RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 NISCHQ9Y2I1 1504 aa49.12■■■■■ 5.45
CHD4-213ENST00000545584 CCDC180Q9P1Z9 1646 aa43.93■■■■■ 4.62
CHD4-213ENST00000545584 ABCC9O60706 1549 aa43.61■■■■■ 4.57
CHD4-213ENST00000545584 RB1CC1Q8TDY2 1594 aa41.69■■■■■ 4.26
CHD4-213ENST00000545584 NACADO15069 1562 aa41.48■■■■■ 4.23
CHD4-213ENST00000545584 DCAF8L2P0C7V8 631 aa41.42■■■■■ 4.22
CHD4-213ENST00000545584 MYO15BQ96JP2 1530 aa41.01■■■■■ 4.16
CHD4-213ENST00000545584 ZCCHC6Q5VYS8 1495 aaKnown RBP40.77■■■■■ 4.12
CHD4-213ENST00000545584 PABPN1Q86U42 306 aaKnown RBP eCLIP40.67■■■■■ 4.1
CHD4-213ENST00000545584 UNC13AQ9UPW8 1703 aa40.65■■■■■ 4.1
CHD4-213ENST00000545584 DCAF1Q9Y4B6 1507 aa40.6■■■■■ 4.09
CHD4-213ENST00000545584 DNAJC5BQ9UF47 199 aa40.55■■■■■ 4.08
CHD4-213ENST00000545584 BICRAQ9NZM4 1560 aa40.37■■■■■ 4.05
CHD4-213ENST00000545584 SCRIBQ14160 1630 aa40.05■■■■■ 4
CHD4-213ENST00000545584 SHROOM4Q9ULL8 1493 aa39.95■■■■□ 3.99
CHD4-213ENST00000545584 EIF4G1Q04637 1599 aaKnown RBP39.4■■■■□ 3.9
CHD4-213ENST00000545584 CC2D2AQ9P2K1 1620 aa39.4■■■■□ 3.9
CHD4-213ENST00000545584 CECR2Q9BXF3 1484 aa39.26■■■■□ 3.88
CHD4-213ENST00000545584 NCAPD3P42695 1498 aa38.28■■■■□ 3.72
CHD4-213ENST00000545584 SMARCA4P51532 1647 aa38.23■■■■□ 3.71
CHD4-213ENST00000545584 ATAD2BQ9ULI0 1458 aa38.2■■■■□ 3.71
CHD4-213ENST00000545584 SMARCA2P51531 1590 aa38.15■■■■□ 3.7
CHD4-213ENST00000545584 BAZ1AQ9NRL2 1556 aaPredicted RBP38.14■■■■□ 3.7
CHD4-213ENST00000545584 HMGXB3Q12766 1538 aa38.02■■■■□ 3.68
CHD4-213ENST00000545584 BAZ1BQ9UIG0 1483 aaKnown RBP37.88■■■■□ 3.65
CHD4-213ENST00000545584 PEG3Q9GZU2 1588 aa37.85■■■■□ 3.65
CHD4-213ENST00000545584 MROH2BQ7Z745 1585 aa37.83■■■■□ 3.65
CHD4-213ENST00000545584 ERCC6Q03468 1493 aa37.68■■■■□ 3.62
CHD4-213ENST00000545584 NESP48681 1621 aa37.53■■■■□ 3.6
CHD4-213ENST00000545584 CUX2O14529 1486 aa37.47■■■■□ 3.59
CHD4-213ENST00000545584 WIZO95785 1651 aa37.4■■■■□ 3.58
CHD4-213ENST00000545584 LAMC3Q9Y6N6 1575 aa37.37■■■■□ 3.57
CHD4-213ENST00000545584 RSF1Q96T23 1441 aaPredicted RBP37.19■■■■□ 3.54
CHD4-213ENST00000545584 PDS5BQ9NTI5 1447 aa37.19■■■■□ 3.54
CHD4-213ENST00000545584 CADPSQ9ULU8 1353 aa37.16■■■■□ 3.54
CHD4-213ENST00000545584 THOC2Q8NI27 1593 aaKnown RBP37.07■■■■□ 3.52
CHD4-213ENST00000545584 DNAJC5Q9H3Z4 198 aa37.06■■■■□ 3.52
CHD4-213ENST00000545584 KIF21AQ7Z4S6 1674 aa37.05■■■■□ 3.52
CHD4-213ENST00000545584 TOP2AP11388 1531 aaKnown RBP36.98■■■■□ 3.51
CHD4-213ENST00000545584 MRC2Q9UBG0 1479 aa36.81■■■■□ 3.48
CHD4-213ENST00000545584 CFTRP13569 1480 aa36.77■■■■□ 3.48
CHD4-213ENST00000545584 CEP164Q9UPV0 1460 aa36.75■■■■□ 3.47
CHD4-213ENST00000545584 FANCD2Q9BXW9 1451 aa36.72■■■■□ 3.47
CHD4-213ENST00000545584 WDR62O43379 1518 aa36.68■■■■□ 3.46
CHD4-213ENST00000545584 CCDC88BA6NC98 1476 aa36.55■■■■□ 3.44
CHD4-213ENST00000545584 PRDM2Q13029 1718 aa36.42■■■■□ 3.42
CHD4-213ENST00000545584 URB2Q14146 1524 aaKnown RBP36.35■■■■□ 3.41
CHD4-213ENST00000545584 ABCC8Q09428 1581 aa36.06■■■■□ 3.36
CHD4-213ENST00000545584 TOPBP1Q92547 1522 aa36.05■■■■□ 3.36
CHD4-213ENST00000545584 IFT140Q96RY7 1462 aa35.99■■■■□ 3.35
CHD4-213ENST00000545584 DNMBPQ6XZF7 1577 aa35.95■■■■□ 3.35
CHD4-213ENST00000545584 SUPT5HO00267 1087 aaKnown RBP35.88■■■■□ 3.33
CHD4-213ENST00000545584 OSCARQ8IYS5 282 aa35.87■■■■□ 3.33
CHD4-213ENST00000545584 ZNF608Q9ULD9 1512 aaPredicted RBP35.85■■■■□ 3.33
CHD4-213ENST00000545584 POLA1P09884 1462 aaPredicted RBP35.7■■■■□ 3.31
CHD4-213ENST00000545584 EIF4G3O43432 1585 aaKnown RBP35.68■■■■□ 3.3
CHD4-213ENST00000545584 TARBP1Q13395 1621 aaKnown RBP35.66■■■■□ 3.3
CHD4-213ENST00000545584 TRIM41Q8WV44 630 aa35.62■■■■□ 3.29
CHD4-213ENST00000545584 AQRO60306 1485 aaKnown RBP eCLIP35.6■■■■□ 3.299e-8■■■■■ 29.9
CHD4-213ENST00000545584 SOGA1O94964 1423 aa35.58■■■■□ 3.29
CHD4-213ENST00000545584 RAD54L2Q9Y4B4 1467 aa35.55■■■■□ 3.28
CHD4-213ENST00000545584 FGD5Q6ZNL6 1462 aa35.54■■■■□ 3.28
CHD4-213ENST00000545584 CUX1P39880 1505 aa35.53■■■■□ 3.28
CHD4-213ENST00000545584 TDRD9Q8NDG6 1382 aaKnown RBP35.45■■■■□ 3.27
CHD4-213ENST00000545584 WDR97A6NE52 1622 aa35.39■■■■□ 3.26
CHD4-213ENST00000545584 FBLN2P98095 1184 aa35.38■■■■□ 3.25
CHD4-213ENST00000545584 CHD1O14646 1710 aa35.35■■■■□ 3.25
CHD4-213ENST00000545584 RIMBP3CA6NJZ7 1639 aa35.28■■■■□ 3.24
CHD4-213ENST00000545584 RIMBP3BA6NNM3 1639 aa35.28■■■■□ 3.24
CHD4-213ENST00000545584 RIMBP3Q9UFD9 1639 aa35.28■■■■□ 3.24
CHD4-213ENST00000545584 SNAPC4Q5SXM2 1469 aa35.25■■■■□ 3.23
CHD4-213ENST00000545584 GRIN2BQ13224 1484 aa35.23■■■■□ 3.23
CHD4-213ENST00000545584 ARHGEF11O15085 1522 aa35.22■■■■□ 3.23
CHD4-213ENST00000545584 MAGI1Q96QZ7 1491 aaPredicted RBP35.2■■■■□ 3.23
CHD4-213ENST00000545584 CHMP7Q8WUX9 453 aaPredicted RBP35.17■■■■□ 3.22
CHD4-213ENST00000545584 ABCA10Q8WWZ4 1543 aa35.15■■■■□ 3.22
CHD4-213ENST00000545584 GAPVD1Q14C86 1478 aa35.15■■■■□ 3.22
CHD4-213ENST00000545584 WRNQ14191 1432 aaPredicted RBP eCLIP35.12■■■■□ 3.219e-6■■■■■ 50.1
CHD4-213ENST00000545584 SYNJ2O15056 1496 aa35.07■■■■□ 3.2
CHD4-213ENST00000545584 PBRM1Q86U86 1689 aa35.07■■■■□ 3.2
CHD4-213ENST00000545584 TOP2BQ02880 1626 aa35.06■■■■□ 3.2
CHD4-213ENST00000545584 BIVM-ERCC5R4GMW8 1640 aa35.06■■■■□ 3.2
CHD4-213ENST00000545584 ABCA5Q8WWZ7 1642 aa35.04■■■■□ 3.2
CHD4-213ENST00000545584 SYNJ1O43426 1573 aa35.02■■■■□ 3.2
CHD4-213ENST00000545584 CYB5RLQ6IPT4 315 aa34.99■■■■□ 3.19
CHD4-213ENST00000545584 CLASP1Q7Z460 1538 aa34.94■■■■□ 3.18
CHD4-213ENST00000545584 ARAP1Q96P48 1450 aa34.87■■■■□ 3.17
CHD4-213ENST00000545584 ADAMTS12P58397 1594 aa34.76■■■■□ 3.16
CHD4-213ENST00000545584 GRIN2AQ12879 1464 aa34.76■■■■□ 3.15
CHD4-213ENST00000545584 ERICH3Q5RHP9 1530 aa34.73■■■■□ 3.15
CHD4-213ENST00000545584 FHAD1B1AJZ9 1412 aa34.72■■■■□ 3.15
CHD4-213ENST00000545584 NUP160Q12769 1436 aa34.62■■■■□ 3.13
CHD4-213ENST00000545584 CEP170Q5SW79 1584 aa34.58■■■■□ 3.13
CHD4-213ENST00000545584 TRHP20396 242 aaPredicted RBP34.53■■■■□ 3.12
CHD4-213ENST00000545584 KIF27Q86VH2 1401 aa34.47■■■■□ 3.11
CHD4-213ENST00000545584 SHROOM2Q13796 1616 aa34.4■■■■□ 3.1
CHD4-213ENST00000545584 ERCC6L2Q5T890 1561 aa34.4■■■■□ 3.1
CHD4-213ENST00000545584 IGF1RP08069 1367 aa34.36■■■■□ 3.09
CHD4-213ENST00000545584 JPH4Q96JJ6 628 aa34.32■■■■□ 3.08
CHD4-213ENST00000545584 CUL7Q14999 1698 aa34.29■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms