RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 RAD54L2Q9Y4B4 1467 aa13.43□□□□□ -0.26
DEPDC4-207ENST00000549249 ABCB7O75027 752 aa13.41□□□□□ -0.26
DEPDC4-207ENST00000549249 TARBP1Q13395 1621 aaKnown RBP13.41□□□□□ -0.26
DEPDC4-207ENST00000549249 EEA1Q15075 1411 aa13.4□□□□□ -0.26
DEPDC4-207ENST00000549249 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
DEPDC4-207ENST00000549249 FAM9AQ8IZU1 332 aaPredicted RBP13.4□□□□□ -0.26
DEPDC4-207ENST00000549249 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
DEPDC4-207ENST00000549249 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
DEPDC4-207ENST00000549249 KIF27Q86VH2 1401 aa13.35□□□□□ -0.27
DEPDC4-207ENST00000549249 ABCA5Q8WWZ7 1642 aa13.35□□□□□ -0.27
DEPDC4-207ENST00000549249 IFT140Q96RY7 1462 aa13.33□□□□□ -0.28
DEPDC4-207ENST00000549249 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
DEPDC4-207ENST00000549249 KIF21BO75037 1637 aa13.3□□□□□ -0.28
DEPDC4-207ENST00000549249 LOC105371045A0A1W2PR82 267 aa13.29□□□□□ -0.28
DEPDC4-207ENST00000549249 ZBTB22O15209 634 aa13.29□□□□□ -0.28
DEPDC4-207ENST00000549249 ZNF608Q9ULD9 1512 aaPredicted RBP13.29□□□□□ -0.28
DEPDC4-207ENST00000549249 PBRM1Q86U86 1689 aa13.28□□□□□ -0.28
DEPDC4-207ENST00000549249 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
DEPDC4-207ENST00000549249 TDRD9Q8NDG6 1382 aaKnown RBP13.28□□□□□ -0.28
DEPDC4-207ENST00000549249 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
DEPDC4-207ENST00000549249 IGF1RP08069 1367 aa13.26□□□□□ -0.29
DEPDC4-207ENST00000549249 GAPVD1Q14C86 1478 aa13.26□□□□□ -0.29
DEPDC4-207ENST00000549249 PRXQ9BXM0 1461 aa13.26□□□□□ -0.29
DEPDC4-207ENST00000549249 ERICH3Q5RHP9 1530 aa13.24□□□□□ -0.29
DEPDC4-207ENST00000549249 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.29
DEPDC4-207ENST00000549249 CUL7Q14999 1698 aa13.23□□□□□ -0.29
DEPDC4-207ENST00000549249 GOLGA3Q08378 1498 aa13.23□□□□□ -0.29
DEPDC4-207ENST00000549249 RAPGEF2Q9Y4G8 1499 aa13.23□□□□□ -0.29
DEPDC4-207ENST00000549249 EHMT2Q96KQ7 1210 aa13.22□□□□□ -0.29
DEPDC4-207ENST00000549249 GRIN2BQ13224 1484 aa13.19□□□□□ -0.3
DEPDC4-207ENST00000549249 OSCARQ8IYS5 282 aa13.18□□□□□ -0.3
DEPDC4-207ENST00000549249 ADAMTS12P58397 1594 aa13.18□□□□□ -0.3
DEPDC4-207ENST00000549249 CARMIL1Q5VZK9 1371 aa13.18□□□□□ -0.3
DEPDC4-207ENST00000549249 SNAPC4Q5SXM2 1469 aa13.15□□□□□ -0.3
DEPDC4-207ENST00000549249 TNIKQ9UKE5 1360 aa13.14□□□□□ -0.31
DEPDC4-207ENST00000549249 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
DEPDC4-207ENST00000549249 FHAD1B1AJZ9 1412 aa13.12□□□□□ -0.31
DEPDC4-207ENST00000549249 MAGI1Q96QZ7 1491 aaPredicted RBP13.11□□□□□ -0.31
DEPDC4-207ENST00000549249 CTTNBP2Q8WZ74 1663 aa13.09□□□□□ -0.31
DEPDC4-207ENST00000549249 UBTFP17480 764 aaKnown RBP13.09□□□□□ -0.31
DEPDC4-207ENST00000549249 POLA2Q14181 598 aa13.09□□□□□ -0.31
DEPDC4-207ENST00000549249 CEP162Q5TB80 1403 aa13.06□□□□□ -0.32
DEPDC4-207ENST00000549249 SYNJ2O15056 1496 aa13.05□□□□□ -0.32
DEPDC4-207ENST00000549249 CHD1O14646 1710 aa13.04□□□□□ -0.32
DEPDC4-207ENST00000549249 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
DEPDC4-207ENST00000549249 CEP170Q5SW79 1584 aa13.01□□□□□ -0.33
DEPDC4-207ENST00000549249 CLIP1P30622 1438 aa12.98□□□□□ -0.33
DEPDC4-207ENST00000549249 NUP160Q12769 1436 aa12.96□□□□□ -0.33
DEPDC4-207ENST00000549249 IQGAP2Q13576 1575 aa12.96□□□□□ -0.33
DEPDC4-207ENST00000549249 CHMP7Q8WUX9 453 aaPredicted RBP12.96□□□□□ -0.33
DEPDC4-207ENST00000549249 ARHGAP35Q9NRY4 1499 aa12.96□□□□□ -0.34
DEPDC4-207ENST00000549249 ATF5Q9Y2D1 282 aaPredicted RBP12.95□□□□□ -0.34
DEPDC4-207ENST00000549249 ARAP1Q96P48 1450 aa12.94□□□□□ -0.34
DEPDC4-207ENST00000549249 KIAA0586Q9BVV6 1533 aa12.93□□□□□ -0.34
DEPDC4-207ENST00000549249 RANGAP1P46060 587 aaPredicted RBP12.93□□□□□ -0.34
DEPDC4-207ENST00000549249 FBLN2P98095 1184 aa12.93□□□□□ -0.34
DEPDC4-207ENST00000549249 SAMD9Q5K651 1589 aa12.93□□□□□ -0.34
DEPDC4-207ENST00000549249 EFCAB5A4FU69 1503 aa12.91□□□□□ -0.34
DEPDC4-207ENST00000549249 UGGT2Q9NYU1 1516 aa12.9□□□□□ -0.34
DEPDC4-207ENST00000549249 CHRDL2Q6WN34 429 aa12.89□□□□□ -0.35
DEPDC4-207ENST00000549249 ATXN8OSP0DMR3 200 aa12.87□□□□□ -0.35
DEPDC4-207ENST00000549249 CLASP1Q7Z460 1538 aa12.87□□□□□ -0.35
DEPDC4-207ENST00000549249 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
DEPDC4-207ENST00000549249 KIAA0556O60303 1618 aa12.86□□□□□ -0.35
DEPDC4-207ENST00000549249 FHOD3Q2V2M9 1422 aa12.86□□□□□ -0.35
DEPDC4-207ENST00000549249 SHROOM2Q13796 1616 aa12.85□□□□□ -0.35
DEPDC4-207ENST00000549249 DISP1Q96F81 1524 aa12.85□□□□□ -0.35
DEPDC4-207ENST00000549249 CYB5RLQ6IPT4 315 aa12.85□□□□□ -0.35
DEPDC4-207ENST00000549249 ZBTB12Q9Y330 459 aaPredicted RBP12.83□□□□□ -0.36
DEPDC4-207ENST00000549249 P3H3Q8IVL6 736 aa12.82□□□□□ -0.36
DEPDC4-207ENST00000549249 PCF11O94913 1555 aaKnown RBP12.81□□□□□ -0.36
DEPDC4-207ENST00000549249 ARHGEF11O15085 1522 aa12.79□□□□□ -0.36
DEPDC4-207ENST00000549249 JPH4Q96JJ6 628 aa12.79□□□□□ -0.36
DEPDC4-207ENST00000549249 AKT1S1Q96B36 256 aa12.77□□□□□ -0.37
DEPDC4-207ENST00000549249 ERCC6L2Q5T890 1561 aa12.77□□□□□ -0.37
DEPDC4-207ENST00000549249 RIMBP3CA6NJZ7 1639 aa12.77□□□□□ -0.37
DEPDC4-207ENST00000549249 RIMBP3BA6NNM3 1639 aa12.77□□□□□ -0.37
DEPDC4-207ENST00000549249 RIMBP3Q9UFD9 1639 aa12.77□□□□□ -0.37
DEPDC4-207ENST00000549249 LRRIQ1Q96JM4 1722 aa12.76□□□□□ -0.37
DEPDC4-207ENST00000549249 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
DEPDC4-207ENST00000549249 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
DEPDC4-207ENST00000549249 FYCO1Q9BQS8 1478 aa12.73□□□□□ -0.37
DEPDC4-207ENST00000549249 CARMIL2Q6F5E8 1435 aa12.73□□□□□ -0.37
DEPDC4-207ENST00000549249 CASKIN1Q8WXD9 1431 aa12.73□□□□□ -0.37
DEPDC4-207ENST00000549249 CFAP43Q8NDM7 1665 aa12.73□□□□□ -0.37
DEPDC4-207ENST00000549249 RAPGEF6Q8TEU7 1601 aa12.7□□□□□ -0.38
DEPDC4-207ENST00000549249 HECW1Q76N89 1606 aa12.7□□□□□ -0.38
DEPDC4-207ENST00000549249 TIAM1Q13009 1591 aa12.69□□□□□ -0.38
DEPDC4-207ENST00000549249 MAP3K1Q13233 1512 aa12.68□□□□□ -0.38
DEPDC4-207ENST00000549249 ABCA8O94911 1581 aa12.68□□□□□ -0.38
DEPDC4-207ENST00000549249 PPARGC1BQ86YN6 1023 aaKnown RBP12.67□□□□□ -0.38
DEPDC4-207ENST00000549249 PLB1Q6P1J6 1458 aa12.66□□□□□ -0.38
DEPDC4-207ENST00000549249 NUP153P49790 1475 aaKnown RBP12.65□□□□□ -0.38
DEPDC4-207ENST00000549249 TTBK1Q5TCY1 1321 aaPredicted RBP12.64□□□□□ -0.39
DEPDC4-207ENST00000549249 REM2Q8IYK8 340 aaPredicted RBP12.64□□□□□ -0.39
DEPDC4-207ENST00000549249 PTPRGP23470 1445 aa12.63□□□□□ -0.39
DEPDC4-207ENST00000549249 EPRSP07814 1512 aaKnown RBP12.63□□□□□ -0.39
DEPDC4-207ENST00000549249 CDK13Q14004 1512 aaKnown RBP12.63□□□□□ -0.39
DEPDC4-207ENST00000549249 KANK4Q5T7N3 995 aaPredicted RBP12.62□□□□□ -0.39
DEPDC4-207ENST00000549249 CCDC18Q5T9S5 1454 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms