RNA–Protein interactions for RNA: ENST00000542340.1

CACNA2D4-215, Transcript of calcium voltage-gated channel auxiliary subunit alpha2delta 4, human

TSL 3

Gene CACNA2D4, Length 558 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA2D4-215	ENST00000542340	KIAA0586	Q9BVV6	1533 aa		33.93	■■■■□ 3.02
CACNA2D4-215	ENST00000542340	ERCC6L2	Q5T890	1561 aa		33.91	■■■■□ 3.02
CACNA2D4-215	ENST00000542340	PRG4	Q92954	1404 aa	Predicted RBP	33.87	■■■■□ 3.01
CACNA2D4-215	ENST00000542340	RAPGEF2	Q9Y4G8	1499 aa		33.87	■■■■□ 3.01
CACNA2D4-215	ENST00000542340	CHIC1	Q5VXU3	224 aa		33.74	■■■□□ 2.99
CACNA2D4-215	ENST00000542340	PRX	Q9BXM0	1461 aa		33.72	■■■□□ 2.99
CACNA2D4-215	ENST00000542340	CSRNP3	Q8WYN3	585 aa		33.69	■■■□□ 2.98
CACNA2D4-215	ENST00000542340	EEA1	Q15075	1411 aa		33.69	■■■□□ 2.98
CACNA2D4-215	ENST00000542340	IQGAP2	Q13576	1575 aa		33.67	■■■□□ 2.98
CACNA2D4-215	ENST00000542340	CARMIL2	Q6F5E8	1435 aa		33.58	■■■□□ 2.97
CACNA2D4-215	ENST00000542340	UGGT2	Q9NYU1	1516 aa		33.51	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	TRH	P20396	242 aa	Predicted RBP	33.49	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.49	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	CTTNBP2	Q8WZ74	1663 aa		33.48	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	TNIK	Q9UKE5	1360 aa		33.47	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	PTPRG	P23470	1445 aa		33.47	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	DISP1	Q96F81	1524 aa		33.47	■■■□□ 2.95
CACNA2D4-215	ENST00000542340	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.35	■■■□□ 2.93
CACNA2D4-215	ENST00000542340	KIAA0556	O60303	1618 aa		33.35	■■■□□ 2.93
CACNA2D4-215	ENST00000542340	NPM1	P06748	294 aa	Known RBP eCLIP	33.34	■■■□□ 2.93
CACNA2D4-215	ENST00000542340	ADCY10	Q96PN6	1610 aa		33.34	■■■□□ 2.93
CACNA2D4-215	ENST00000542340	GOLGA3	Q08378	1498 aa		33.33	■■■□□ 2.93
CACNA2D4-215	ENST00000542340	KIF21B	O75037	1637 aa		33.29	■■■□□ 2.92
CACNA2D4-215	ENST00000542340	UACA	Q9BZF9	1416 aa		33.24	■■■□□ 2.91
CACNA2D4-215	ENST00000542340	UHRF1BP1L	A0JNW5	1464 aa		33.22	■■■□□ 2.91
CACNA2D4-215	ENST00000542340	MAPKBP1	O60336	1514 aa		33.19	■■■□□ 2.9
CACNA2D4-215	ENST00000542340	ABCC2	Q92887	1545 aa		33.18	■■■□□ 2.9
CACNA2D4-215	ENST00000542340	P3H3	Q8IVL6	736 aa		33.09	■■■□□ 2.89
CACNA2D4-215	ENST00000542340	SAMD9	Q5K651	1589 aa		33.09	■■■□□ 2.89
CACNA2D4-215	ENST00000542340	ABCC10	Q5T3U5	1492 aa		33.07	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	UBTF	P17480	764 aa	Known RBP	33.06	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	PLB1	Q6P1J6	1458 aa		33.05	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	KDM5B	Q9UGL1	1544 aa		33.05	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	EHMT2	Q96KQ7	1210 aa		33.04	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	RANGAP1	P46060	587 aa	Predicted RBP	33.02	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	FAM69C	Q0P6D2	419 aa		33.02	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	ABCA8	O94911	1581 aa		33.01	■■■□□ 2.88
CACNA2D4-215	ENST00000542340	KIF13A	Q9H1H9	1805 aa		33.01	■■■□□ 2.87
CACNA2D4-215	ENST00000542340	ASXL2	Q76L83	1435 aa		32.97	■■■□□ 2.87
CACNA2D4-215	ENST00000542340	DIP2B	Q9P265	1576 aa		32.96	■■■□□ 2.87
CACNA2D4-215	ENST00000542340	EFCAB5	A4FU69	1503 aa		32.93	■■■□□ 2.86
CACNA2D4-215	ENST00000542340	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.93	■■■□□ 2.86
CACNA2D4-215	ENST00000542340	FHOD3	Q2V2M9	1422 aa		32.89	■■■□□ 2.86
CACNA2D4-215	ENST00000542340	GLI2	P10070	1586 aa		32.8	■■■□□ 2.84
CACNA2D4-215	ENST00000542340	RAPGEF6	Q8TEU7	1601 aa		32.79	■■■□□ 2.84
CACNA2D4-215	ENST00000542340	WDR7	Q9Y4E6	1490 aa		32.78	■■■□□ 2.84
CACNA2D4-215	ENST00000542340	EPRS	P07814	1512 aa	Known RBP	32.77	■■■□□ 2.84
CACNA2D4-215	ENST00000542340	ATP10B	O94823	1461 aa		32.77	■■■□□ 2.84
CACNA2D4-215	ENST00000542340	ARHGAP35	Q9NRY4	1499 aa		32.74	■■■□□ 2.83
CACNA2D4-215	ENST00000542340	ARID3C	A6NKF2	412 aa		32.72	■■■□□ 2.83
CACNA2D4-215	ENST00000542340	NUP153	P49790	1475 aa	Known RBP	32.7	■■■□□ 2.83
CACNA2D4-215	ENST00000542340	FMN1	Q68DA7	1419 aa		32.66	■■■□□ 2.82
CACNA2D4-215	ENST00000542340	KCNH8	Q96L42	1107 aa		32.65	■■■□□ 2.82
CACNA2D4-215	ENST00000542340	TSPOAP1	O95153	1857 aa		32.65	■■■□□ 2.82
CACNA2D4-215	ENST00000542340	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.62	■■■□□ 2.81
CACNA2D4-215	ENST00000542340	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.62	■■■□□ 2.81
CACNA2D4-215	ENST00000542340	MAP3K4	Q9Y6R4	1608 aa		32.61	■■■□□ 2.81
CACNA2D4-215	ENST00000542340	PPRC1	Q5VV67	1664 aa	Known RBP	32.56	■■■□□ 2.8
CACNA2D4-215	ENST00000542340	CLIP1	P30622	1438 aa		32.51	■■■□□ 2.8
CACNA2D4-215	ENST00000542340	CD109	Q6YHK3	1445 aa		32.51	■■■□□ 2.8
CACNA2D4-215	ENST00000542340	TEX14	Q8IWB6	1497 aa		32.51	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	PLEKHD1	A6NEE1	506 aa		32.51	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	CFAP43	Q8NDM7	1665 aa		32.49	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.48	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	KDM6B	O15054	1643 aa		32.48	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	HECW1	Q76N89	1606 aa		32.46	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	MAGI3	Q5TCQ9	1506 aa		32.46	■■■□□ 2.79
CACNA2D4-215	ENST00000542340	CDK13	Q14004	1512 aa	Known RBP	32.42	■■■□□ 2.78
CACNA2D4-215	ENST00000542340	ABCA9	Q8IUA7	1624 aa		32.4	■■■□□ 2.78
CACNA2D4-215	ENST00000542340	CASKIN1	Q8WXD9	1431 aa		32.38	■■■□□ 2.77
CACNA2D4-215	ENST00000542340	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.36	■■■□□ 2.77
CACNA2D4-215	ENST00000542340	LOC105371045	A0A1W2PR82	267 aa		32.35	■■■□□ 2.77
CACNA2D4-215	ENST00000542340	CEP162	Q5TB80	1403 aa		32.33	■■■□□ 2.77
CACNA2D4-215	ENST00000542340	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.32	■■■□□ 2.76
CACNA2D4-215	ENST00000542340	PCF11	O94913	1555 aa	Known RBP	32.31	■■■□□ 2.76
CACNA2D4-215	ENST00000542340	FYCO1	Q9BQS8	1478 aa		32.28	■■■□□ 2.76
CACNA2D4-215	ENST00000542340	CCDC18	Q5T9S5	1454 aa		32.26	■■■□□ 2.75
CACNA2D4-215	ENST00000542340	PHLDB1	Q86UU1	1377 aa		32.25	■■■□□ 2.75
CACNA2D4-215	ENST00000542340	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.24	■■■□□ 2.75
CACNA2D4-215	ENST00000542340	LRRIQ1	Q96JM4	1722 aa		32.23	■■■□□ 2.75
CACNA2D4-215	ENST00000542340	TRO	Q12816	1431 aa	Predicted RBP	32.21	■■■□□ 2.75
CACNA2D4-215	ENST00000542340	NEO1	Q92859	1461 aa		32.19	■■■□□ 2.74
CACNA2D4-215	ENST00000542340	ARAP3	Q8WWN8	1544 aa		32.19	■■■□□ 2.74
CACNA2D4-215	ENST00000542340	TTC37	Q6PGP7	1564 aa		32.17	■■■□□ 2.74
CACNA2D4-215	ENST00000542340	KIF14	Q15058	1648 aa		32.1	■■■□□ 2.73
CACNA2D4-215	ENST00000542340	PLCH2	O75038	1416 aa		32.09	■■■□□ 2.73
CACNA2D4-215	ENST00000542340	FANCA	O15360	1455 aa		32.09	■■■□□ 2.73
CACNA2D4-215	ENST00000542340	AKNA	Q7Z591	1439 aa		32.05	■■■□□ 2.72
CACNA2D4-215	ENST00000542340	CFAP74	Q9C0B2	1584 aa		32.04	■■■□□ 2.72
CACNA2D4-215	ENST00000542340	RAPGEF3	O95398	923 aa		32.01	■■■□□ 2.71
CACNA2D4-215	ENST00000542340	EFCAB2	Q5VUJ9	269 aa		31.99	■■■□□ 2.71
CACNA2D4-215	ENST00000542340	MYO5C	Q9NQX4	1742 aa		31.98	■■■□□ 2.71
CACNA2D4-215	ENST00000542340	DENND4B	O75064	1496 aa	Predicted RBP	31.97	■■■□□ 2.71
CACNA2D4-215	ENST00000542340	VPS8	Q8N3P4	1428 aa		31.96	■■■□□ 2.71
CACNA2D4-215	ENST00000542340	MTUS2	Q5JR59	1369 aa		31.92	■■■□□ 2.7
CACNA2D4-215	ENST00000542340	AEBP2	Q6ZN18	517 aa	Predicted RBP	31.91	■■■□□ 2.7
CACNA2D4-215	ENST00000542340	ADGRL1	O94910	1474 aa		31.91	■■■□□ 2.7
CACNA2D4-215	ENST00000542340	FRMPD1	Q5SYB0	1578 aa		31.9	■■■□□ 2.7
CACNA2D4-215	ENST00000542340	ARHGAP5	Q13017	1502 aa		31.9	■■■□□ 2.7
CACNA2D4-215	ENST00000542340	SCAPER	Q9BY12	1400 aa		31.88	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms