RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 KIAA0586Q9BVV6 1533 aa22.25■■□□□ 1.15
SHMT2-211ENST00000554310 PRG4Q92954 1404 aaPredicted RBP22.21■■□□□ 1.15
SHMT2-211ENST00000554310 JPH4Q96JJ6 628 aa22.18■■□□□ 1.14
SHMT2-211ENST00000554310 RAPGEF2Q9Y4G8 1499 aa22.17■■□□□ 1.14
SHMT2-211ENST00000554310 IQGAP2Q13576 1575 aa22.13■■□□□ 1.13
SHMT2-211ENST00000554310 PRXQ9BXM0 1461 aa22.06■■□□□ 1.12
SHMT2-211ENST00000554310 CTTNBP2Q8WZ74 1663 aa22.05■■□□□ 1.12
SHMT2-211ENST00000554310 EEA1Q15075 1411 aa22.03■■□□□ 1.12
SHMT2-211ENST00000554310 CARMIL2Q6F5E8 1435 aa22■■□□□ 1.11
SHMT2-211ENST00000554310 UGGT2Q9NYU1 1516 aa22■■□□□ 1.11
SHMT2-211ENST00000554310 DISP1Q96F81 1524 aa21.96■■□□□ 1.11
SHMT2-211ENST00000554310 ADCY10Q96PN6 1610 aa21.95■■□□□ 1.1
SHMT2-211ENST00000554310 TRHP20396 242 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-211ENST00000554310 KIAA0556O60303 1618 aa21.93■■□□□ 1.1
SHMT2-211ENST00000554310 TNIKQ9UKE5 1360 aa21.93■■□□□ 1.1
SHMT2-211ENST00000554310 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
SHMT2-211ENST00000554310 PTPRGP23470 1445 aa21.91■■□□□ 1.1
SHMT2-211ENST00000554310 CHIC1Q5VXU3 224 aa21.88■■□□□ 1.09
SHMT2-211ENST00000554310 MAPKBP1O60336 1514 aa21.87■■□□□ 1.09
SHMT2-211ENST00000554310 GOLGA3Q08378 1498 aa21.86■■□□□ 1.09
SHMT2-211ENST00000554310 KIF21BO75037 1637 aa21.84■■□□□ 1.09
SHMT2-211ENST00000554310 UHRF1BP1LA0JNW5 1464 aa21.82■■□□□ 1.08
SHMT2-211ENST00000554310 NPM1P06748 294 aaKnown RBP eCLIP21.81■■□□□ 1.08
SHMT2-211ENST00000554310 KIF13AQ9H1H9 1805 aa21.8■■□□□ 1.08
SHMT2-211ENST00000554310 ABCC2Q92887 1545 aa21.8■■□□□ 1.08
SHMT2-211ENST00000554310 UACAQ9BZF9 1416 aa21.79■■□□□ 1.08
SHMT2-211ENST00000554310 TTBK1Q5TCY1 1321 aaPredicted RBP21.77■■□□□ 1.07
SHMT2-211ENST00000554310 FAM9AQ8IZU1 332 aaPredicted RBP21.75■■□□□ 1.07
SHMT2-211ENST00000554310 ABCC10Q5T3U5 1492 aa21.75■■□□□ 1.07
SHMT2-211ENST00000554310 DIP2BQ9P265 1576 aa21.74■■□□□ 1.07
SHMT2-211ENST00000554310 SAMD9Q5K651 1589 aa21.74■■□□□ 1.07
SHMT2-211ENST00000554310 KDM5BQ9UGL1 1544 aa21.7■■□□□ 1.06
SHMT2-211ENST00000554310 ABCA8O94911 1581 aa21.69■■□□□ 1.06
SHMT2-211ENST00000554310 ZCCHC11Q5TAX3 1644 aaKnown RBP21.67■■□□□ 1.06
SHMT2-211ENST00000554310 PLB1Q6P1J6 1458 aa21.66■■□□□ 1.06
SHMT2-211ENST00000554310 ASXL2Q76L83 1435 aa21.64■■□□□ 1.06
SHMT2-211ENST00000554310 EFCAB5A4FU69 1503 aa21.63■■□□□ 1.05
SHMT2-211ENST00000554310 FAM69CQ0P6D2 419 aa21.61■■□□□ 1.05
SHMT2-211ENST00000554310 GLI2P10070 1586 aa21.59■■□□□ 1.05
SHMT2-211ENST00000554310 RAPGEF6Q8TEU7 1601 aa21.55■■□□□ 1.04
SHMT2-211ENST00000554310 WDR7Q9Y4E6 1490 aa21.54■■□□□ 1.04
SHMT2-211ENST00000554310 P3H3Q8IVL6 736 aa21.54■■□□□ 1.04
SHMT2-211ENST00000554310 EPRSP07814 1512 aaKnown RBP21.53■■□□□ 1.04
SHMT2-211ENST00000554310 FHOD3Q2V2M9 1422 aa21.53■■□□□ 1.04
SHMT2-211ENST00000554310 TSPOAP1O95153 1857 aa21.52■■□□□ 1.03
SHMT2-211ENST00000554310 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
SHMT2-211ENST00000554310 MAP3K4Q9Y6R4 1608 aa21.49■■□□□ 1.03
SHMT2-211ENST00000554310 RANGAP1P46060 587 aaPredicted RBP21.48■■□□□ 1.03
SHMT2-211ENST00000554310 PPRC1Q5VV67 1664 aaKnown RBP21.47■■□□□ 1.03
SHMT2-211ENST00000554310 EHMT2Q96KQ7 1210 aa21.44■■□□□ 1.02
SHMT2-211ENST00000554310 ATP10BO94823 1461 aa21.44■■□□□ 1.02
SHMT2-211ENST00000554310 NUP153P49790 1475 aaKnown RBP21.44■■□□□ 1.02
SHMT2-211ENST00000554310 KDM6BO15054 1643 aa21.44■■□□□ 1.02
SHMT2-211ENST00000554310 CFAP43Q8NDM7 1665 aa21.42■■□□□ 1.02
SHMT2-211ENST00000554310 ARHGAP35Q9NRY4 1499 aa21.42■■□□□ 1.02
SHMT2-211ENST00000554310 TEX14Q8IWB6 1497 aa21.39■■□□□ 1.02
SHMT2-211ENST00000554310 FMN1Q68DA7 1419 aa21.38■■□□□ 1.01
SHMT2-211ENST00000554310 ARID3CA6NKF2 412 aa21.36■■□□□ 1.01
SHMT2-211ENST00000554310 HECW1Q76N89 1606 aa21.34■■□□□ 1.01
SHMT2-211ENST00000554310 MAGI3Q5TCQ9 1506 aa21.33■■□□□ 1
SHMT2-211ENST00000554310 ABCA9Q8IUA7 1624 aa21.33■■□□□ 1
SHMT2-211ENST00000554310 CD109Q6YHK3 1445 aa21.3■■□□□ 1
SHMT2-211ENST00000554310 KCNH8Q96L42 1107 aa21.3■■□□□ 1
SHMT2-211ENST00000554310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.28■■□□□ 1
SHMT2-211ENST00000554310 HNRNPUL2Q1KMD3 747 aaKnown RBP21.28■■□□□ 1
SHMT2-211ENST00000554310 CDK13Q14004 1512 aaKnown RBP21.26■□□□□ 0.99
SHMT2-211ENST00000554310 CLIP1P30622 1438 aa21.23■□□□□ 0.99
SHMT2-211ENST00000554310 PCF11O94913 1555 aaKnown RBP21.22■□□□□ 0.99
SHMT2-211ENST00000554310 PLEKHD1A6NEE1 506 aa21.21■□□□□ 0.99
SHMT2-211ENST00000554310 COL17A1Q9UMD9 1497 aaPredicted RBP21.2■□□□□ 0.98
SHMT2-211ENST00000554310 LRRIQ1Q96JM4 1722 aa21.19■□□□□ 0.98
SHMT2-211ENST00000554310 CASKIN1Q8WXD9 1431 aa21.18■□□□□ 0.98
SHMT2-211ENST00000554310 TTC37Q6PGP7 1564 aa21.16■□□□□ 0.98
SHMT2-211ENST00000554310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.16■□□□□ 0.98
SHMT2-211ENST00000554310 FYCO1Q9BQS8 1478 aa21.16■□□□□ 0.98
SHMT2-211ENST00000554310 CCDC18Q5T9S5 1454 aa21.15■□□□□ 0.98
SHMT2-211ENST00000554310 NEO1Q92859 1461 aa21.15■□□□□ 0.98
SHMT2-211ENST00000554310 ARAP3Q8WWN8 1544 aa21.14■□□□□ 0.98
SHMT2-211ENST00000554310 PHLDB1Q86UU1 1377 aa21.14■□□□□ 0.98
SHMT2-211ENST00000554310 AEBP2Q6ZN18 517 aaPredicted RBP21.13■□□□□ 0.97
SHMT2-211ENST00000554310 ATP1B4Q9UN42 357 aaPredicted RBP21.13■□□□□ 0.97
SHMT2-211ENST00000554310 CFAP74Q9C0B2 1584 aa21.13■□□□□ 0.97
SHMT2-211ENST00000554310 KIF14Q15058 1648 aa21.11■□□□□ 0.97
SHMT2-211ENST00000554310 CDK11AQ9UQ88 783 aaPredicted RBP21.11■□□□□ 0.97
SHMT2-211ENST00000554310 CEP162Q5TB80 1403 aa21.11■□□□□ 0.97
SHMT2-211ENST00000554310 TROQ12816 1431 aaPredicted RBP21.1■□□□□ 0.97
SHMT2-211ENST00000554310 MYO5CQ9NQX4 1742 aa21.07■□□□□ 0.96
SHMT2-211ENST00000554310 FANCAO15360 1455 aa21.06■□□□□ 0.96
SHMT2-211ENST00000554310 FRMPD1Q5SYB0 1578 aa21.02■□□□□ 0.96
SHMT2-211ENST00000554310 PLCH2O75038 1416 aa21.01■□□□□ 0.95
SHMT2-211ENST00000554310 RICTORQ6R327 1708 aa20.99■□□□□ 0.95
SHMT2-211ENST00000554310 AKNAQ7Z591 1439 aa20.99■□□□□ 0.95
SHMT2-211ENST00000554310 DENND4BO75064 1496 aaPredicted RBP20.97■□□□□ 0.95
SHMT2-211ENST00000554310 PREX2Q70Z35 1606 aa20.96■□□□□ 0.95
SHMT2-211ENST00000554310 ADGRL1O94910 1474 aa20.94■□□□□ 0.94
SHMT2-211ENST00000554310 ARHGAP5Q13017 1502 aa20.94■□□□□ 0.94
SHMT2-211ENST00000554310 ZMYM4Q5VZL5 1548 aa20.94■□□□□ 0.94
SHMT2-211ENST00000554310 LOC105371045A0A1W2PR82 267 aa20.92■□□□□ 0.94
SHMT2-211ENST00000554310 RAPGEF3O95398 923 aa20.92■□□□□ 0.94
SHMT2-211ENST00000554310 ARHGEF40Q8TER5 1519 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms