RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
DDX55-210ENST00000543016 CCDC180Q9P1Z9 1646 aa25.56■■□□□ 1.68
DDX55-210ENST00000543016 AEBP2Q6ZN18 517 aaPredicted RBP24.74■■□□□ 1.55
DDX55-210ENST00000543016 ABCC9O60706 1549 aa24.66■■□□□ 1.54
DDX55-210ENST00000543016 ZCCHC6Q5VYS8 1495 aaKnown RBP24.14■■□□□ 1.46
DDX55-210ENST00000543016 MYO15BQ96JP2 1530 aa24.03■■□□□ 1.44
DDX55-210ENST00000543016 NACADO15069 1562 aa24.02■■□□□ 1.44
DDX55-210ENST00000543016 DCAF1Q9Y4B6 1507 aa24.01■■□□□ 1.43
DDX55-210ENST00000543016 DCAF8L2P0C7V8 631 aa24■■□□□ 1.43
DDX55-210ENST00000543016 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
DDX55-210ENST00000543016 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
DDX55-210ENST00000543016 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
DDX55-210ENST00000543016 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
DDX55-210ENST00000543016 BICRAQ9NZM4 1560 aa23.12■■□□□ 1.29
DDX55-210ENST00000543016 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.29
DDX55-210ENST00000543016 SHROOM4Q9ULL8 1493 aa23.08■■□□□ 1.29
DDX55-210ENST00000543016 EIF4G1Q04637 1599 aaKnown RBP22.52■■□□□ 1.2
DDX55-210ENST00000543016 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
DDX55-210ENST00000543016 BAZ1AQ9NRL2 1556 aaPredicted RBP22.41■■□□□ 1.18
DDX55-210ENST00000543016 DNAJC5BQ9UF47 199 aa22.34■■□□□ 1.17
DDX55-210ENST00000543016 SMARCA4P51532 1647 aa22.33■■□□□ 1.17
DDX55-210ENST00000543016 CC2D2AQ9P2K1 1620 aa22.32■■□□□ 1.16
DDX55-210ENST00000543016 MROH2BQ7Z745 1585 aa22.23■■□□□ 1.15
DDX55-210ENST00000543016 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
DDX55-210ENST00000543016 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
DDX55-210ENST00000543016 ATAD2BQ9ULI0 1458 aa22.17■■□□□ 1.14
DDX55-210ENST00000543016 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
DDX55-210ENST00000543016 RSF1Q96T23 1441 aaPredicted RBP22.14■■□□□ 1.14
DDX55-210ENST00000543016 HMGXB3Q12766 1538 aa22.05■■□□□ 1.12
DDX55-210ENST00000543016 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
DDX55-210ENST00000543016 WIZO95785 1651 aa21.97■■□□□ 1.11
DDX55-210ENST00000543016 TOP2AP11388 1531 aaKnown RBP21.84■■□□□ 1.09
DDX55-210ENST00000543016 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
DDX55-210ENST00000543016 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
DDX55-210ENST00000543016 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
DDX55-210ENST00000543016 LAMC3Q9Y6N6 1575 aa21.49■■□□□ 1.03
DDX55-210ENST00000543016 CFTRP13569 1480 aa21.45■■□□□ 1.03
DDX55-210ENST00000543016 NESP48681 1621 aa21.4■■□□□ 1.02
DDX55-210ENST00000543016 PDS5BQ9NTI5 1447 aa21.39■■□□□ 1.02
DDX55-210ENST00000543016 ERCC6Q03468 1493 aa21.28■■□□□ 1
DDX55-210ENST00000543016 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
DDX55-210ENST00000543016 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
DDX55-210ENST00000543016 CEP164Q9UPV0 1460 aa21.19■□□□□ 0.98
DDX55-210ENST00000543016 KIF21AQ7Z4S6 1674 aa21.13■□□□□ 0.97
DDX55-210ENST00000543016 MRC2Q9UBG0 1479 aa21.1■□□□□ 0.97
DDX55-210ENST00000543016 ABCC8Q09428 1581 aa21.05■□□□□ 0.96
DDX55-210ENST00000543016 THOC2Q8NI27 1593 aaKnown RBP21.02■□□□□ 0.96
DDX55-210ENST00000543016 WDR62O43379 1518 aa21■□□□□ 0.95
DDX55-210ENST00000543016 CUX2O14529 1486 aa21■□□□□ 0.95
DDX55-210ENST00000543016 URB2Q14146 1524 aaKnown RBP20.96■□□□□ 0.95
DDX55-210ENST00000543016 DNMBPQ6XZF7 1577 aa20.93■□□□□ 0.94
DDX55-210ENST00000543016 PHF23Q9BUL5 403 aaPredicted RBP20.92■□□□□ 0.94
DDX55-210ENST00000543016 TOPBP1Q92547 1522 aa20.92■□□□□ 0.94
DDX55-210ENST00000543016 SENP3Q9H4L4 574 aaPredicted RBP20.91■□□□□ 0.94
DDX55-210ENST00000543016 WRNQ14191 1432 aaPredicted RBP eCLIP20.89■□□□□ 0.94
DDX55-210ENST00000543016 CUX1P39880 1505 aa20.84■□□□□ 0.93
DDX55-210ENST00000543016 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
DDX55-210ENST00000543016 POLA1P09884 1462 aaPredicted RBP20.76■□□□□ 0.91
DDX55-210ENST00000543016 IFT140Q96RY7 1462 aa20.76■□□□□ 0.91
DDX55-210ENST00000543016 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
DDX55-210ENST00000543016 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
DDX55-210ENST00000543016 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
DDX55-210ENST00000543016 SOGA1O94964 1423 aa20.72■□□□□ 0.91
DDX55-210ENST00000543016 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.89
DDX55-210ENST00000543016 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
DDX55-210ENST00000543016 RAD54L2Q9Y4B4 1467 aa20.62■□□□□ 0.89
DDX55-210ENST00000543016 ABCA10Q8WWZ4 1543 aa20.61■□□□□ 0.89
DDX55-210ENST00000543016 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
DDX55-210ENST00000543016 ZNF608Q9ULD9 1512 aaPredicted RBP20.54■□□□□ 0.88
DDX55-210ENST00000543016 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
DDX55-210ENST00000543016 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.874e-6■■■■□ 20.1
DDX55-210ENST00000543016 EIF4G3O43432 1585 aaKnown RBP20.47■□□□□ 0.87
DDX55-210ENST00000543016 GAPVD1Q14C86 1478 aa20.47■□□□□ 0.87
DDX55-210ENST00000543016 KIF27Q86VH2 1401 aa20.46■□□□□ 0.87
DDX55-210ENST00000543016 GRIN2BQ13224 1484 aa20.45■□□□□ 0.86
DDX55-210ENST00000543016 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
DDX55-210ENST00000543016 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
DDX55-210ENST00000543016 MAGI1Q96QZ7 1491 aaPredicted RBP20.37■□□□□ 0.85
DDX55-210ENST00000543016 EEA1Q15075 1411 aa20.33■□□□□ 0.84
DDX55-210ENST00000543016 IGF1RP08069 1367 aa20.32■□□□□ 0.84
DDX55-210ENST00000543016 PBRM1Q86U86 1689 aa20.32■□□□□ 0.84
DDX55-210ENST00000543016 SNAPC4Q5SXM2 1469 aa20.31■□□□□ 0.84
DDX55-210ENST00000543016 FHAD1B1AJZ9 1412 aa20.28■□□□□ 0.84
DDX55-210ENST00000543016 SYNJ2O15056 1496 aa20.28■□□□□ 0.84
DDX55-210ENST00000543016 CHMP7Q8WUX9 453 aaPredicted RBP20.26■□□□□ 0.83
DDX55-210ENST00000543016 RUSC2Q8N2Y8 1516 aa20.23■□□□□ 0.83
DDX55-210ENST00000543016 ADAMTS12P58397 1594 aa20.22■□□□□ 0.83
DDX55-210ENST00000543016 CUL7Q14999 1698 aa20.22■□□□□ 0.83
DDX55-210ENST00000543016 CARMIL1Q5VZK9 1371 aa20.21■□□□□ 0.83
DDX55-210ENST00000543016 FBLN2P98095 1184 aa20.21■□□□□ 0.83
DDX55-210ENST00000543016 OSCARQ8IYS5 282 aa20.21■□□□□ 0.83
DDX55-210ENST00000543016 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
DDX55-210ENST00000543016 GRIN2AQ12879 1464 aa20.15■□□□□ 0.82
DDX55-210ENST00000543016 PRXQ9BXM0 1461 aa20.12■□□□□ 0.81
DDX55-210ENST00000543016 CHD1O14646 1710 aa20.12■□□□□ 0.81
DDX55-210ENST00000543016 RAPGEF2Q9Y4G8 1499 aa20.11■□□□□ 0.81
DDX55-210ENST00000543016 FAM9AQ8IZU1 332 aaPredicted RBP20.09■□□□□ 0.81
DDX55-210ENST00000543016 NUP160Q12769 1436 aa20.08■□□□□ 0.8
DDX55-210ENST00000543016 DNAJC5Q9H3Z4 198 aa19.99■□□□□ 0.79
DDX55-210ENST00000543016 KIF21BO75037 1637 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms