1Q7Z460 1538 aa28.12■■■□□ 2.09
CCDC88C-209ENST00000554872 CHMP7Q8WUX9 453 aaPredicted RBP28.1■■■□□ 2.09
CCDC88C-209ENST00000554872 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.08
CCDC88C-209ENST00000554872 ADAMTS12P58397 1594 aa28.05■■■□□ 2.08
CCDC88C-209ENST00000554872 TRIM41Q8WV44 630 aa28.03■■■□□ 2.08
CCDC88C-209ENST00000554872 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
CCDC88C-209ENST00000554872 FHAD1B1AJZ9 1412 aa27.98■■■□□ 2.07
CCDC88C-209ENST00000554872 NUP160Q12769 1436 aa27.92■■■□□ 2.06
CCDC88C-209ENST00000554872 ARAP1Q96P48 1450 aa27.9■■■□□ 2.06
CCDC88C-209ENST00000554872 CEP170Q5SW79 1584 aa27.84■■■□□ 2.05
CCDC88C-209ENST00000554872 KIF27Q86VH2 1401 aa27.84■■■□□ 2.05
CCDC88C-209ENST00000554872 CYB5RLQ6IPT4 315 aa27.77■■■□□ 2.04
CCDC88C-209ENST00000554872 SHROOM2Q13796 1616 aa27.75■■■□□ 2.03
CCDC88C-209ENST00000554872 CUL7Q14999 1698 aa27.75■■■□□ 2.03
CCDC88C-209ENST00000554872 IGF1RP08069 1367 aa27.74■■■□□ 2.03
CCDC88C-209ENST00000554872 RUSC2Q8N2Y8 1516 aa27.65■■■□□ 2.02
CCDC88C-209ENST00000554872 ERCC6L2Q5T890 1561 aa27.6■■■□□ 2.01
CCDC88C-209ENST00000554872 CARMIL1Q5VZK9 1371 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms