RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 IGF1RP08069 1367 aa27.4■■□□□ 1.98
CLSTN3-213ENST00000541953 ADCY10Q96PN6 1610 aa27.38■■□□□ 1.97
CLSTN3-213ENST00000541953 CUL7Q14999 1698 aa27.35■■□□□ 1.97
CLSTN3-213ENST00000541953 KIF27Q86VH2 1401 aa27.33■■□□□ 1.97
CLSTN3-213ENST00000541953 KIAA0586Q9BVV6 1533 aa27.32■■□□□ 1.96
CLSTN3-213ENST00000541953 MAPKBP1O60336 1514 aa27.28■■□□□ 1.96
CLSTN3-213ENST00000541953 AEBP2Q6ZN18 517 aaPredicted RBP27.28■■□□□ 1.96
CLSTN3-213ENST00000541953 DIP2BQ9P265 1576 aa27.27■■□□□ 1.96
CLSTN3-213ENST00000541953 ABCC10Q5T3U5 1492 aa27.27■■□□□ 1.96
CLSTN3-213ENST00000541953 FAM69CQ0P6D2 419 aa27.2■■□□□ 1.94
CLSTN3-213ENST00000541953 CARMIL1Q5VZK9 1371 aa27.18■■□□□ 1.94
CLSTN3-213ENST00000541953 NPM1P06748 294 aaKnown RBP eCLIP27.12■■□□□ 1.93
CLSTN3-213ENST00000541953 TSPOAP1O95153 1857 aa27.1■■□□□ 1.93
CLSTN3-213ENST00000541953 IQGAP2Q13576 1575 aa27.09■■□□□ 1.93
CLSTN3-213ENST00000541953 TTBK1Q5TCY1 1321 aaPredicted RBP27.09■■□□□ 1.93
CLSTN3-213ENST00000541953 PTPRGP23470 1445 aa27.07■■□□□ 1.92
CLSTN3-213ENST00000541953 KDM6BO15054 1643 aa27.02■■□□□ 1.92
CLSTN3-213ENST00000541953 DISP1Q96F81 1524 aa27.02■■□□□ 1.92
CLSTN3-213ENST00000541953 TNIKQ9UKE5 1360 aa27.01■■□□□ 1.91
CLSTN3-213ENST00000541953 ABCC2Q92887 1545 aa27■■□□□ 1.91
CLSTN3-213ENST00000541953 CARMIL2Q6F5E8 1435 aa26.99■■□□□ 1.91
CLSTN3-213ENST00000541953 PPRC1Q5VV67 1664 aaKnown RBP26.96■■□□□ 1.91
CLSTN3-213ENST00000541953 ASXL2Q76L83 1435 aa26.94■■□□□ 1.9
CLSTN3-213ENST00000541953 RAPGEF2Q9Y4G8 1499 aa26.93■■□□□ 1.9
CLSTN3-213ENST00000541953 UHRF1BP1LA0JNW5 1464 aa26.92■■□□□ 1.9
CLSTN3-213ENST00000541953 UGGT2Q9NYU1 1516 aa26.91■■□□□ 1.9
CLSTN3-213ENST00000541953 KIAA0556O60303 1618 aa26.89■■□□□ 1.9
CLSTN3-213ENST00000541953 UACAQ9BZF9 1416 aa26.89■■□□□ 1.89
CLSTN3-213ENST00000541953 GLI2P10070 1586 aa26.87■■□□□ 1.89
CLSTN3-213ENST00000541953 PLB1Q6P1J6 1458 aa26.85■■□□□ 1.89
CLSTN3-213ENST00000541953 ZCCHC11Q5TAX3 1644 aaKnown RBP26.84■■□□□ 1.89
CLSTN3-213ENST00000541953 KDM4FA0A1W2PPD8 638 aa26.83■■□□□ 1.89
CLSTN3-213ENST00000541953 KDM5BQ9UGL1 1544 aa26.83■■□□□ 1.89
CLSTN3-213ENST00000541953 CTTNBP2Q8WZ74 1663 aa26.8■■□□□ 1.88
CLSTN3-213ENST00000541953 EPRSP07814 1512 aaKnown RBP26.79■■□□□ 1.88
CLSTN3-213ENST00000541953 MAP3K4Q9Y6R4 1608 aa26.78■■□□□ 1.88
CLSTN3-213ENST00000541953 COL17A1Q9UMD9 1497 aaPredicted RBP26.76■■□□□ 1.87
CLSTN3-213ENST00000541953 PRXQ9BXM0 1461 aa26.67■■□□□ 1.86
CLSTN3-213ENST00000541953 ABCA8O94911 1581 aa26.65■■□□□ 1.86
CLSTN3-213ENST00000541953 WDR7Q9Y4E6 1490 aa26.64■■□□□ 1.86
CLSTN3-213ENST00000541953 ADGRL1O94910 1474 aa26.59■■□□□ 1.85
CLSTN3-213ENST00000541953 GOLGA3Q08378 1498 aa26.57■■□□□ 1.84
CLSTN3-213ENST00000541953 TEX14Q8IWB6 1497 aa26.56■■□□□ 1.84
CLSTN3-213ENST00000541953 CFAP43Q8NDM7 1665 aa26.51■■□□□ 1.83
CLSTN3-213ENST00000541953 MAGI3Q5TCQ9 1506 aa26.46■■□□□ 1.83
CLSTN3-213ENST00000541953 KCNH8Q96L42 1107 aa26.46■■□□□ 1.83
CLSTN3-213ENST00000541953 CD109Q6YHK3 1445 aa26.46■■□□□ 1.83
CLSTN3-213ENST00000541953 ARID3CA6NKF2 412 aa26.44■■□□□ 1.82
CLSTN3-213ENST00000541953 P3H3Q8IVL6 736 aa26.44■■□□□ 1.82
CLSTN3-213ENST00000541953 SAMD9Q5K651 1589 aa26.42■■□□□ 1.82
CLSTN3-213ENST00000541953 ATP10BO94823 1461 aa26.4■■□□□ 1.82
CLSTN3-213ENST00000541953 KIF21BO75037 1637 aa26.33■■□□□ 1.81
CLSTN3-213ENST00000541953 CSRNP3Q8WYN3 585 aa26.32■■□□□ 1.8
CLSTN3-213ENST00000541953 RAPGEF6Q8TEU7 1601 aa26.32■■□□□ 1.8
CLSTN3-213ENST00000541953 HECW2Q9P2P5 1572 aa26.3■■□□□ 1.8
CLSTN3-213ENST00000541953 ABCA9Q8IUA7 1624 aa26.3■■□□□ 1.8
CLSTN3-213ENST00000541953 ARAP3Q8WWN8 1544 aa26.26■■□□□ 1.79
CLSTN3-213ENST00000541953 NUP153P49790 1475 aaKnown RBP26.24■■□□□ 1.79
CLSTN3-213ENST00000541953 FHOD3Q2V2M9 1422 aa26.23■■□□□ 1.79
CLSTN3-213ENST00000541953 RANGAP1P46060 587 aaPredicted RBP26.21■■□□□ 1.79
CLSTN3-213ENST00000541953 FRMPD1Q5SYB0 1578 aa26.19■■□□□ 1.78
CLSTN3-213ENST00000541953 FAM9AQ8IZU1 332 aaPredicted RBP26.15■■□□□ 1.78
CLSTN3-213ENST00000541953 EEA1Q15075 1411 aa26.14■■□□□ 1.78
CLSTN3-213ENST00000541953 RAPGEF3O95398 923 aa26.13■■□□□ 1.77
CLSTN3-213ENST00000541953 ILDR1Q86SU0 546 aaPredicted RBP26.13■■□□□ 1.77
CLSTN3-213ENST00000541953 NEO1Q92859 1461 aa26.11■■□□□ 1.77
CLSTN3-213ENST00000541953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.1■■□□□ 1.77
CLSTN3-213ENST00000541953 HNRNPUL2Q1KMD3 747 aaKnown RBP26.1■■□□□ 1.77
CLSTN3-213ENST00000541953 ADAMTSL3P82987 1691 aa26.08■■□□□ 1.77
CLSTN3-213ENST00000541953 TTC37Q6PGP7 1564 aa26.05■■□□□ 1.76
CLSTN3-213ENST00000541953 PHLDB1Q86UU1 1377 aa26.05■■□□□ 1.76
CLSTN3-213ENST00000541953 EFCAB5A4FU69 1503 aa26.04■■□□□ 1.76
CLSTN3-213ENST00000541953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.03■■□□□ 1.761e-6■■■■■ 42.9
CLSTN3-213ENST00000541953 CDK13Q14004 1512 aaKnown RBP26.02■■□□□ 1.76
CLSTN3-213ENST00000541953 RICTORQ6R327 1708 aa26.02■■□□□ 1.76
CLSTN3-213ENST00000541953 BCORL1Q5H9F3 1711 aa26.01■■□□□ 1.75
CLSTN3-213ENST00000541953 PTPRMP28827 1452 aa26■■□□□ 1.75
CLSTN3-213ENST00000541953 MADDQ8WXG6 1647 aa25.99■■□□□ 1.75
CLSTN3-213ENST00000541953 ARHGEF40Q8TER5 1519 aa25.98■■□□□ 1.75
CLSTN3-213ENST00000541953 SIGLEC1Q9BZZ2 1709 aa25.97■■□□□ 1.75
CLSTN3-213ENST00000541953 EHMT2Q96KQ7 1210 aa25.96■■□□□ 1.75
CLSTN3-213ENST00000541953 FANCAO15360 1455 aa25.94■■□□□ 1.74
CLSTN3-213ENST00000541953 AKNAQ7Z591 1439 aa25.94■■□□□ 1.74
CLSTN3-213ENST00000541953 DENND4BO75064 1496 aaPredicted RBP25.92■■□□□ 1.74
CLSTN3-213ENST00000541953 PLEKHD1A6NEE1 506 aa25.92■■□□□ 1.74
CLSTN3-213ENST00000541953 CFAP74Q9C0B2 1584 aa25.9■■□□□ 1.74
CLSTN3-213ENST00000541953 RIMS1Q86UR5 1692 aaKnown RBP25.88■■□□□ 1.73
CLSTN3-213ENST00000541953 ZMYM4Q5VZL5 1548 aa25.88■■□□□ 1.73
CLSTN3-213ENST00000541953 ARHGAP35Q9NRY4 1499 aa25.87■■□□□ 1.73
CLSTN3-213ENST00000541953 YEATS2Q9ULM3 1422 aa25.87■■□□□ 1.73
CLSTN3-213ENST00000541953 ARID4BQ4LE39 1312 aaPredicted RBP25.86■■□□□ 1.73
CLSTN3-213ENST00000541953 LRRIQ1Q96JM4 1722 aa25.83■■□□□ 1.72
CLSTN3-213ENST00000541953 KIF14Q15058 1648 aa25.82■■□□□ 1.72
CLSTN3-213ENST00000541953 HECW1Q76N89 1606 aa25.82■■□□□ 1.72
CLSTN3-213ENST00000541953 ZFYVE16Q7Z3T8 1539 aa25.82■■□□□ 1.72
CLSTN3-213ENST00000541953 LMTK3Q96Q04 1460 aa25.81■■□□□ 1.72
CLSTN3-213ENST00000541953 PCF11O94913 1555 aaKnown RBP25.81■■□□□ 1.72
CLSTN3-213ENST00000541953 UBTFP17480 764 aaKnown RBP25.78■■□□□ 1.72
CLSTN3-213ENST00000541953 CHIC1Q5VXU3 224 aa25.78■■□□□ 1.72
CLSTN3-213ENST00000541953 PLCH2O75038 1416 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms