RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 NISCHQ9Y2I1 1504 aa32.1■■■□□ 2.73
SHMT2-211ENST00000554310 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
SHMT2-211ENST00000554310 ABCC9O60706 1549 aa28.09■■■□□ 2.09
SHMT2-211ENST00000554310 RB1CC1Q8TDY2 1594 aa27.04■■□□□ 1.92
SHMT2-211ENST00000554310 NACADO15069 1562 aa26.97■■□□□ 1.91
SHMT2-211ENST00000554310 MYO15BQ96JP2 1530 aa26.8■■□□□ 1.88
SHMT2-211ENST00000554310 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
SHMT2-211ENST00000554310 DCAF8L2P0C7V8 631 aa26.71■■□□□ 1.87
SHMT2-211ENST00000554310 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
SHMT2-211ENST00000554310 UNC13AQ9UPW8 1703 aa26.44■■□□□ 1.82
SHMT2-211ENST00000554310 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.79
SHMT2-211ENST00000554310 PABPN1Q86U42 306 aaKnown RBP eCLIP26.14■■□□□ 1.78
SHMT2-211ENST00000554310 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
SHMT2-211ENST00000554310 SHROOM4Q9ULL8 1493 aa26.02■■□□□ 1.76
SHMT2-211ENST00000554310 DNAJC5BQ9UF47 199 aa25.82■■□□□ 1.72
SHMT2-211ENST00000554310 EIF4G1Q04637 1599 aaKnown RBP25.53■■□□□ 1.68
SHMT2-211ENST00000554310 CC2D2AQ9P2K1 1620 aa25.45■■□□□ 1.67
SHMT2-211ENST00000554310 CECR2Q9BXF3 1484 aa25.28■■□□□ 1.64
SHMT2-211ENST00000554310 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
SHMT2-211ENST00000554310 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
SHMT2-211ENST00000554310 SMARCA2P51531 1590 aa24.85■■□□□ 1.57
SHMT2-211ENST00000554310 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
SHMT2-211ENST00000554310 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.56
SHMT2-211ENST00000554310 HMGXB3Q12766 1538 aa24.78■■□□□ 1.56
SHMT2-211ENST00000554310 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
SHMT2-211ENST00000554310 MROH2BQ7Z745 1585 aa24.71■■□□□ 1.55
SHMT2-211ENST00000554310 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.54
SHMT2-211ENST00000554310 WIZO95785 1651 aa24.45■■□□□ 1.5
SHMT2-211ENST00000554310 RSF1Q96T23 1441 aaPredicted RBP24.36■■□□□ 1.49
SHMT2-211ENST00000554310 ERCC6Q03468 1493 aa24.26■■□□□ 1.47
SHMT2-211ENST00000554310 LAMC3Q9Y6N6 1575 aa24.26■■□□□ 1.47
SHMT2-211ENST00000554310 NESP48681 1621 aa24.26■■□□□ 1.47
SHMT2-211ENST00000554310 TOP2AP11388 1531 aaKnown RBP24.24■■□□□ 1.47
SHMT2-211ENST00000554310 CUX2O14529 1486 aa24.1■■□□□ 1.45
SHMT2-211ENST00000554310 CADPSQ9ULU8 1353 aa24.09■■□□□ 1.45
SHMT2-211ENST00000554310 PDS5BQ9NTI5 1447 aa24.06■■□□□ 1.44
SHMT2-211ENST00000554310 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
SHMT2-211ENST00000554310 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
SHMT2-211ENST00000554310 CFTRP13569 1480 aa23.95■■□□□ 1.42
SHMT2-211ENST00000554310 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
SHMT2-211ENST00000554310 PRDM2Q13029 1718 aa23.86■■□□□ 1.41
SHMT2-211ENST00000554310 MRC2Q9UBG0 1479 aa23.85■■□□□ 1.41
SHMT2-211ENST00000554310 CEP164Q9UPV0 1460 aa23.85■■□□□ 1.41
SHMT2-211ENST00000554310 FANCD2Q9BXW9 1451 aa23.83■■□□□ 1.41
SHMT2-211ENST00000554310 WDR62O43379 1518 aa23.8■■□□□ 1.4
SHMT2-211ENST00000554310 URB2Q14146 1524 aaKnown RBP23.61■■□□□ 1.37
SHMT2-211ENST00000554310 DNAJC5Q9H3Z4 198 aa23.61■■□□□ 1.37
SHMT2-211ENST00000554310 SUPT5HO00267 1087 aaKnown RBP23.53■■□□□ 1.36
SHMT2-211ENST00000554310 ABCC8Q09428 1581 aa23.46■■□□□ 1.35
SHMT2-211ENST00000554310 TOPBP1Q92547 1522 aa23.45■■□□□ 1.34
SHMT2-211ENST00000554310 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
SHMT2-211ENST00000554310 IFT140Q96RY7 1462 aa23.36■■□□□ 1.33
SHMT2-211ENST00000554310 POLA1P09884 1462 aaPredicted RBP23.24■■□□□ 1.31
SHMT2-211ENST00000554310 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
SHMT2-211ENST00000554310 CUX1P39880 1505 aa23.21■■□□□ 1.31
SHMT2-211ENST00000554310 ZNF608Q9ULD9 1512 aaPredicted RBP23.21■■□□□ 1.31
SHMT2-211ENST00000554310 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
SHMT2-211ENST00000554310 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
SHMT2-211ENST00000554310 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
SHMT2-211ENST00000554310 SOGA1O94964 1423 aa23.09■■□□□ 1.29
SHMT2-211ENST00000554310 RAD54L2Q9Y4B4 1467 aa23.09■■□□□ 1.29
SHMT2-211ENST00000554310 AQRO60306 1485 aaKnown RBP eCLIP23.04■■□□□ 1.285e-7■■■■□ 22.2
SHMT2-211ENST00000554310 BIVM-ERCC5R4GMW8 1640 aa23.03■■□□□ 1.28
SHMT2-211ENST00000554310 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
SHMT2-211ENST00000554310 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
SHMT2-211ENST00000554310 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
SHMT2-211ENST00000554310 OSCARQ8IYS5 282 aa22.96■■□□□ 1.27
SHMT2-211ENST00000554310 TDRD9Q8NDG6 1382 aaKnown RBP22.96■■□□□ 1.27
SHMT2-211ENST00000554310 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
SHMT2-211ENST00000554310 CHD1O14646 1710 aa22.93■■□□□ 1.26
SHMT2-211ENST00000554310 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
SHMT2-211ENST00000554310 GRIN2BQ13224 1484 aa22.9■■□□□ 1.26
SHMT2-211ENST00000554310 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
SHMT2-211ENST00000554310 SNAPC4Q5SXM2 1469 aa22.88■■□□□ 1.25
SHMT2-211ENST00000554310 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
SHMT2-211ENST00000554310 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
SHMT2-211ENST00000554310 SYNJ2O15056 1496 aa22.78■■□□□ 1.24
SHMT2-211ENST00000554310 FBLN2P98095 1184 aa22.74■■□□□ 1.23
SHMT2-211ENST00000554310 ADAMTS12P58397 1594 aa22.7■■□□□ 1.22
SHMT2-211ENST00000554310 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
SHMT2-211ENST00000554310 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
SHMT2-211ENST00000554310 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
SHMT2-211ENST00000554310 CHMP7Q8WUX9 453 aaPredicted RBP22.69■■□□□ 1.22
SHMT2-211ENST00000554310 ARHGEF11O15085 1522 aa22.68■■□□□ 1.22
SHMT2-211ENST00000554310 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
SHMT2-211ENST00000554310 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
SHMT2-211ENST00000554310 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
SHMT2-211ENST00000554310 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
SHMT2-211ENST00000554310 TRIM41Q8WV44 630 aa22.55■■□□□ 1.2
SHMT2-211ENST00000554310 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
SHMT2-211ENST00000554310 NUP160Q12769 1436 aa22.51■■□□□ 1.19
SHMT2-211ENST00000554310 CEP170Q5SW79 1584 aa22.5■■□□□ 1.19
SHMT2-211ENST00000554310 CUL7Q14999 1698 aa22.49■■□□□ 1.19
SHMT2-211ENST00000554310 ARAP1Q96P48 1450 aa22.47■■□□□ 1.19
SHMT2-211ENST00000554310 IGF1RP08069 1367 aa22.4■■□□□ 1.18
SHMT2-211ENST00000554310 SHROOM2Q13796 1616 aa22.4■■□□□ 1.18
SHMT2-211ENST00000554310 RUSC2Q8N2Y8 1516 aa22.37■■□□□ 1.17
SHMT2-211ENST00000554310 CYB5RLQ6IPT4 315 aa22.36■■□□□ 1.17
SHMT2-211ENST00000554310 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
SHMT2-211ENST00000554310 CARMIL1Q5VZK9 1371 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms