RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 PRG4Q92954 1404 aaPredicted RBP34.29■■■■□ 3.08
CHD4-213ENST00000545584 RUSC2Q8N2Y8 1516 aa34.25■■■■□ 3.07
CHD4-213ENST00000545584 CARMIL1Q5VZK9 1371 aa34.17■■■■□ 3.06
CHD4-213ENST00000545584 KIAA0586Q9BVV6 1533 aa34.16■■■■□ 3.06
CHD4-213ENST00000545584 NPM1P06748 294 aaKnown RBP eCLIP33.93■■■■□ 3.02
CHD4-213ENST00000545584 RAPGEF2Q9Y4G8 1499 aa33.89■■■■□ 3.02
CHD4-213ENST00000545584 IQGAP2Q13576 1575 aa33.87■■■■□ 3.01
CHD4-213ENST00000545584 CARMIL2Q6F5E8 1435 aa33.87■■■■□ 3.01
CHD4-213ENST00000545584 PTPRGP23470 1445 aa33.81■■■■□ 3
CHD4-213ENST00000545584 ADCY10Q96PN6 1610 aa33.8■■■■□ 3
CHD4-213ENST00000545584 TNIKQ9UKE5 1360 aa33.78■■■■□ 3
CHD4-213ENST00000545584 TTBK1Q5TCY1 1321 aaPredicted RBP33.78■■■■□ 3
CHD4-213ENST00000545584 MAPKBP1O60336 1514 aa33.73■■■□□ 2.99
CHD4-213ENST00000545584 KIF13AQ9H1H9 1805 aa33.71■■■□□ 2.99
CHD4-213ENST00000545584 FAM69CQ0P6D2 419 aa33.68■■■□□ 2.98
CHD4-213ENST00000545584 ABCC10Q5T3U5 1492 aa33.68■■■□□ 2.98
CHD4-213ENST00000545584 UGGT2Q9NYU1 1516 aa33.65■■■□□ 2.98
CHD4-213ENST00000545584 DISP1Q96F81 1524 aa33.64■■■□□ 2.98
CHD4-213ENST00000545584 PRXQ9BXM0 1461 aa33.58■■■□□ 2.97
CHD4-213ENST00000545584 DIP2BQ9P265 1576 aa33.57■■■□□ 2.96
CHD4-213ENST00000545584 CTTNBP2Q8WZ74 1663 aa33.56■■■□□ 2.96
CHD4-213ENST00000545584 ABCC2Q92887 1545 aa33.56■■■□□ 2.96
CHD4-213ENST00000545584 UACAQ9BZF9 1416 aa33.55■■■□□ 2.96
CHD4-213ENST00000545584 KIAA0556O60303 1618 aa33.53■■■□□ 2.96
CHD4-213ENST00000545584 UHRF1BP1LA0JNW5 1464 aa33.53■■■□□ 2.96
CHD4-213ENST00000545584 GOLGA3Q08378 1498 aa33.47■■■□□ 2.95
CHD4-213ENST00000545584 CSRNP3Q8WYN3 585 aa33.46■■■□□ 2.95
CHD4-213ENST00000545584 PLB1Q6P1J6 1458 aa33.43■■■□□ 2.94
CHD4-213ENST00000545584 ASXL2Q76L83 1435 aa33.42■■■□□ 2.94
CHD4-213ENST00000545584 EEA1Q15075 1411 aa33.38■■■□□ 2.93
CHD4-213ENST00000545584 KDM5BQ9UGL1 1544 aa33.37■■■□□ 2.93
CHD4-213ENST00000545584 TSPOAP1O95153 1857 aa33.34■■■□□ 2.93
CHD4-213ENST00000545584 AEBP2Q6ZN18 517 aaPredicted RBP33.3■■■□□ 2.92
CHD4-213ENST00000545584 FAM9AQ8IZU1 332 aaPredicted RBP33.3■■■□□ 2.92
CHD4-213ENST00000545584 ZCCHC11Q5TAX3 1644 aaKnown RBP33.29■■■□□ 2.92
CHD4-213ENST00000545584 GLI2P10070 1586 aa33.28■■■□□ 2.92
CHD4-213ENST00000545584 KDM6BO15054 1643 aa33.24■■■□□ 2.91
CHD4-213ENST00000545584 EPRSP07814 1512 aaKnown RBP33.21■■■□□ 2.91
CHD4-213ENST00000545584 ABCA8O94911 1581 aa33.21■■■□□ 2.91
CHD4-213ENST00000545584 P3H3Q8IVL6 736 aa33.19■■■□□ 2.9
CHD4-213ENST00000545584 WDR7Q9Y4E6 1490 aa33.15■■■□□ 2.9
CHD4-213ENST00000545584 PPRC1Q5VV67 1664 aaKnown RBP33.1■■■□□ 2.89
CHD4-213ENST00000545584 MAP3K4Q9Y6R4 1608 aa33.09■■■□□ 2.89
CHD4-213ENST00000545584 SAMD9Q5K651 1589 aa33.09■■■□□ 2.89
CHD4-213ENST00000545584 CHIC1Q5VXU3 224 aa33.07■■■□□ 2.88
CHD4-213ENST00000545584 TEX14Q8IWB6 1497 aa33.05■■■□□ 2.88
CHD4-213ENST00000545584 RANGAP1P46060 587 aaPredicted RBP33.05■■■□□ 2.88
CHD4-213ENST00000545584 KIF21BO75037 1637 aa33.03■■■□□ 2.88
CHD4-213ENST00000545584 KCNH8Q96L42 1107 aa33.03■■■□□ 2.88
CHD4-213ENST00000545584 ARID3CA6NKF2 412 aa32.99■■■□□ 2.87
CHD4-213ENST00000545584 ATP10BO94823 1461 aa32.95■■■□□ 2.87
CHD4-213ENST00000545584 CD109Q6YHK3 1445 aa32.94■■■□□ 2.86
CHD4-213ENST00000545584 RAPGEF6Q8TEU7 1601 aa32.93■■■□□ 2.86
CHD4-213ENST00000545584 CFAP43Q8NDM7 1665 aa32.92■■■□□ 2.86
CHD4-213ENST00000545584 FHOD3Q2V2M9 1422 aa32.91■■■□□ 2.86
CHD4-213ENST00000545584 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.88■■■□□ 2.85
CHD4-213ENST00000545584 HNRNPUL2Q1KMD3 747 aaKnown RBP32.88■■■□□ 2.85
CHD4-213ENST00000545584 MAGI3Q5TCQ9 1506 aa32.87■■■□□ 2.85
CHD4-213ENST00000545584 UBTFP17480 764 aaKnown RBP32.87■■■□□ 2.85
CHD4-213ENST00000545584 EFCAB5A4FU69 1503 aa32.87■■■□□ 2.85
CHD4-213ENST00000545584 COL17A1Q9UMD9 1497 aaPredicted RBP32.86■■■□□ 2.85
CHD4-213ENST00000545584 EHMT2Q96KQ7 1210 aa32.85■■■□□ 2.85
CHD4-213ENST00000545584 NUP153P49790 1475 aaKnown RBP32.79■■■□□ 2.84
CHD4-213ENST00000545584 KDM4FA0A1W2PPD8 638 aa32.75■■■□□ 2.83
CHD4-213ENST00000545584 ABCA9Q8IUA7 1624 aa32.71■■■□□ 2.83
CHD4-213ENST00000545584 PLEKHD1A6NEE1 506 aa32.69■■■□□ 2.82
CHD4-213ENST00000545584 PHLDB1Q86UU1 1377 aa32.63■■■□□ 2.81
CHD4-213ENST00000545584 ARAP3Q8WWN8 1544 aa32.61■■■□□ 2.81
CHD4-213ENST00000545584 FMN1Q68DA7 1419 aa32.6■■■□□ 2.81
CHD4-213ENST00000545584 ADGRL1O94910 1474 aa32.58■■■□□ 2.81
CHD4-213ENST00000545584 ARHGAP35Q9NRY4 1499 aa32.58■■■□□ 2.81
CHD4-213ENST00000545584 ATP1B4Q9UN42 357 aaPredicted RBP32.56■■■□□ 2.8
CHD4-213ENST00000545584 NEO1Q92859 1461 aa32.54■■■□□ 2.8
CHD4-213ENST00000545584 CDK13Q14004 1512 aaKnown RBP32.5■■■□□ 2.79
CHD4-213ENST00000545584 HECW1Q76N89 1606 aa32.49■■■□□ 2.79
CHD4-213ENST00000545584 CDK11AQ9UQ88 783 aaPredicted RBP32.44■■■□□ 2.78
CHD4-213ENST00000545584 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.44■■■□□ 2.781e-12■□□□□ 11.3
CHD4-213ENST00000545584 RAPGEF3O95398 923 aa32.43■■■□□ 2.78
CHD4-213ENST00000545584 FANCAO15360 1455 aa32.38■■■□□ 2.77
CHD4-213ENST00000545584 TTC37Q6PGP7 1564 aa32.37■■■□□ 2.77
CHD4-213ENST00000545584 CFAP74Q9C0B2 1584 aa32.37■■■□□ 2.77
CHD4-213ENST00000545584 AKNAQ7Z591 1439 aa32.36■■■□□ 2.77
CHD4-213ENST00000545584 DENND4BO75064 1496 aaPredicted RBP32.33■■■□□ 2.77
CHD4-213ENST00000545584 FRMPD1Q5SYB0 1578 aa32.29■■■□□ 2.76
CHD4-213ENST00000545584 PLCH2O75038 1416 aa32.28■■■□□ 2.76
CHD4-213ENST00000545584 CLIP1P30622 1438 aa32.26■■■□□ 2.76
CHD4-213ENST00000545584 TROQ12816 1431 aaPredicted RBP32.26■■■□□ 2.76
CHD4-213ENST00000545584 CASKIN1Q8WXD9 1431 aa32.25■■■□□ 2.75
CHD4-213ENST00000545584 KIF14Q15058 1648 aa32.23■■■□□ 2.75
CHD4-213ENST00000545584 RICTORQ6R327 1708 aa32.23■■■□□ 2.75
CHD4-213ENST00000545584 PCF11O94913 1555 aaKnown RBP32.21■■■□□ 2.75
CHD4-213ENST00000545584 EFCAB2Q5VUJ9 269 aa32.21■■■□□ 2.75
CHD4-213ENST00000545584 CCDC18Q5T9S5 1454 aa32.21■■■□□ 2.75
CHD4-213ENST00000545584 LRRIQ1Q96JM4 1722 aa32.2■■■□□ 2.74
CHD4-213ENST00000545584 MYO5CQ9NQX4 1742 aa32.2■■■□□ 2.74
CHD4-213ENST00000545584 ARID4BQ4LE39 1312 aaPredicted RBP32.19■■■□□ 2.74
CHD4-213ENST00000545584 SCAPERQ9BY12 1400 aa32.17■■■□□ 2.74
CHD4-213ENST00000545584 ARHGEF40Q8TER5 1519 aa32.16■■■□□ 2.74
CHD4-213ENST00000545584 ZMYM4Q5VZL5 1548 aa32.13■■■□□ 2.73
CHD4-213ENST00000545584 FYCO1Q9BQS8 1478 aa32.13■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms