RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 GOLGA3Q08378 1498 aa19.23■□□□□ 0.67
SNHG1-221ENST00000544983 AEBP2Q6ZN18 517 aaPredicted RBP19.22■□□□□ 0.67
SNHG1-221ENST00000544983 JPH4Q96JJ6 628 aa19.22■□□□□ 0.67
SNHG1-221ENST00000544983 IQGAP2Q13576 1575 aa19.21■□□□□ 0.67
SNHG1-221ENST00000544983 SHROOM2Q13796 1616 aa19.2■□□□□ 0.66
SNHG1-221ENST00000544983 CTTNBP2Q8WZ74 1663 aa19.18■□□□□ 0.66
SNHG1-221ENST00000544983 UBTFP17480 764 aaKnown RBP19.16■□□□□ 0.66
SNHG1-221ENST00000544983 ARHGEF11O15085 1522 aa19.15■□□□□ 0.66
SNHG1-221ENST00000544983 UGGT2Q9NYU1 1516 aa19.14■□□□□ 0.65
SNHG1-221ENST00000544983 PRG4Q92954 1404 aaPredicted RBP19.13■□□□□ 0.65
SNHG1-221ENST00000544983 CARMIL2Q6F5E8 1435 aa19.12■□□□□ 0.65
SNHG1-221ENST00000544983 RIMBP3CA6NJZ7 1639 aa19.09■□□□□ 0.65
SNHG1-221ENST00000544983 RIMBP3BA6NNM3 1639 aa19.09■□□□□ 0.65
SNHG1-221ENST00000544983 RIMBP3Q9UFD9 1639 aa19.09■□□□□ 0.65
SNHG1-221ENST00000544983 TNIKQ9UKE5 1360 aa19.06■□□□□ 0.64
SNHG1-221ENST00000544983 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
SNHG1-221ENST00000544983 DISP1Q96F81 1524 aa19.03■□□□□ 0.64
SNHG1-221ENST00000544983 ERCC6L2Q5T890 1561 aa19.01■□□□□ 0.63
SNHG1-221ENST00000544983 TRHP20396 242 aaPredicted RBP19■□□□□ 0.63
SNHG1-221ENST00000544983 KIAA0556O60303 1618 aa19■□□□□ 0.63
SNHG1-221ENST00000544983 EFCAB5A4FU69 1503 aa19■□□□□ 0.63
SNHG1-221ENST00000544983 ARAP1Q96P48 1450 aa18.99■□□□□ 0.63
SNHG1-221ENST00000544983 SAMD9Q5K651 1589 aa18.98■□□□□ 0.63
SNHG1-221ENST00000544983 PTPRGP23470 1445 aa18.97■□□□□ 0.63
SNHG1-221ENST00000544983 CYB5RLQ6IPT4 315 aa18.96■□□□□ 0.63
SNHG1-221ENST00000544983 LOC105371045A0A1W2PR82 267 aa18.95■□□□□ 0.62
SNHG1-221ENST00000544983 RANGAP1P46060 587 aaPredicted RBP18.91■□□□□ 0.62
SNHG1-221ENST00000544983 CLIP1P30622 1438 aa18.89■□□□□ 0.61
SNHG1-221ENST00000544983 ARHGAP35Q9NRY4 1499 aa18.88■□□□□ 0.61
SNHG1-221ENST00000544983 P3H3Q8IVL6 736 aa18.87■□□□□ 0.61
SNHG1-221ENST00000544983 CEP162Q5TB80 1403 aa18.85■□□□□ 0.61
SNHG1-221ENST00000544983 UHRF1BP1LA0JNW5 1464 aa18.84■□□□□ 0.61
SNHG1-221ENST00000544983 FHOD3Q2V2M9 1422 aa18.84■□□□□ 0.61
SNHG1-221ENST00000544983 UACAQ9BZF9 1416 aa18.84■□□□□ 0.61
SNHG1-221ENST00000544983 FMN1Q68DA7 1419 aa18.83■□□□□ 0.61
SNHG1-221ENST00000544983 TTBK1Q5TCY1 1321 aaPredicted RBP18.82■□□□□ 0.6
SNHG1-221ENST00000544983 ABCC2Q92887 1545 aa18.79■□□□□ 0.6
SNHG1-221ENST00000544983 NPM1P06748 294 aaKnown RBP eCLIP18.79■□□□□ 0.6
SNHG1-221ENST00000544983 ABCA8O94911 1581 aa18.78■□□□□ 0.6
SNHG1-221ENST00000544983 ADCY10Q96PN6 1610 aa18.77■□□□□ 0.6
SNHG1-221ENST00000544983 PLB1Q6P1J6 1458 aa18.77■□□□□ 0.59
SNHG1-221ENST00000544983 RAPGEF6Q8TEU7 1601 aa18.73■□□□□ 0.59
SNHG1-221ENST00000544983 KDM5BQ9UGL1 1544 aa18.73■□□□□ 0.59
SNHG1-221ENST00000544983 CASKIN1Q8WXD9 1431 aa18.68■□□□□ 0.58
SNHG1-221ENST00000544983 HECW1Q76N89 1606 aa18.67■□□□□ 0.58
SNHG1-221ENST00000544983 NUP153P49790 1475 aaKnown RBP18.66■□□□□ 0.58
SNHG1-221ENST00000544983 FYCO1Q9BQS8 1478 aa18.66■□□□□ 0.58
SNHG1-221ENST00000544983 MAPKBP1O60336 1514 aa18.66■□□□□ 0.58
SNHG1-221ENST00000544983 VPS8Q8N3P4 1428 aa18.64■□□□□ 0.57
SNHG1-221ENST00000544983 ATP10BO94823 1461 aa18.64■□□□□ 0.57
SNHG1-221ENST00000544983 ZCCHC11Q5TAX3 1644 aaKnown RBP18.63■□□□□ 0.57
SNHG1-221ENST00000544983 ILDR1Q86SU0 546 aaPredicted RBP18.61■□□□□ 0.57
SNHG1-221ENST00000544983 ATP1B4Q9UN42 357 aaPredicted RBP18.61■□□□□ 0.57
SNHG1-221ENST00000544983 PCF11O94913 1555 aaKnown RBP18.6■□□□□ 0.57
SNHG1-221ENST00000544983 CCDC18Q5T9S5 1454 aa18.6■□□□□ 0.57
SNHG1-221ENST00000544983 CDK11AQ9UQ88 783 aaPredicted RBP18.6■□□□□ 0.57
SNHG1-221ENST00000544983 EPRSP07814 1512 aaKnown RBP18.59■□□□□ 0.57
SNHG1-221ENST00000544983 ASXL2Q76L83 1435 aa18.59■□□□□ 0.57
SNHG1-221ENST00000544983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.58■□□□□ 0.56
SNHG1-221ENST00000544983 HNRNPUL2Q1KMD3 747 aaKnown RBP18.58■□□□□ 0.56
SNHG1-221ENST00000544983 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
SNHG1-221ENST00000544983 WDR7Q9Y4E6 1490 aa18.56■□□□□ 0.56
SNHG1-221ENST00000544983 ARID3CA6NKF2 412 aa18.54■□□□□ 0.56
SNHG1-221ENST00000544983 ABCC10Q5T3U5 1492 aa18.53■□□□□ 0.56
SNHG1-221ENST00000544983 CDK13Q14004 1512 aaKnown RBP18.52■□□□□ 0.56
SNHG1-221ENST00000544983 MAP3K1Q13233 1512 aa18.49■□□□□ 0.55
SNHG1-221ENST00000544983 APLP2Q06481 763 aa18.48■□□□□ 0.55
SNHG1-221ENST00000544983 LRRIQ1Q96JM4 1722 aa18.48■□□□□ 0.55
SNHG1-221ENST00000544983 GLI2P10070 1586 aa18.47■□□□□ 0.55
SNHG1-221ENST00000544983 FAM69CQ0P6D2 419 aa18.47■□□□□ 0.55
SNHG1-221ENST00000544983 DIP2BQ9P265 1576 aa18.47■□□□□ 0.55
SNHG1-221ENST00000544983 TROQ12816 1431 aaPredicted RBP18.46■□□□□ 0.55
SNHG1-221ENST00000544983 KCNH8Q96L42 1107 aa18.45■□□□□ 0.54
SNHG1-221ENST00000544983 MTUS2Q5JR59 1369 aa18.42■□□□□ 0.54
SNHG1-221ENST00000544983 TIAM1Q13009 1591 aa18.42■□□□□ 0.54
SNHG1-221ENST00000544983 CFAP43Q8NDM7 1665 aa18.41■□□□□ 0.54
SNHG1-221ENST00000544983 KIF13AQ9H1H9 1805 aa18.41■□□□□ 0.54
SNHG1-221ENST00000544983 KIF14Q15058 1648 aa18.38■□□□□ 0.53
SNHG1-221ENST00000544983 EHBP1L1Q8N3D4 1523 aa18.38■□□□□ 0.53
SNHG1-221ENST00000544983 ABCA9Q8IUA7 1624 aa18.38■□□□□ 0.53
SNHG1-221ENST00000544983 MAGI3Q5TCQ9 1506 aa18.36■□□□□ 0.53
SNHG1-221ENST00000544983 CD109Q6YHK3 1445 aa18.36■□□□□ 0.53
SNHG1-221ENST00000544983 LRRC9Q6ZRR7 1453 aa18.36■□□□□ 0.53
SNHG1-221ENST00000544983 MAP3K4Q9Y6R4 1608 aa18.35■□□□□ 0.53
SNHG1-221ENST00000544983 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.33■□□□□ 0.53
SNHG1-221ENST00000544983 TEX14Q8IWB6 1497 aa18.33■□□□□ 0.52
SNHG1-221ENST00000544983 PHLDB1Q86UU1 1377 aa18.3■□□□□ 0.52
SNHG1-221ENST00000544983 ARAP3Q8WWN8 1544 aa18.3■□□□□ 0.52
SNHG1-221ENST00000544983 SUPT6HQ7KZ85 1726 aaKnown RBP18.29■□□□□ 0.52
SNHG1-221ENST00000544983 KANK4Q5T7N3 995 aaPredicted RBP18.29■□□□□ 0.52
SNHG1-221ENST00000544983 PLCH2O75038 1416 aa18.29■□□□□ 0.52
SNHG1-221ENST00000544983 TTC37Q6PGP7 1564 aa18.29■□□□□ 0.52
SNHG1-221ENST00000544983 CCNB3Q8WWL7 1395 aa18.27■□□□□ 0.51
SNHG1-221ENST00000544983 EFCAB2Q5VUJ9 269 aa18.25■□□□□ 0.51
SNHG1-221ENST00000544983 MYO5CQ9NQX4 1742 aa18.25■□□□□ 0.51
SNHG1-221ENST00000544983 NCOA2Q15596 1464 aa18.25■□□□□ 0.51
SNHG1-221ENST00000544983 NEO1Q92859 1461 aa18.25■□□□□ 0.51
SNHG1-221ENST00000544983 TSPOAP1O95153 1857 aa18.24■□□□□ 0.51
SNHG1-221ENST00000544983 CFAP74Q9C0B2 1584 aa18.24■□□□□ 0.51
SNHG1-221ENST00000544983 PPRC1Q5VV67 1664 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms