RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
HDAC4-216ENST00000544989 KIAA0586Q9BVV6 1533 aa20.02■□□□□ 0.79
HDAC4-216ENST00000544989 RUSC2Q8N2Y8 1516 aa20.01■□□□□ 0.79
HDAC4-216ENST00000544989 PRG4Q92954 1404 aaPredicted RBP19.99■□□□□ 0.79
HDAC4-216ENST00000544989 RAPGEF2Q9Y4G8 1499 aa19.94■□□□□ 0.78
HDAC4-216ENST00000544989 ERCC6L2Q5T890 1561 aa19.94■□□□□ 0.78
HDAC4-216ENST00000544989 IQGAP2Q13576 1575 aa19.85■□□□□ 0.77
HDAC4-216ENST00000544989 CARMIL2Q6F5E8 1435 aa19.85■□□□□ 0.77
HDAC4-216ENST00000544989 EEA1Q15075 1411 aa19.84■□□□□ 0.77
HDAC4-216ENST00000544989 PRXQ9BXM0 1461 aa19.81■□□□□ 0.76
HDAC4-216ENST00000544989 KIF13AQ9H1H9 1805 aa19.79■□□□□ 0.76
HDAC4-216ENST00000544989 CSRNP3Q8WYN3 585 aa19.77■□□□□ 0.76
HDAC4-216ENST00000544989 TNIKQ9UKE5 1360 aa19.76■□□□□ 0.75
HDAC4-216ENST00000544989 NPM1P06748 294 aaKnown RBP eCLIP19.76■□□□□ 0.75
HDAC4-216ENST00000544989 PTPRGP23470 1445 aa19.76■□□□□ 0.75
HDAC4-216ENST00000544989 UGGT2Q9NYU1 1516 aa19.75■□□□□ 0.75
HDAC4-216ENST00000544989 CTTNBP2Q8WZ74 1663 aa19.7■□□□□ 0.74
HDAC4-216ENST00000544989 GOLGA3Q08378 1498 aa19.69■□□□□ 0.74
HDAC4-216ENST00000544989 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
HDAC4-216ENST00000544989 DISP1Q96F81 1524 aa19.69■□□□□ 0.74
HDAC4-216ENST00000544989 ADCY10Q96PN6 1610 aa19.65■□□□□ 0.74
HDAC4-216ENST00000544989 MAPKBP1O60336 1514 aa19.64■□□□□ 0.73
HDAC4-216ENST00000544989 KIAA0556O60303 1618 aa19.64■□□□□ 0.73
HDAC4-216ENST00000544989 UHRF1BP1LA0JNW5 1464 aa19.62■□□□□ 0.73
HDAC4-216ENST00000544989 FAM9AQ8IZU1 332 aaPredicted RBP19.62■□□□□ 0.73
HDAC4-216ENST00000544989 UACAQ9BZF9 1416 aa19.61■□□□□ 0.73
HDAC4-216ENST00000544989 TTBK1Q5TCY1 1321 aaPredicted RBP19.61■□□□□ 0.73
HDAC4-216ENST00000544989 ABCC2Q92887 1545 aa19.6■□□□□ 0.73
HDAC4-216ENST00000544989 ABCC10Q5T3U5 1492 aa19.59■□□□□ 0.73
HDAC4-216ENST00000544989 KIF21BO75037 1637 aa19.55■□□□□ 0.72
HDAC4-216ENST00000544989 FAM69CQ0P6D2 419 aa19.52■□□□□ 0.72
HDAC4-216ENST00000544989 PLB1Q6P1J6 1458 aa19.51■□□□□ 0.71
HDAC4-216ENST00000544989 DIP2BQ9P265 1576 aa19.51■□□□□ 0.71
HDAC4-216ENST00000544989 KDM5BQ9UGL1 1544 aa19.51■□□□□ 0.71
HDAC4-216ENST00000544989 KDM4FA0A1W2PPD8 638 aa19.5■□□□□ 0.71
HDAC4-216ENST00000544989 ASXL2Q76L83 1435 aa19.46■□□□□ 0.71
HDAC4-216ENST00000544989 SAMD9Q5K651 1589 aa19.45■□□□□ 0.7
HDAC4-216ENST00000544989 ABCA8O94911 1581 aa19.44■□□□□ 0.7
HDAC4-216ENST00000544989 UBTFP17480 764 aaKnown RBP19.42■□□□□ 0.7
HDAC4-216ENST00000544989 KDM6BO15054 1643 aa19.41■□□□□ 0.7
HDAC4-216ENST00000544989 EFCAB5A4FU69 1503 aa19.41■□□□□ 0.7
HDAC4-216ENST00000544989 ZCCHC11Q5TAX3 1644 aaKnown RBP19.4■□□□□ 0.7
HDAC4-216ENST00000544989 ILDR1Q86SU0 546 aaPredicted RBP19.4■□□□□ 0.7
HDAC4-216ENST00000544989 P3H3Q8IVL6 736 aa19.4■□□□□ 0.7
HDAC4-216ENST00000544989 GLI2P10070 1586 aa19.4■□□□□ 0.7
HDAC4-216ENST00000544989 WDR7Q9Y4E6 1490 aa19.36■□□□□ 0.69
HDAC4-216ENST00000544989 RANGAP1P46060 587 aaPredicted RBP19.35■□□□□ 0.69
HDAC4-216ENST00000544989 EPRSP07814 1512 aaKnown RBP19.35■□□□□ 0.69
HDAC4-216ENST00000544989 FHOD3Q2V2M9 1422 aa19.32■□□□□ 0.68
HDAC4-216ENST00000544989 RAPGEF6Q8TEU7 1601 aa19.31■□□□□ 0.68
HDAC4-216ENST00000544989 TSPOAP1O95153 1857 aa19.3■□□□□ 0.68
HDAC4-216ENST00000544989 EHMT2Q96KQ7 1210 aa19.28■□□□□ 0.68
HDAC4-216ENST00000544989 ATP10BO94823 1461 aa19.28■□□□□ 0.68
HDAC4-216ENST00000544989 TEX14Q8IWB6 1497 aa19.28■□□□□ 0.68
HDAC4-216ENST00000544989 FMN1Q68DA7 1419 aa19.25■□□□□ 0.67
HDAC4-216ENST00000544989 PPRC1Q5VV67 1664 aaKnown RBP19.25■□□□□ 0.67
HDAC4-216ENST00000544989 MAP3K4Q9Y6R4 1608 aa19.25■□□□□ 0.67
HDAC4-216ENST00000544989 NUP153P49790 1475 aaKnown RBP19.23■□□□□ 0.67
HDAC4-216ENST00000544989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.23■□□□□ 0.67
HDAC4-216ENST00000544989 HNRNPUL2Q1KMD3 747 aaKnown RBP19.23■□□□□ 0.67
HDAC4-216ENST00000544989 KCNH8Q96L42 1107 aa19.23■□□□□ 0.67
HDAC4-216ENST00000544989 ARID3CA6NKF2 412 aa19.21■□□□□ 0.67
HDAC4-216ENST00000544989 ARHGAP35Q9NRY4 1499 aa19.21■□□□□ 0.67
HDAC4-216ENST00000544989 CD109Q6YHK3 1445 aa19.2■□□□□ 0.66
HDAC4-216ENST00000544989 CFAP43Q8NDM7 1665 aa19.2■□□□□ 0.66
HDAC4-216ENST00000544989 PLEKHD1A6NEE1 506 aa19.18■□□□□ 0.66
HDAC4-216ENST00000544989 MAGI3Q5TCQ9 1506 aa19.18■□□□□ 0.66
HDAC4-216ENST00000544989 ADGRL1O94910 1474 aa19.17■□□□□ 0.66
HDAC4-216ENST00000544989 HECW1Q76N89 1606 aa19.13■□□□□ 0.65
HDAC4-216ENST00000544989 COL17A1Q9UMD9 1497 aaPredicted RBP19.12■□□□□ 0.65
HDAC4-216ENST00000544989 PHLDB1Q86UU1 1377 aa19.12■□□□□ 0.65
HDAC4-216ENST00000544989 CDK11AQ9UQ88 783 aaPredicted RBP19.12■□□□□ 0.65
HDAC4-216ENST00000544989 ABCA9Q8IUA7 1624 aa19.11■□□□□ 0.65
HDAC4-216ENST00000544989 HECW2Q9P2P5 1572 aa19.1■□□□□ 0.65
HDAC4-216ENST00000544989 CLIP1P30622 1438 aa19.08■□□□□ 0.65
HDAC4-216ENST00000544989 ATP1B4Q9UN42 357 aaPredicted RBP19.08■□□□□ 0.64
HDAC4-216ENST00000544989 CASKIN1Q8WXD9 1431 aa19.04■□□□□ 0.64
HDAC4-216ENST00000544989 CDK13Q14004 1512 aaKnown RBP19.04■□□□□ 0.64
HDAC4-216ENST00000544989 NEO1Q92859 1461 aa19.03■□□□□ 0.64
HDAC4-216ENST00000544989 CCDC18Q5T9S5 1454 aa19.03■□□□□ 0.64
HDAC4-216ENST00000544989 ARAP3Q8WWN8 1544 aa19.02■□□□□ 0.64
HDAC4-216ENST00000544989 FYCO1Q9BQS8 1478 aa19■□□□□ 0.63
HDAC4-216ENST00000544989 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.98■□□□□ 0.632e-6■■■■■ 38.2
HDAC4-216ENST00000544989 TROQ12816 1431 aaPredicted RBP18.97■□□□□ 0.63
HDAC4-216ENST00000544989 PCF11O94913 1555 aaKnown RBP18.96■□□□□ 0.63
HDAC4-216ENST00000544989 CFAP74Q9C0B2 1584 aa18.96■□□□□ 0.63
HDAC4-216ENST00000544989 CEP162Q5TB80 1403 aa18.94■□□□□ 0.62
HDAC4-216ENST00000544989 KIF14Q15058 1648 aa18.93■□□□□ 0.62
HDAC4-216ENST00000544989 FANCAO15360 1455 aa18.93■□□□□ 0.62
HDAC4-216ENST00000544989 TTC37Q6PGP7 1564 aa18.93■□□□□ 0.62
HDAC4-216ENST00000544989 PLCH2O75038 1416 aa18.92■□□□□ 0.62
HDAC4-216ENST00000544989 AKNAQ7Z591 1439 aa18.91■□□□□ 0.62
HDAC4-216ENST00000544989 FBXO41Q8TF61 875 aa18.89■□□□□ 0.61
HDAC4-216ENST00000544989 EFCAB2Q5VUJ9 269 aa18.88■□□□□ 0.61
HDAC4-216ENST00000544989 DENND4BO75064 1496 aaPredicted RBP18.88■□□□□ 0.61
HDAC4-216ENST00000544989 LRRIQ1Q96JM4 1722 aa18.88■□□□□ 0.61
HDAC4-216ENST00000544989 RAPGEF3O95398 923 aa18.86■□□□□ 0.61
HDAC4-216ENST00000544989 MYO5CQ9NQX4 1742 aa18.86■□□□□ 0.61
HDAC4-216ENST00000544989 LOC105371045A0A1W2PR82 267 aa18.82■□□□□ 0.6
HDAC4-216ENST00000544989 ARHGAP5Q13017 1502 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms