RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 CLASP1Q7Z460 1538 aa19.98■□□□□ 0.79
DDX55-210ENST00000543016 KIAA0586Q9BVV6 1533 aa19.98■□□□□ 0.79
DDX55-210ENST00000543016 CEP170Q5SW79 1584 aa19.98■□□□□ 0.79
DDX55-210ENST00000543016 GOLGA3Q08378 1498 aa19.92■□□□□ 0.78
DDX55-210ENST00000543016 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
DDX55-210ENST00000543016 IQGAP2Q13576 1575 aa19.86■□□□□ 0.77
DDX55-210ENST00000543016 UBTFP17480 764 aaKnown RBP19.85■□□□□ 0.77
DDX55-210ENST00000543016 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
DDX55-210ENST00000543016 CTTNBP2Q8WZ74 1663 aa19.81■□□□□ 0.76
DDX55-210ENST00000543016 UGGT2Q9NYU1 1516 aa19.8■□□□□ 0.76
DDX55-210ENST00000543016 PRG4Q92954 1404 aaPredicted RBP19.79■□□□□ 0.76
DDX55-210ENST00000543016 CARMIL2Q6F5E8 1435 aa19.78■□□□□ 0.76
DDX55-210ENST00000543016 ARHGEF11O15085 1522 aa19.78■□□□□ 0.76
DDX55-210ENST00000543016 TNIKQ9UKE5 1360 aa19.75■□□□□ 0.75
DDX55-210ENST00000543016 EHMT2Q96KQ7 1210 aa19.72■□□□□ 0.75
DDX55-210ENST00000543016 RIMBP3CA6NJZ7 1639 aa19.71■□□□□ 0.75
DDX55-210ENST00000543016 RIMBP3BA6NNM3 1639 aa19.71■□□□□ 0.75
DDX55-210ENST00000543016 RIMBP3Q9UFD9 1639 aa19.71■□□□□ 0.75
DDX55-210ENST00000543016 DISP1Q96F81 1524 aa19.69■□□□□ 0.74
DDX55-210ENST00000543016 EFCAB5A4FU69 1503 aa19.66■□□□□ 0.74
DDX55-210ENST00000543016 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
DDX55-210ENST00000543016 KIAA0556O60303 1618 aa19.65■□□□□ 0.74
DDX55-210ENST00000543016 LOC105371045A0A1W2PR82 267 aa19.64■□□□□ 0.73
DDX55-210ENST00000543016 PTPRGP23470 1445 aa19.64■□□□□ 0.73
DDX55-210ENST00000543016 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
DDX55-210ENST00000543016 SAMD9Q5K651 1589 aa19.62■□□□□ 0.73
DDX55-210ENST00000543016 CYB5RLQ6IPT4 315 aa19.61■□□□□ 0.73
DDX55-210ENST00000543016 RANGAP1P46060 587 aaPredicted RBP19.58■□□□□ 0.72
DDX55-210ENST00000543016 CLIP1P30622 1438 aa19.56■□□□□ 0.72
DDX55-210ENST00000543016 ARHGAP35Q9NRY4 1499 aa19.54■□□□□ 0.72
DDX55-210ENST00000543016 FOXD1Q16676 465 aa19.54■□□□□ 0.72
DDX55-210ENST00000543016 P3H3Q8IVL6 736 aa19.54■□□□□ 0.72
DDX55-210ENST00000543016 CEP162Q5TB80 1403 aa19.52■□□□□ 0.72
DDX55-210ENST00000543016 FHOD3Q2V2M9 1422 aa19.51■□□□□ 0.71
DDX55-210ENST00000543016 UACAQ9BZF9 1416 aa19.51■□□□□ 0.71
DDX55-210ENST00000543016 FMN1Q68DA7 1419 aa19.5■□□□□ 0.71
DDX55-210ENST00000543016 UHRF1BP1LA0JNW5 1464 aa19.49■□□□□ 0.71
DDX55-210ENST00000543016 TTBK1Q5TCY1 1321 aaPredicted RBP19.49■□□□□ 0.71
DDX55-210ENST00000543016 NPM1P06748 294 aaKnown RBP eCLIP19.45■□□□□ 0.7
DDX55-210ENST00000543016 ABCC2Q92887 1545 aa19.44■□□□□ 0.7
DDX55-210ENST00000543016 ABCA8O94911 1581 aa19.44■□□□□ 0.7
DDX55-210ENST00000543016 PLB1Q6P1J6 1458 aa19.42■□□□□ 0.7
DDX55-210ENST00000543016 ADCY10Q96PN6 1610 aa19.39■□□□□ 0.69
DDX55-210ENST00000543016 RAPGEF6Q8TEU7 1601 aa19.37■□□□□ 0.69
DDX55-210ENST00000543016 KDM5BQ9UGL1 1544 aa19.37■□□□□ 0.69
DDX55-210ENST00000543016 CASKIN1Q8WXD9 1431 aa19.35■□□□□ 0.69
DDX55-210ENST00000543016 NUP153P49790 1475 aaKnown RBP19.31■□□□□ 0.68
DDX55-210ENST00000543016 FYCO1Q9BQS8 1478 aa19.31■□□□□ 0.68
DDX55-210ENST00000543016 HECW1Q76N89 1606 aa19.3■□□□□ 0.68
DDX55-210ENST00000543016 VPS8Q8N3P4 1428 aa19.3■□□□□ 0.68
DDX55-210ENST00000543016 ATP10BO94823 1461 aa19.29■□□□□ 0.68
DDX55-210ENST00000543016 MAPKBP1O60336 1514 aa19.29■□□□□ 0.68
DDX55-210ENST00000543016 ATP1B4Q9UN42 357 aaPredicted RBP19.27■□□□□ 0.68
DDX55-210ENST00000543016 CDK11AQ9UQ88 783 aaPredicted RBP19.27■□□□□ 0.68
DDX55-210ENST00000543016 CCDC18Q5T9S5 1454 aa19.25■□□□□ 0.67
DDX55-210ENST00000543016 ZCCHC11Q5TAX3 1644 aaKnown RBP19.25■□□□□ 0.67
DDX55-210ENST00000543016 EPRSP07814 1512 aaKnown RBP19.25■□□□□ 0.67
DDX55-210ENST00000543016 PCF11O94913 1555 aaKnown RBP19.24■□□□□ 0.67
DDX55-210ENST00000543016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
DDX55-210ENST00000543016 HNRNPUL2Q1KMD3 747 aaKnown RBP19.24■□□□□ 0.67
DDX55-210ENST00000543016 PLEKHD1A6NEE1 506 aa19.23■□□□□ 0.67
DDX55-210ENST00000543016 ASXL2Q76L83 1435 aa19.23■□□□□ 0.67
DDX55-210ENST00000543016 ARID3CA6NKF2 412 aa19.2■□□□□ 0.66
DDX55-210ENST00000543016 WDR7Q9Y4E6 1490 aa19.19■□□□□ 0.66
DDX55-210ENST00000543016 ABCC10Q5T3U5 1492 aa19.16■□□□□ 0.66
DDX55-210ENST00000543016 MAP3K1Q13233 1512 aa19.15■□□□□ 0.66
DDX55-210ENST00000543016 CDK13Q14004 1512 aaKnown RBP19.15■□□□□ 0.66
DDX55-210ENST00000543016 APLP2Q06481 763 aa19.15■□□□□ 0.66
DDX55-210ENST00000543016 TROQ12816 1431 aaPredicted RBP19.11■□□□□ 0.65
DDX55-210ENST00000543016 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
DDX55-210ENST00000543016 FAM69CQ0P6D2 419 aa19.11■□□□□ 0.65
DDX55-210ENST00000543016 GLI2P10070 1586 aa19.1■□□□□ 0.65
DDX55-210ENST00000543016 KCNH8Q96L42 1107 aa19.09■□□□□ 0.65
DDX55-210ENST00000543016 LRRIQ1Q96JM4 1722 aa19.08■□□□□ 0.65
DDX55-210ENST00000543016 DIP2BQ9P265 1576 aa19.08■□□□□ 0.65
DDX55-210ENST00000543016 MTUS2Q5JR59 1369 aa19.06■□□□□ 0.64
DDX55-210ENST00000543016 TIAM1Q13009 1591 aa19.06■□□□□ 0.64
DDX55-210ENST00000543016 PLPPR3Q6T4P5 718 aa19.05■□□□□ 0.64
DDX55-210ENST00000543016 CFAP43Q8NDM7 1665 aa19.04■□□□□ 0.64
DDX55-210ENST00000543016 EHBP1L1Q8N3D4 1523 aa19.02■□□□□ 0.64
DDX55-210ENST00000543016 LRRC9Q6ZRR7 1453 aa19.01■□□□□ 0.63
DDX55-210ENST00000543016 KIF14Q15058 1648 aa19■□□□□ 0.63
DDX55-210ENST00000543016 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
DDX55-210ENST00000543016 ABCA9Q8IUA7 1624 aa19■□□□□ 0.63
DDX55-210ENST00000543016 MAGI3Q5TCQ9 1506 aa19■□□□□ 0.63
DDX55-210ENST00000543016 CD109Q6YHK3 1445 aa19■□□□□ 0.63
DDX55-210ENST00000543016 MAP3K4Q9Y6R4 1608 aa18.96■□□□□ 0.63
DDX55-210ENST00000543016 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.96■□□□□ 0.63
DDX55-210ENST00000543016 KANK4Q5T7N3 995 aaPredicted RBP18.95■□□□□ 0.62
DDX55-210ENST00000543016 TEX14Q8IWB6 1497 aa18.95■□□□□ 0.62
DDX55-210ENST00000543016 PHLDB1Q86UU1 1377 aa18.94■□□□□ 0.62
DDX55-210ENST00000543016 PLCH2O75038 1416 aa18.93■□□□□ 0.62
DDX55-210ENST00000543016 ARAP3Q8WWN8 1544 aa18.93■□□□□ 0.62
DDX55-210ENST00000543016 CCNB3Q8WWL7 1395 aa18.91■□□□□ 0.62
DDX55-210ENST00000543016 SUPT6HQ7KZ85 1726 aaKnown RBP18.91■□□□□ 0.62
DDX55-210ENST00000543016 EFCAB2Q5VUJ9 269 aa18.9■□□□□ 0.62
DDX55-210ENST00000543016 NCOA2Q15596 1464 aa18.9■□□□□ 0.62
DDX55-210ENST00000543016 TTC37Q6PGP7 1564 aa18.89■□□□□ 0.62
DDX55-210ENST00000543016 NEO1Q92859 1461 aa18.88■□□□□ 0.61
DDX55-210ENST00000543016 GPATCH8Q9UKJ3 1502 aaKnown RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms