RNA–Protein interactions for RNA: ENST00000550557.1

NR4A1-215, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 1 (best)

Gene NR4A1, Length 4,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-215ENST00000550557 CUX2O14529 1486 aa16.91■□□□□ 0.3
NR4A1-215ENST00000550557 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
NR4A1-215ENST00000550557 CADPSQ9ULU8 1353 aa16.89■□□□□ 0.29
NR4A1-215ENST00000550557 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
NR4A1-215ENST00000550557 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
NR4A1-215ENST00000550557 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
NR4A1-215ENST00000550557 EIF4G1Q04637 1599 aaKnown RBP16.84■□□□□ 0.29
NR4A1-215ENST00000550557 TONSLQ96HA7 1378 aa16.84■□□□□ 0.29
NR4A1-215ENST00000550557 MLECQ14165 292 aa16.82■□□□□ 0.28
NR4A1-215ENST00000550557 RRP7BPQ9NSQ0 103 aa16.82■□□□□ 0.28
NR4A1-215ENST00000550557 ANP32CO43423 234 aa16.81■□□□□ 0.28
NR4A1-215ENST00000550557 KDM2AQ9Y2K7 1162 aa16.81■□□□□ 0.28
NR4A1-215ENST00000550557 CARMIL2Q6F5E8 1435 aa16.8■□□□□ 0.28
NR4A1-215ENST00000550557 PLEKHG5O94827 1062 aa16.78■□□□□ 0.28
NR4A1-215ENST00000550557 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
NR4A1-215ENST00000550557 CLSPNQ9HAW4 1339 aa16.75■□□□□ 0.27
NR4A1-215ENST00000550557 A0A0G2JS52 829 aa16.75■□□□□ 0.27
NR4A1-215ENST00000550557 HAP1P54257 671 aaPredicted RBP16.75■□□□□ 0.27
NR4A1-215ENST00000550557 DAXXQ9UER7 740 aaPredicted RBP16.75■□□□□ 0.27
NR4A1-215ENST00000550557 ZBTB47Q9UFB7 747 aaPredicted RBP16.75■□□□□ 0.27
NR4A1-215ENST00000550557 CYB5RLQ6IPT4 315 aa16.74■□□□□ 0.27
NR4A1-215ENST00000550557 VPS8Q8N3P4 1428 aa16.74■□□□□ 0.27
NR4A1-215ENST00000550557 ZBTB7CA1YPR0 619 aa16.69■□□□□ 0.26
NR4A1-215ENST00000550557 RGL3Q3MIN7 710 aa16.69■□□□□ 0.26
NR4A1-215ENST00000550557 CCNB3Q8WWL7 1395 aa16.69■□□□□ 0.26
NR4A1-215ENST00000550557 RUSC2Q8N2Y8 1516 aa16.67■□□□□ 0.26
NR4A1-215ENST00000550557 CANXP27824 592 aaKnown RBP16.67■□□□□ 0.26
NR4A1-215ENST00000550557 JPH4Q96JJ6 628 aa16.63■□□□□ 0.25
NR4A1-215ENST00000550557 BCL11AQ9H165 835 aa16.63■□□□□ 0.25
NR4A1-215ENST00000550557 GGT6Q6P531 493 aa16.62■□□□□ 0.25
NR4A1-215ENST00000550557 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
NR4A1-215ENST00000550557 FANCD2Q9BXW9 1451 aa16.62■□□□□ 0.25
NR4A1-215ENST00000550557 EFCAB2Q5VUJ9 269 aa16.61■□□□□ 0.25
NR4A1-215ENST00000550557 HDGFP51858 240 aaKnown RBP16.6■□□□□ 0.25
NR4A1-215ENST00000550557 RAPGEF2Q9Y4G8 1499 aa16.59■□□□□ 0.25
NR4A1-215ENST00000550557 LMOD2Q6P5Q4 547 aa16.58■□□□□ 0.25
NR4A1-215ENST00000550557 NPM2Q86SE8 214 aaKnown RBP16.58■□□□□ 0.25
NR4A1-215ENST00000550557 KANK1Q14678 1352 aa16.57■□□□□ 0.24
NR4A1-215ENST00000550557 MIER1Q8N108 512 aa16.57■□□□□ 0.24
NR4A1-215ENST00000550557 TMC1Q8TDI8 760 aa16.56■□□□□ 0.24
NR4A1-215ENST00000550557 AEBP2Q6ZN18 517 aaPredicted RBP16.54■□□□□ 0.24
NR4A1-215ENST00000550557 POGKQ9P215 609 aa16.54■□□□□ 0.24
NR4A1-215ENST00000550557 NCAPD3P42695 1498 aa16.52■□□□□ 0.24
NR4A1-215ENST00000550557 RTL5Q5HYW3 569 aaPredicted RBP16.48■□□□□ 0.23
NR4A1-215ENST00000550557 KANK4Q5T7N3 995 aaPredicted RBP16.48■□□□□ 0.23
NR4A1-215ENST00000550557 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
NR4A1-215ENST00000550557 SYNJ1O43426 1573 aa16.44■□□□□ 0.22
NR4A1-215ENST00000550557 PTPRGP23470 1445 aa16.44■□□□□ 0.22
NR4A1-215ENST00000550557 KIF21BO75037 1637 aa16.43■□□□□ 0.22
NR4A1-215ENST00000550557 FMN1Q68DA7 1419 aa16.42■□□□□ 0.22
NR4A1-215ENST00000550557 DDX10Q13206 875 aaKnown RBP16.42■□□□□ 0.22
NR4A1-215ENST00000550557 WDR43Q15061 677 aaKnown RBP eCLIP16.41■□□□□ 0.22
NR4A1-215ENST00000550557 CDCA8Q53HL2 280 aa16.41■□□□□ 0.22
NR4A1-215ENST00000550557 EIF4G2P78344 907 aaKnown RBP eCLIP16.4■□□□□ 0.22
NR4A1-215ENST00000550557 FAM69CQ0P6D2 419 aa16.39■□□□□ 0.21
NR4A1-215ENST00000550557 KIF3BO15066 747 aa16.38■□□□□ 0.21
NR4A1-215ENST00000550557 SPAG9O60271 1321 aaKnown RBP16.37■□□□□ 0.21
NR4A1-215ENST00000550557 PPM1GO15355 546 aaPredicted RBP16.36■□□□□ 0.21
NR4A1-215ENST00000550557 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
NR4A1-215ENST00000550557 HMGXB3Q12766 1538 aa16.36■□□□□ 0.21
NR4A1-215ENST00000550557 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
NR4A1-215ENST00000550557 CARD11Q9BXL7 1154 aa16.36■□□□□ 0.21
NR4A1-215ENST00000550557 SALL2Q9Y467 1007 aaPredicted RBP16.36■□□□□ 0.21
NR4A1-215ENST00000550557 FKBP8Q14318 412 aa16.35■□□□□ 0.21
NR4A1-215ENST00000550557 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
NR4A1-215ENST00000550557 EID1Q9Y6B2 187 aa16.33■□□□□ 0.2
NR4A1-215ENST00000550557 CFTRP13569 1480 aa16.33■□□□□ 0.2
NR4A1-215ENST00000550557 FAM9BQ8IZU0 186 aa16.33■□□□□ 0.2
NR4A1-215ENST00000550557 ARHGAP35Q9NRY4 1499 aa16.33■□□□□ 0.2
NR4A1-215ENST00000550557 SETD5Q9C0A6 1442 aa16.32■□□□□ 0.2
NR4A1-215ENST00000550557 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
NR4A1-215ENST00000550557 GAPVD1Q14C86 1478 aa16.32■□□□□ 0.2
NR4A1-215ENST00000550557 WASHC2CQ9Y4E1 1318 aa16.32■□□□□ 0.2
NR4A1-215ENST00000550557 HNRNPMP52272 730 aaKnown RBP eCLIP16.31■□□□□ 0.2
NR4A1-215ENST00000550557 ERICH3Q5RHP9 1530 aa16.31■□□□□ 0.2
NR4A1-215ENST00000550557 ARXQ96QS3 562 aa16.31■□□□□ 0.2
NR4A1-215ENST00000550557 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
NR4A1-215ENST00000550557 IGF1RP08069 1367 aa16.3■□□□□ 0.2
NR4A1-215ENST00000550557 RSPH4AQ5TD94 716 aa16.3■□□□□ 0.2
NR4A1-215ENST00000550557 HIRIP3Q9BW71 556 aaPredicted RBP16.3■□□□□ 0.2
NR4A1-215ENST00000550557 CFAP53Q96M91 514 aa16.29■□□□□ 0.2
NR4A1-215ENST00000550557 CC2D2AQ9P2K1 1620 aa16.29■□□□□ 0.2
NR4A1-215ENST00000550557 FHOD3Q2V2M9 1422 aa16.29■□□□□ 0.2
NR4A1-215ENST00000550557 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.2
NR4A1-215ENST00000550557 KNSTRNQ9Y448 316 aa16.28■□□□□ 0.2
NR4A1-215ENST00000550557 SAFB2Q14151 953 aaKnown RBP eCLIP16.28■□□□□ 0.2
NR4A1-215ENST00000550557 DCAF11Q8TEB1 546 aa16.28■□□□□ 0.2
NR4A1-215ENST00000550557 STK26Q9P289 416 aa16.28■□□□□ 0.2
NR4A1-215ENST00000550557 SIN3AQ96ST3 1273 aa16.27■□□□□ 0.2
NR4A1-215ENST00000550557 TIMELESSQ9UNS1 1208 aa16.27■□□□□ 0.2
NR4A1-215ENST00000550557 RAD54L2Q9Y4B4 1467 aa16.27■□□□□ 0.19
NR4A1-215ENST00000550557 RAB3GAP2Q9H2M9 1393 aa16.26■□□□□ 0.19
NR4A1-215ENST00000550557 SRPK2P78362 688 aaKnown RBP16.26■□□□□ 0.19
NR4A1-215ENST00000550557 ANKRD30AQ9BXX3 1397 aa16.25■□□□□ 0.19
NR4A1-215ENST00000550557 PKD2Q13563 968 aa16.24■□□□□ 0.19
NR4A1-215ENST00000550557 PRXQ9BXM0 1461 aa16.24■□□□□ 0.19
NR4A1-215ENST00000550557 MRS2Q9HD23 443 aa16.22■□□□□ 0.19
NR4A1-215ENST00000550557 SOX12O15370 315 aa16.22■□□□□ 0.19
NR4A1-215ENST00000550557 NESP48681 1621 aa16.22■□□□□ 0.19
NR4A1-215ENST00000550557 CUX1P39880 1505 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms