RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ABCC10Q5T3U5 1492 aa23.56■■□□□ 1.36
VPS29-211ENST00000553128 KDM4FA0A1W2PPD8 638 aa23.51■■□□□ 1.35
VPS29-211ENST00000553128 DIP2BQ9P265 1576 aa23.48■■□□□ 1.35
VPS29-211ENST00000553128 MAPKBP1O60336 1514 aa23.48■■□□□ 1.35
VPS29-211ENST00000553128 RUSC2Q8N2Y8 1516 aa23.47■■□□□ 1.35
VPS29-211ENST00000553128 SUPT5HO00267 1087 aaKnown RBP23.46■■□□□ 1.35
VPS29-211ENST00000553128 ADCY10Q96PN6 1610 aa23.45■■□□□ 1.34
VPS29-211ENST00000553128 NPM1P06748 294 aaKnown RBP eCLIP23.45■■□□□ 1.34
VPS29-211ENST00000553128 KDM6BO15054 1643 aa23.41■■□□□ 1.34
VPS29-211ENST00000553128 ILDR1Q86SU0 546 aaPredicted RBP23.35■■□□□ 1.33
VPS29-211ENST00000553128 TSPOAP1O95153 1857 aa23.34■■□□□ 1.33
VPS29-211ENST00000553128 KIAA0586Q9BVV6 1533 aa23.27■■□□□ 1.32
VPS29-211ENST00000553128 IGF1RP08069 1367 aa23.21■■□□□ 1.31
VPS29-211ENST00000553128 TTBK1Q5TCY1 1321 aaPredicted RBP23.2■■□□□ 1.3
VPS29-211ENST00000553128 PTPRGP23470 1445 aa23.17■■□□□ 1.3
VPS29-211ENST00000553128 PPRC1Q5VV67 1664 aaKnown RBP23.16■■□□□ 1.3
VPS29-211ENST00000553128 ADGRL1O94910 1474 aa23.14■■□□□ 1.29
VPS29-211ENST00000553128 ASXL2Q76L83 1435 aa23.13■■□□□ 1.29
VPS29-211ENST00000553128 ABCC2Q92887 1545 aa23.13■■□□□ 1.29
VPS29-211ENST00000553128 COL17A1Q9UMD9 1497 aaPredicted RBP23.1■■□□□ 1.29
VPS29-211ENST00000553128 CUL7Q14999 1698 aa23.09■■□□□ 1.29
VPS29-211ENST00000553128 GLI2P10070 1586 aa23.08■■□□□ 1.29
VPS29-211ENST00000553128 KIF27Q86VH2 1401 aa23.08■■□□□ 1.28
VPS29-211ENST00000553128 TNIKQ9UKE5 1360 aa23.07■■□□□ 1.28
VPS29-211ENST00000553128 PLB1Q6P1J6 1458 aa23.06■■□□□ 1.28
VPS29-211ENST00000553128 CARMIL2Q6F5E8 1435 aa23.02■■□□□ 1.28
VPS29-211ENST00000553128 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
VPS29-211ENST00000553128 UHRF1BP1LA0JNW5 1464 aa23■■□□□ 1.27
VPS29-211ENST00000553128 HECW2Q9P2P5 1572 aa23■■□□□ 1.27
VPS29-211ENST00000553128 UACAQ9BZF9 1416 aa22.98■■□□□ 1.27
VPS29-211ENST00000553128 EPRSP07814 1512 aaKnown RBP22.98■■□□□ 1.27
VPS29-211ENST00000553128 IQGAP2Q13576 1575 aa22.96■■□□□ 1.27
VPS29-211ENST00000553128 DISP1Q96F81 1524 aa22.95■■□□□ 1.26
VPS29-211ENST00000553128 MAP3K4Q9Y6R4 1608 aa22.95■■□□□ 1.26
VPS29-211ENST00000553128 KDM5BQ9UGL1 1544 aa22.92■■□□□ 1.26
VPS29-211ENST00000553128 ZCCHC11Q5TAX3 1644 aaKnown RBP22.88■■□□□ 1.25
VPS29-211ENST00000553128 TEX14Q8IWB6 1497 aa22.87■■□□□ 1.25
VPS29-211ENST00000553128 UGGT2Q9NYU1 1516 aa22.8■■□□□ 1.24
VPS29-211ENST00000553128 KIAA0556O60303 1618 aa22.79■■□□□ 1.24
VPS29-211ENST00000553128 WDR7Q9Y4E6 1490 aa22.78■■□□□ 1.24
VPS29-211ENST00000553128 CD109Q6YHK3 1445 aa22.72■■□□□ 1.23
VPS29-211ENST00000553128 RAPGEF2Q9Y4G8 1499 aa22.72■■□□□ 1.23
VPS29-211ENST00000553128 KCNH8Q96L42 1107 aa22.7■■□□□ 1.22
VPS29-211ENST00000553128 MAGI3Q5TCQ9 1506 aa22.7■■□□□ 1.22
VPS29-211ENST00000553128 KIF21BO75037 1637 aa22.67■■□□□ 1.22
VPS29-211ENST00000553128 CFAP43Q8NDM7 1665 aa22.65■■□□□ 1.22
VPS29-211ENST00000553128 FBXO41Q8TF61 875 aa22.64■■□□□ 1.21
VPS29-211ENST00000553128 ABCA8O94911 1581 aa22.61■■□□□ 1.21
VPS29-211ENST00000553128 ARAP3Q8WWN8 1544 aa22.54■■□□□ 1.2
VPS29-211ENST00000553128 ARID3CA6NKF2 412 aa22.53■■□□□ 1.2
VPS29-211ENST00000553128 PTPRMP28827 1452 aa22.53■■□□□ 1.2
VPS29-211ENST00000553128 CTTNBP2Q8WZ74 1663 aa22.52■■□□□ 1.2
VPS29-211ENST00000553128 GOLGA3Q08378 1498 aa22.52■■□□□ 1.2
VPS29-211ENST00000553128 ADAMTSL3P82987 1691 aa22.5■■□□□ 1.19
VPS29-211ENST00000553128 RAPGEF3O95398 923 aa22.47■■□□□ 1.19
VPS29-211ENST00000553128 ATP10BO94823 1461 aa22.45■■□□□ 1.18
VPS29-211ENST00000553128 P3H3Q8IVL6 736 aa22.41■■□□□ 1.18
VPS29-211ENST00000553128 ABCA9Q8IUA7 1624 aa22.4■■□□□ 1.18
VPS29-211ENST00000553128 LMTK3Q96Q04 1460 aa22.4■■□□□ 1.18
VPS29-211ENST00000553128 MADDQ8WXG6 1647 aa22.39■■□□□ 1.18
VPS29-211ENST00000553128 PCF11O94913 1555 aaKnown RBP22.39■■□□□ 1.18
VPS29-211ENST00000553128 BCORL1Q5H9F3 1711 aa22.39■■□□□ 1.17
VPS29-211ENST00000553128 FRMPD1Q5SYB0 1578 aa22.38■■□□□ 1.17
VPS29-211ENST00000553128 PRXQ9BXM0 1461 aa22.37■■□□□ 1.17
VPS29-211ENST00000553128 PHLDB1Q86UU1 1377 aa22.36■■□□□ 1.17
VPS29-211ENST00000553128 ARID4BQ4LE39 1312 aaPredicted RBP22.35■■□□□ 1.17
VPS29-211ENST00000553128 NEO1Q92859 1461 aa22.33■■□□□ 1.16
VPS29-211ENST00000553128 HSPA2P54652 639 aa22.3■■□□□ 1.16
VPS29-211ENST00000553128 RIMS1Q86UR5 1692 aaKnown RBP22.28■■□□□ 1.16
VPS29-211ENST00000553128 PLPPR3Q6T4P5 718 aa22.26■■□□□ 1.15
VPS29-211ENST00000553128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.25■■□□□ 1.15
VPS29-211ENST00000553128 HNRNPUL2Q1KMD3 747 aaKnown RBP22.25■■□□□ 1.15
VPS29-211ENST00000553128 ARHGEF40Q8TER5 1519 aa22.25■■□□□ 1.15
VPS29-211ENST00000553128 RAPGEF6Q8TEU7 1601 aa22.24■■□□□ 1.15
VPS29-211ENST00000553128 SAMD9Q5K651 1589 aa22.22■■□□□ 1.15
VPS29-211ENST00000553128 FAM9AQ8IZU1 332 aaPredicted RBP22.22■■□□□ 1.15
VPS29-211ENST00000553128 NUP153P49790 1475 aaKnown RBP22.21■■□□□ 1.15
VPS29-211ENST00000553128 SIGLEC1Q9BZZ2 1709 aa22.2■■□□□ 1.14
VPS29-211ENST00000553128 DENND4BO75064 1496 aaPredicted RBP22.19■■□□□ 1.14
VPS29-211ENST00000553128 RICTORQ6R327 1708 aa22.19■■□□□ 1.14
VPS29-211ENST00000553128 CERKQ8TCT0 537 aa22.17■■□□□ 1.14
VPS29-211ENST00000553128 AKNAQ7Z591 1439 aa22.16■■□□□ 1.14
VPS29-211ENST00000553128 FHOD3Q2V2M9 1422 aa22.15■■□□□ 1.14
VPS29-211ENST00000553128 YEATS2Q9ULM3 1422 aa22.14■■□□□ 1.14
VPS29-211ENST00000553128 FANCAO15360 1455 aa22.12■■□□□ 1.13
VPS29-211ENST00000553128 RANGAP1P46060 587 aaPredicted RBP22.12■■□□□ 1.13
VPS29-211ENST00000553128 MLECQ14165 292 aa22.11■■□□□ 1.13
VPS29-211ENST00000553128 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.1■■□□□ 1.13
VPS29-211ENST00000553128 POGZQ7Z3K3 1410 aa22.09■■□□□ 1.13
VPS29-211ENST00000553128 ILDR2Q71H61 639 aa22.09■■□□□ 1.13
VPS29-211ENST00000553128 ZMYM4Q5VZL5 1548 aa22.09■■□□□ 1.13
VPS29-211ENST00000553128 ZFYVE16Q7Z3T8 1539 aa22.09■■□□□ 1.13
VPS29-211ENST00000553128 PLEKHD1A6NEE1 506 aa22.08■■□□□ 1.13
VPS29-211ENST00000553128 TTC37Q6PGP7 1564 aa22.08■■□□□ 1.12
VPS29-211ENST00000553128 EFCAB5A4FU69 1503 aa22.05■■□□□ 1.12
VPS29-211ENST00000553128 CFAP74Q9C0B2 1584 aa22.04■■□□□ 1.12
VPS29-211ENST00000553128 CSRNP3Q8WYN3 585 aa22.04■■□□□ 1.12
VPS29-211ENST00000553128 HECW1Q76N89 1606 aa22.04■■□□□ 1.12
VPS29-211ENST00000553128 FER1L4A9Z1Z3 1794 aa22.03■■□□□ 1.12
VPS29-211ENST00000553128 DISP3Q9P2K9 1392 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms