RNA–Protein interactions for RNA: ENST00000547018.5

SCAF11-209, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 5

Gene SCAF11, Length 3,271 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-209ENST00000547018 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
SCAF11-209ENST00000547018 GAPVD1Q14C86 1478 aa18.69■□□□□ 0.58
SCAF11-209ENST00000547018 PRDM2Q13029 1718 aa18.68■□□□□ 0.58
SCAF11-209ENST00000547018 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
SCAF11-209ENST00000547018 CHIC2Q9UKJ5 165 aa18.66■□□□□ 0.58
SCAF11-209ENST00000547018 PHLDB1Q86UU1 1377 aa18.63■□□□□ 0.57
SCAF11-209ENST00000547018 ERCC6Q03468 1493 aa18.63■□□□□ 0.57
SCAF11-209ENST00000547018 LAMC3Q9Y6N6 1575 aa18.63■□□□□ 0.57
SCAF11-209ENST00000547018 MTUS2Q5JR59 1369 aa18.63■□□□□ 0.57
SCAF11-209ENST00000547018 SIN3AQ96ST3 1273 aa18.62■□□□□ 0.57
SCAF11-209ENST00000547018 KIF21AQ7Z4S6 1674 aa18.61■□□□□ 0.57
SCAF11-209ENST00000547018 HIRIP3Q9BW71 556 aaPredicted RBP18.59■□□□□ 0.57
SCAF11-209ENST00000547018 CHMP7Q8WUX9 453 aaPredicted RBP18.58■□□□□ 0.56
SCAF11-209ENST00000547018 FHAD1B1AJZ9 1412 aa18.58■□□□□ 0.56
SCAF11-209ENST00000547018 DHX57Q6P158 1386 aaKnown RBP18.57■□□□□ 0.56
SCAF11-209ENST00000547018 MIER1Q8N108 512 aa18.57■□□□□ 0.56
SCAF11-209ENST00000547018 RAB3GAP2Q9H2M9 1393 aa18.55■□□□□ 0.56
SCAF11-209ENST00000547018 ZNF608Q9ULD9 1512 aaPredicted RBP18.54■□□□□ 0.56
SCAF11-209ENST00000547018 RRP7BPQ9NSQ0 103 aa18.54■□□□□ 0.56
SCAF11-209ENST00000547018 LRRC9Q6ZRR7 1453 aa18.53■□□□□ 0.56
SCAF11-209ENST00000547018 PCF11O94913 1555 aaKnown RBP18.51■□□□□ 0.55
SCAF11-209ENST00000547018 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
SCAF11-209ENST00000547018 TIAM1Q13009 1591 aa18.49■□□□□ 0.55
SCAF11-209ENST00000547018 RRBP1Q9P2E9 1410 aaKnown RBP18.48■□□□□ 0.55
SCAF11-209ENST00000547018 ZNF777Q9ULD5 760 aaPredicted RBP18.48■□□□□ 0.55
SCAF11-209ENST00000547018 SCAF1Q9H7N4 1312 aaKnown RBP18.46■□□□□ 0.55
SCAF11-209ENST00000547018 MRC2Q9UBG0 1479 aa18.44■□□□□ 0.54
SCAF11-209ENST00000547018 FMN1Q68DA7 1419 aa18.44■□□□□ 0.54
SCAF11-209ENST00000547018 SETD5Q9C0A6 1442 aa18.4■□□□□ 0.54
SCAF11-209ENST00000547018 CASKIN1Q8WXD9 1431 aa18.39■□□□□ 0.53
SCAF11-209ENST00000547018 CENPBP07199 599 aaPredicted RBP18.38■□□□□ 0.53
SCAF11-209ENST00000547018 CUL7Q14999 1698 aa18.37■□□□□ 0.53
SCAF11-209ENST00000547018 FOXD1Q16676 465 aa18.36■□□□□ 0.53
SCAF11-209ENST00000547018 ACIN1Q9UKV3 1341 aaKnown RBP18.35■□□□□ 0.53
SCAF11-209ENST00000547018 GTF3C3Q9Y5Q9 886 aa18.34■□□□□ 0.53
SCAF11-209ENST00000547018 ZNF644Q9H582 1327 aaPredicted RBP18.34■□□□□ 0.53
SCAF11-209ENST00000547018 ABCA5Q8WWZ7 1642 aa18.34■□□□□ 0.53
SCAF11-209ENST00000547018 GRIN2BQ13224 1484 aa18.33■□□□□ 0.53
SCAF11-209ENST00000547018 SNAPC4Q5SXM2 1469 aa18.33■□□□□ 0.52
SCAF11-209ENST00000547018 FYCO1Q9BQS8 1478 aa18.33■□□□□ 0.52
SCAF11-209ENST00000547018 TARBP1Q13395 1621 aaKnown RBP18.32■□□□□ 0.52
SCAF11-209ENST00000547018 DDX10Q13206 875 aaKnown RBP18.31■□□□□ 0.52
SCAF11-209ENST00000547018 CTTNBP2Q8WZ74 1663 aa18.3■□□□□ 0.52
SCAF11-209ENST00000547018 CDK13Q14004 1512 aaKnown RBP18.3■□□□□ 0.52
SCAF11-209ENST00000547018 FGD6Q6ZV73 1430 aa18.29■□□□□ 0.52
SCAF11-209ENST00000547018 JPH4Q96JJ6 628 aa18.29■□□□□ 0.52
SCAF11-209ENST00000547018 EFCAB5A4FU69 1503 aa18.29■□□□□ 0.52
SCAF11-209ENST00000547018 NCOA2Q15596 1464 aa18.28■□□□□ 0.52
SCAF11-209ENST00000547018 CNGB1Q14028 1251 aaPredicted RBP18.28■□□□□ 0.52
SCAF11-209ENST00000547018 WDR97A6NE52 1622 aa18.25■□□□□ 0.51
SCAF11-209ENST00000547018 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
SCAF11-209ENST00000547018 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
SCAF11-209ENST00000547018 CLSPNQ9HAW4 1339 aa18.24■□□□□ 0.51
SCAF11-209ENST00000547018 CDK11AQ9UQ88 783 aaPredicted RBP18.22■□□□□ 0.51
SCAF11-209ENST00000547018 IQGAP2Q13576 1575 aa18.21■□□□□ 0.51
SCAF11-209ENST00000547018 KCNH8Q96L42 1107 aa18.21■□□□□ 0.51
SCAF11-209ENST00000547018 TONSLQ96HA7 1378 aa18.2■□□□□ 0.5
SCAF11-209ENST00000547018 CFDP1Q9UEE9 299 aaPredicted RBP18.2■□□□□ 0.5
SCAF11-209ENST00000547018 ZNF326Q5BKZ1 582 aaKnown RBP18.19■□□□□ 0.5
SCAF11-209ENST00000547018 MYOM3Q5VTT5 1437 aa18.19■□□□□ 0.5
SCAF11-209ENST00000547018 PBRM1Q86U86 1689 aa18.19■□□□□ 0.5
SCAF11-209ENST00000547018 MAP3K1Q13233 1512 aa18.18■□□□□ 0.5
SCAF11-209ENST00000547018 ADAMTS12P58397 1594 aa18.16■□□□□ 0.5
SCAF11-209ENST00000547018 MAGI3Q5TCQ9 1506 aa18.16■□□□□ 0.5
SCAF11-209ENST00000547018 EPRSP07814 1512 aaKnown RBP18.15■□□□□ 0.5
SCAF11-209ENST00000547018 CFAP43Q8NDM7 1665 aa18.15■□□□□ 0.5
SCAF11-209ENST00000547018 POLR3GLQ9BT43 218 aa18.15■□□□□ 0.5
SCAF11-209ENST00000547018 GRIN2AQ12879 1464 aa18.15■□□□□ 0.5
SCAF11-209ENST00000547018 CCDC18Q5T9S5 1454 aa18.14■□□□□ 0.49
SCAF11-209ENST00000547018 PLB1Q6P1J6 1458 aa18.14■□□□□ 0.49
SCAF11-209ENST00000547018 PRG4Q92954 1404 aaPredicted RBP18.14■□□□□ 0.49
SCAF11-209ENST00000547018 MAPKBP1O60336 1514 aa18.13■□□□□ 0.49
SCAF11-209ENST00000547018 PLEKHD1A6NEE1 506 aa18.13■□□□□ 0.49
SCAF11-209ENST00000547018 EIF4G3O43432 1585 aaKnown RBP18.12■□□□□ 0.49
SCAF11-209ENST00000547018 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
SCAF11-209ENST00000547018 SAMD9Q5K651 1589 aa18.11■□□□□ 0.49
SCAF11-209ENST00000547018 THOC2Q8NI27 1593 aaKnown RBP18.11■□□□□ 0.49
SCAF11-209ENST00000547018 PPP1R15AO75807 674 aaPredicted RBP18.11■□□□□ 0.49
SCAF11-209ENST00000547018 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
SCAF11-209ENST00000547018 WDR62O43379 1518 aa18.1■□□□□ 0.49
SCAF11-209ENST00000547018 KIAA0586Q9BVV6 1533 aa18.1■□□□□ 0.49
SCAF11-209ENST00000547018 LRRIQ1Q96JM4 1722 aa18.09■□□□□ 0.49
SCAF11-209ENST00000547018 MPHOSPH9Q99550 1183 aa18.08■□□□□ 0.48
SCAF11-209ENST00000547018 NAIPQ13075 1403 aa18.06■□□□□ 0.48
SCAF11-209ENST00000547018 HNRNPMP52272 730 aaKnown RBP eCLIP18.05■□□□□ 0.48
SCAF11-209ENST00000547018 DISP1Q96F81 1524 aa18.05■□□□□ 0.48
SCAF11-209ENST00000547018 SUPT6HQ7KZ85 1726 aaKnown RBP18.04■□□□□ 0.48
SCAF11-209ENST00000547018 EHBP1L1Q8N3D4 1523 aa18.03■□□□□ 0.48
SCAF11-209ENST00000547018 CARMIL2Q6F5E8 1435 aa18.03■□□□□ 0.48
SCAF11-209ENST00000547018 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.02■□□□□ 0.483e-8■■■■□ 20.1
SCAF11-209ENST00000547018 SYNJ2O15056 1496 aa18.02■□□□□ 0.47
SCAF11-209ENST00000547018 HECW1Q76N89 1606 aa18.01■□□□□ 0.47
SCAF11-209ENST00000547018 PTPN23Q9H3S7 1636 aa18.01■□□□□ 0.47
SCAF11-209ENST00000547018 NUP153P49790 1475 aaKnown RBP18.01■□□□□ 0.47
SCAF11-209ENST00000547018 HFM1A2PYH4 1435 aa18■□□□□ 0.47
SCAF11-209ENST00000547018 MYT1LQ9UL68 1186 aa17.99■□□□□ 0.47
SCAF11-209ENST00000547018 L3MBTL2Q969R5 705 aa17.99■□□□□ 0.47
SCAF11-209ENST00000547018 UGGT2Q9NYU1 1516 aa17.97■□□□□ 0.47
SCAF11-209ENST00000547018 KDM2AQ9Y2K7 1162 aa17.97■□□□□ 0.47
SCAF11-209ENST00000547018 CEP170Q5SW79 1584 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms