RNA–Protein interactions for RNA: ENST00000541959.5

ARF3-208, Transcript of ADP ribosylation factor 3, human

APPRIS P1 TSL 5 BASIC

Gene ARF3, Length 807 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARF3-208	ENST00000541959	CARMIL1	Q5VZK9	1371 aa		33.08	■■■□□ 2.89
ARF3-208	ENST00000541959	PRG4	Q92954	1404 aa	Predicted RBP	33.03	■■■□□ 2.88
ARF3-208	ENST00000541959	TRH	P20396	242 aa	Predicted RBP	32.99	■■■□□ 2.87
ARF3-208	ENST00000541959	CHIC1	Q5VXU3	224 aa		32.98	■■■□□ 2.87
ARF3-208	ENST00000541959	KIAA0586	Q9BVV6	1533 aa		32.97	■■■□□ 2.87
ARF3-208	ENST00000541959	RAPGEF2	Q9Y4G8	1499 aa		32.87	■■■□□ 2.85
ARF3-208	ENST00000541959	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.81	■■■□□ 2.84
ARF3-208	ENST00000541959	CSRNP3	Q8WYN3	585 aa		32.76	■■■□□ 2.83
ARF3-208	ENST00000541959	EEA1	Q15075	1411 aa		32.75	■■■□□ 2.83
ARF3-208	ENST00000541959	IQGAP2	Q13576	1575 aa		32.74	■■■□□ 2.83
ARF3-208	ENST00000541959	PRX	Q9BXM0	1461 aa		32.71	■■■□□ 2.83
ARF3-208	ENST00000541959	CARMIL2	Q6F5E8	1435 aa		32.64	■■■□□ 2.82
ARF3-208	ENST00000541959	CTTNBP2	Q8WZ74	1663 aa		32.6	■■■□□ 2.81
ARF3-208	ENST00000541959	PTPRG	P23470	1445 aa		32.59	■■■□□ 2.81
ARF3-208	ENST00000541959	ADCY10	Q96PN6	1610 aa		32.59	■■■□□ 2.81
ARF3-208	ENST00000541959	NPM1	P06748	294 aa	Known RBP eCLIP	32.57	■■■□□ 2.8
ARF3-208	ENST00000541959	TNIK	Q9UKE5	1360 aa		32.57	■■■□□ 2.8
ARF3-208	ENST00000541959	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.54	■■■□□ 2.8
ARF3-208	ENST00000541959	DISP1	Q96F81	1524 aa		32.54	■■■□□ 2.8
ARF3-208	ENST00000541959	UGGT2	Q9NYU1	1516 aa		32.54	■■■□□ 2.8
ARF3-208	ENST00000541959	KIF13A	Q9H1H9	1805 aa		32.48	■■■□□ 2.79
ARF3-208	ENST00000541959	EHMT2	Q96KQ7	1210 aa		32.46	■■■□□ 2.79
ARF3-208	ENST00000541959	MAPKBP1	O60336	1514 aa		32.44	■■■□□ 2.78
ARF3-208	ENST00000541959	KIAA0556	O60303	1618 aa		32.43	■■■□□ 2.78
ARF3-208	ENST00000541959	KIF21B	O75037	1637 aa		32.43	■■■□□ 2.78
ARF3-208	ENST00000541959	ABCC10	Q5T3U5	1492 aa		32.35	■■■□□ 2.77
ARF3-208	ENST00000541959	UACA	Q9BZF9	1416 aa		32.35	■■■□□ 2.77
ARF3-208	ENST00000541959	UHRF1BP1L	A0JNW5	1464 aa		32.34	■■■□□ 2.77
ARF3-208	ENST00000541959	ABCC2	Q92887	1545 aa		32.33	■■■□□ 2.77
ARF3-208	ENST00000541959	FAM69C	Q0P6D2	419 aa		32.33	■■■□□ 2.77
ARF3-208	ENST00000541959	GOLGA3	Q08378	1498 aa		32.33	■■■□□ 2.77
ARF3-208	ENST00000541959	RANGAP1	P46060	587 aa	Predicted RBP	32.31	■■■□□ 2.76
ARF3-208	ENST00000541959	DIP2B	Q9P265	1576 aa		32.29	■■■□□ 2.76
ARF3-208	ENST00000541959	UBTF	P17480	764 aa	Known RBP	32.28	■■■□□ 2.76
ARF3-208	ENST00000541959	P3H3	Q8IVL6	736 aa		32.23	■■■□□ 2.75
ARF3-208	ENST00000541959	KDM5B	Q9UGL1	1544 aa		32.19	■■■□□ 2.74
ARF3-208	ENST00000541959	ASXL2	Q76L83	1435 aa		32.17	■■■□□ 2.74
ARF3-208	ENST00000541959	PLB1	Q6P1J6	1458 aa		32.16	■■■□□ 2.74
ARF3-208	ENST00000541959	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.15	■■■□□ 2.74
ARF3-208	ENST00000541959	TSPOAP1	O95153	1857 aa		32.14	■■■□□ 2.74
ARF3-208	ENST00000541959	SAMD9	Q5K651	1589 aa		32.12	■■■□□ 2.73
ARF3-208	ENST00000541959	ABCA8	O94911	1581 aa		32.11	■■■□□ 2.73
ARF3-208	ENST00000541959	GLI2	P10070	1586 aa		32.04	■■■□□ 2.72
ARF3-208	ENST00000541959	FHOD3	Q2V2M9	1422 aa		32.01	■■■□□ 2.72
ARF3-208	ENST00000541959	EFCAB5	A4FU69	1503 aa		32	■■■□□ 2.71
ARF3-208	ENST00000541959	EPRS	P07814	1512 aa	Known RBP	31.99	■■■□□ 2.71
ARF3-208	ENST00000541959	WDR7	Q9Y4E6	1490 aa		31.93	■■■□□ 2.7
ARF3-208	ENST00000541959	PPRC1	Q5VV67	1664 aa	Known RBP	31.92	■■■□□ 2.7
ARF3-208	ENST00000541959	ARID3C	A6NKF2	412 aa		31.9	■■■□□ 2.7
ARF3-208	ENST00000541959	KDM6B	O15054	1643 aa		31.89	■■■□□ 2.7
ARF3-208	ENST00000541959	MAP3K4	Q9Y6R4	1608 aa		31.89	■■■□□ 2.7
ARF3-208	ENST00000541959	RAPGEF6	Q8TEU7	1601 aa		31.87	■■■□□ 2.69
ARF3-208	ENST00000541959	ATP10B	O94823	1461 aa		31.85	■■■□□ 2.69
ARF3-208	ENST00000541959	ARHGAP35	Q9NRY4	1499 aa		31.85	■■■□□ 2.69
ARF3-208	ENST00000541959	KCNH8	Q96L42	1107 aa		31.83	■■■□□ 2.69
ARF3-208	ENST00000541959	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	31.76	■■■□□ 2.67
ARF3-208	ENST00000541959	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.76	■■■□□ 2.67
ARF3-208	ENST00000541959	TEX14	Q8IWB6	1497 aa		31.75	■■■□□ 2.67
ARF3-208	ENST00000541959	CFAP43	Q8NDM7	1665 aa		31.75	■■■□□ 2.67
ARF3-208	ENST00000541959	NUP153	P49790	1475 aa	Known RBP	31.73	■■■□□ 2.67
ARF3-208	ENST00000541959	ATP1B4	Q9UN42	357 aa	Predicted RBP	31.72	■■■□□ 2.67
ARF3-208	ENST00000541959	CLIP1	P30622	1438 aa		31.71	■■■□□ 2.67
ARF3-208	ENST00000541959	FMN1	Q68DA7	1419 aa		31.71	■■■□□ 2.67
ARF3-208	ENST00000541959	CD109	Q6YHK3	1445 aa		31.71	■■■□□ 2.67
ARF3-208	ENST00000541959	LOC105371045	A0A1W2PR82	267 aa		31.69	■■■□□ 2.66
ARF3-208	ENST00000541959	MAGI3	Q5TCQ9	1506 aa		31.65	■■■□□ 2.66
ARF3-208	ENST00000541959	COL17A1	Q9UMD9	1497 aa	Predicted RBP	31.65	■■■□□ 2.66
ARF3-208	ENST00000541959	AEBP2	Q6ZN18	517 aa	Predicted RBP	31.62	■■■□□ 2.65
ARF3-208	ENST00000541959	HECW1	Q76N89	1606 aa		31.6	■■■□□ 2.65
ARF3-208	ENST00000541959	ABCA9	Q8IUA7	1624 aa		31.59	■■■□□ 2.65
ARF3-208	ENST00000541959	CEP162	Q5TB80	1403 aa		31.57	■■■□□ 2.64
ARF3-208	ENST00000541959	PLEKHD1	A6NEE1	506 aa		31.56	■■■□□ 2.64
ARF3-208	ENST00000541959	CDK13	Q14004	1512 aa	Known RBP	31.55	■■■□□ 2.64
ARF3-208	ENST00000541959	PCF11	O94913	1555 aa	Known RBP	31.51	■■■□□ 2.64
ARF3-208	ENST00000541959	CASKIN1	Q8WXD9	1431 aa		31.45	■■■□□ 2.63
ARF3-208	ENST00000541959	LRRIQ1	Q96JM4	1722 aa		31.41	■■■□□ 2.62
ARF3-208	ENST00000541959	ARAP3	Q8WWN8	1544 aa		31.4	■■■□□ 2.62
ARF3-208	ENST00000541959	FYCO1	Q9BQS8	1478 aa		31.4	■■■□□ 2.62
ARF3-208	ENST00000541959	PHLDB1	Q86UU1	1377 aa		31.39	■■■□□ 2.62
ARF3-208	ENST00000541959	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.38	■■■□□ 2.61
ARF3-208	ENST00000541959	KDM4F	A0A1W2PPD8	638 aa		31.37	■■■□□ 2.61
ARF3-208	ENST00000541959	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.37	■■■□□ 2.61	1e-10	■■□□□ 13.3
ARF3-208	ENST00000541959	CCDC18	Q5T9S5	1454 aa		31.35	■■■□□ 2.61
ARF3-208	ENST00000541959	NEO1	Q92859	1461 aa		31.35	■■■□□ 2.61
ARF3-208	ENST00000541959	TTC37	Q6PGP7	1564 aa		31.31	■■■□□ 2.6
ARF3-208	ENST00000541959	TRO	Q12816	1431 aa	Predicted RBP	31.25	■■■□□ 2.59
ARF3-208	ENST00000541959	RAPGEF3	O95398	923 aa		31.24	■■■□□ 2.59
ARF3-208	ENST00000541959	FANCA	O15360	1455 aa		31.23	■■■□□ 2.59
ARF3-208	ENST00000541959	KIF14	Q15058	1648 aa		31.22	■■■□□ 2.59
ARF3-208	ENST00000541959	CFAP74	Q9C0B2	1584 aa		31.22	■■■□□ 2.59
ARF3-208	ENST00000541959	ADGRL1	O94910	1474 aa		31.21	■■■□□ 2.59
ARF3-208	ENST00000541959	AKNA	Q7Z591	1439 aa		31.21	■■■□□ 2.59
ARF3-208	ENST00000541959	PLCH2	O75038	1416 aa		31.17	■■■□□ 2.58
ARF3-208	ENST00000541959	VPS8	Q8N3P4	1428 aa		31.16	■■■□□ 2.58
ARF3-208	ENST00000541959	MYO5C	Q9NQX4	1742 aa		31.16	■■■□□ 2.58
ARF3-208	ENST00000541959	FRMPD1	Q5SYB0	1578 aa		31.16	■■■□□ 2.58
ARF3-208	ENST00000541959	DENND4B	O75064	1496 aa	Predicted RBP	31.14	■■■□□ 2.57
ARF3-208	ENST00000541959	RICTOR	Q6R327	1708 aa		31.12	■■■□□ 2.57
ARF3-208	ENST00000541959	MTUS2	Q5JR59	1369 aa		31.09	■■■□□ 2.57
ARF3-208	ENST00000541959	EFCAB2	Q5VUJ9	269 aa		31.07	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms