RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
SFSWAP-210ENST00000541286 ERICH3Q5RHP9 1530 aa21.92■■□□□ 1.1
SFSWAP-210ENST00000541286 CEP162Q5TB80 1403 aa21.92■■□□□ 1.1
SFSWAP-210ENST00000541286 KIF21BO75037 1637 aa21.92■■□□□ 1.1
SFSWAP-210ENST00000541286 GTF3C3Q9Y5Q9 886 aa21.91■■□□□ 1.1
SFSWAP-210ENST00000541286 FHAD1B1AJZ9 1412 aa21.88■■□□□ 1.09
SFSWAP-210ENST00000541286 ADAMTS12P58397 1594 aa21.88■■□□□ 1.09
SFSWAP-210ENST00000541286 ARID3CA6NKF2 412 aa21.87■■□□□ 1.09
SFSWAP-210ENST00000541286 TNIKQ9UKE5 1360 aa21.87■■□□□ 1.09
SFSWAP-210ENST00000541286 CCER1Q8TC90 406 aaPredicted RBP21.87■■□□□ 1.09
SFSWAP-210ENST00000541286 ACIN1Q9UKV3 1341 aaKnown RBP21.84■■□□□ 1.09
SFSWAP-210ENST00000541286 ATP1B4Q9UN42 357 aaPredicted RBP21.83■■□□□ 1.08
SFSWAP-210ENST00000541286 GRIN2AQ12879 1464 aa21.82■■□□□ 1.08
SFSWAP-210ENST00000541286 CLIP1P30622 1438 aa21.81■■□□□ 1.08
SFSWAP-210ENST00000541286 CUL7Q14999 1698 aa21.81■■□□□ 1.08
SFSWAP-210ENST00000541286 SYNJ2O15056 1496 aa21.8■■□□□ 1.08
SFSWAP-210ENST00000541286 CHD1O14646 1710 aa21.78■■□□□ 1.08
SFSWAP-210ENST00000541286 MAGI1Q96QZ7 1491 aaPredicted RBP21.78■■□□□ 1.08
SFSWAP-210ENST00000541286 CEP170Q5SW79 1584 aa21.75■■□□□ 1.07
SFSWAP-210ENST00000541286 FHOD3Q2V2M9 1422 aa21.73■■□□□ 1.07
SFSWAP-210ENST00000541286 ARAP1Q96P48 1450 aa21.7■■□□□ 1.07
SFSWAP-210ENST00000541286 ARHGAP35Q9NRY4 1499 aa21.69■■□□□ 1.06
SFSWAP-210ENST00000541286 JPH4Q96JJ6 628 aa21.69■■□□□ 1.06
SFSWAP-210ENST00000541286 YTHDC1Q96MU7 727 aaKnown RBP21.66■■□□□ 1.06
SFSWAP-210ENST00000541286 CTTNBP2Q8WZ74 1663 aa21.62■■□□□ 1.05
SFSWAP-210ENST00000541286 ERCC6L2Q5T890 1561 aa21.61■■□□□ 1.05
SFSWAP-210ENST00000541286 IQGAP2Q13576 1575 aa21.59■■□□□ 1.05
SFSWAP-210ENST00000541286 OSCARQ8IYS5 282 aa21.59■■□□□ 1.05
SFSWAP-210ENST00000541286 NUP160Q12769 1436 aa21.58■■□□□ 1.05
SFSWAP-210ENST00000541286 KIAA0586Q9BVV6 1533 aa21.56■■□□□ 1.04
SFSWAP-210ENST00000541286 PRG4Q92954 1404 aaPredicted RBP21.54■■□□□ 1.04
SFSWAP-210ENST00000541286 MYT1Q01538 1121 aa21.53■■□□□ 1.04
SFSWAP-210ENST00000541286 DIEXFQ68CQ4 756 aaKnown RBP21.53■■□□□ 1.04
SFSWAP-210ENST00000541286 KANK4Q5T7N3 995 aaPredicted RBP21.51■■□□□ 1.03
SFSWAP-210ENST00000541286 DISP1Q96F81 1524 aa21.5■■□□□ 1.03
SFSWAP-210ENST00000541286 CENPBP07199 599 aaPredicted RBP21.5■■□□□ 1.03
SFSWAP-210ENST00000541286 HNRNPUL2Q1KMD3 747 aaKnown RBP21.46■■□□□ 1.03
SFSWAP-210ENST00000541286 VPS8Q8N3P4 1428 aa21.45■■□□□ 1.02
SFSWAP-210ENST00000541286 PLB1Q6P1J6 1458 aa21.42■■□□□ 1.02
SFSWAP-210ENST00000541286 SAMD9Q5K651 1589 aa21.38■■□□□ 1.01
SFSWAP-210ENST00000541286 KIAA0556O60303 1618 aa21.38■■□□□ 1.01
SFSWAP-210ENST00000541286 APLP2Q06481 763 aa21.38■■□□□ 1.01
SFSWAP-210ENST00000541286 UGGT2Q9NYU1 1516 aa21.38■■□□□ 1.01
SFSWAP-210ENST00000541286 PCF11O94913 1555 aaKnown RBP21.37■■□□□ 1.01
SFSWAP-210ENST00000541286 CLASP1Q7Z460 1538 aa21.37■■□□□ 1.01
SFSWAP-210ENST00000541286 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
SFSWAP-210ENST00000541286 PTPRGP23470 1445 aa21.32■■□□□ 1
SFSWAP-210ENST00000541286 CDK13Q14004 1512 aaKnown RBP21.31■■□□□ 1
SFSWAP-210ENST00000541286 CARMIL2Q6F5E8 1435 aa21.31■■□□□ 1
SFSWAP-210ENST00000541286 EFCAB5A4FU69 1503 aa21.29■■□□□ 1
SFSWAP-210ENST00000541286 LRRIQ1Q96JM4 1722 aa21.25■□□□□ 0.99
SFSWAP-210ENST00000541286 FMN1Q68DA7 1419 aa21.24■□□□□ 0.99
SFSWAP-210ENST00000541286 SHROOM2Q13796 1616 aa21.23■□□□□ 0.99
SFSWAP-210ENST00000541286 KCNH8Q96L42 1107 aa21.21■□□□□ 0.99
SFSWAP-210ENST00000541286 ITGAEP38570 1179 aa21.2■□□□□ 0.98
SFSWAP-210ENST00000541286 NUP153P49790 1475 aaKnown RBP21.2■□□□□ 0.98
SFSWAP-210ENST00000541286 CASKIN1Q8WXD9 1431 aa21.19■□□□□ 0.98
SFSWAP-210ENST00000541286 ARHGEF11O15085 1522 aa21.18■□□□□ 0.98
SFSWAP-210ENST00000541286 MAGI3Q5TCQ9 1506 aa21.15■□□□□ 0.98
SFSWAP-210ENST00000541286 EPRSP07814 1512 aaKnown RBP21.13■□□□□ 0.97
SFSWAP-210ENST00000541286 MTUS2Q5JR59 1369 aa21.12■□□□□ 0.97
SFSWAP-210ENST00000541286 RAPGEF6Q8TEU7 1601 aa21.12■□□□□ 0.97
SFSWAP-210ENST00000541286 FYCO1Q9BQS8 1478 aa21.12■□□□□ 0.97
SFSWAP-210ENST00000541286 TIAM1Q13009 1591 aa21.1■□□□□ 0.97
SFSWAP-210ENST00000541286 UACAQ9BZF9 1416 aa21.1■□□□□ 0.97
SFSWAP-210ENST00000541286 ZNF316A6NFI3 1004 aaPredicted RBP21.09■□□□□ 0.97
SFSWAP-210ENST00000541286 ATP10BO94823 1461 aa21.09■□□□□ 0.97
SFSWAP-210ENST00000541286 RIMBP3CA6NJZ7 1639 aa21.08■□□□□ 0.97
SFSWAP-210ENST00000541286 RIMBP3BA6NNM3 1639 aa21.08■□□□□ 0.97
SFSWAP-210ENST00000541286 RIMBP3Q9UFD9 1639 aa21.08■□□□□ 0.97
SFSWAP-210ENST00000541286 LRRC9Q6ZRR7 1453 aa21.07■□□□□ 0.96
SFSWAP-210ENST00000541286 PHLDB1Q86UU1 1377 aa21.06■□□□□ 0.96
SFSWAP-210ENST00000541286 ABCA8O94911 1581 aa21.05■□□□□ 0.96
SFSWAP-210ENST00000541286 MIER1Q8N108 512 aa21.05■□□□□ 0.96
SFSWAP-210ENST00000541286 FAM50AQ14320 339 aaKnown RBP21.04■□□□□ 0.96
SFSWAP-210ENST00000541286 ZNF777Q9ULD5 760 aaPredicted RBP21.03■□□□□ 0.96
SFSWAP-210ENST00000541286 HECW1Q76N89 1606 aa21.02■□□□□ 0.96
SFSWAP-210ENST00000541286 ZNF644Q9H582 1327 aaPredicted RBP21.02■□□□□ 0.95
SFSWAP-210ENST00000541286 ADCY10Q96PN6 1610 aa21.01■□□□□ 0.95
SFSWAP-210ENST00000541286 PLEKHD1A6NEE1 506 aa21■□□□□ 0.95
SFSWAP-210ENST00000541286 ABCC2Q92887 1545 aa20.96■□□□□ 0.95
SFSWAP-210ENST00000541286 KIF14Q15058 1648 aa20.95■□□□□ 0.94
SFSWAP-210ENST00000541286 CFAP43Q8NDM7 1665 aa20.95■□□□□ 0.94
SFSWAP-210ENST00000541286 NCOA2Q15596 1464 aa20.93■□□□□ 0.94
SFSWAP-210ENST00000541286 NPM1P06748 294 aaKnown RBP eCLIP20.92■□□□□ 0.94
SFSWAP-210ENST00000541286 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
SFSWAP-210ENST00000541286 CHIC2Q9UKJ5 165 aa20.9■□□□□ 0.94
SFSWAP-210ENST00000541286 ZCCHC11Q5TAX3 1644 aaKnown RBP20.9■□□□□ 0.94
SFSWAP-210ENST00000541286 CCDC18Q5T9S5 1454 aa20.89■□□□□ 0.93
SFSWAP-210ENST00000541286 DNAJC5Q9H3Z4 198 aa20.88■□□□□ 0.93
SFSWAP-210ENST00000541286 TROQ12816 1431 aaPredicted RBP20.85■□□□□ 0.93
SFSWAP-210ENST00000541286 ASXL2Q76L83 1435 aa20.85■□□□□ 0.93
SFSWAP-210ENST00000541286 KDM5BQ9UGL1 1544 aa20.83■□□□□ 0.93
SFSWAP-210ENST00000541286 CFDP1Q9UEE9 299 aaPredicted RBP20.82■□□□□ 0.92
SFSWAP-210ENST00000541286 CCNB3Q8WWL7 1395 aa20.81■□□□□ 0.92
SFSWAP-210ENST00000541286 EHBP1L1Q8N3D4 1523 aa20.8■□□□□ 0.92
SFSWAP-210ENST00000541286 MAP3K1Q13233 1512 aa20.79■□□□□ 0.92
SFSWAP-210ENST00000541286 HNRNPMP52272 730 aaKnown RBP eCLIP20.79■□□□□ 0.92
SFSWAP-210ENST00000541286 BCL11AQ9H165 835 aa20.78■□□□□ 0.92
SFSWAP-210ENST00000541286 UHRF1BP1LA0JNW5 1464 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms