RNA–Protein interactions for RNA: ENST00000540113.5

C11orf54-214, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 1 (best) BASIC

Gene C11orf54, Length 2,442 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-214ENST00000540113 MRC2Q9UBG0 1479 aa17.2■□□□□ 0.34
C11orf54-214ENST00000540113 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
C11orf54-214ENST00000540113 PHF23Q9BUL5 403 aaPredicted RBP17.18■□□□□ 0.34
C11orf54-214ENST00000540113 TDRD9Q8NDG6 1382 aaKnown RBP17.18■□□□□ 0.34
C11orf54-214ENST00000540113 MAP3K1Q13233 1512 aa17.17■□□□□ 0.34
C11orf54-214ENST00000540113 PCF11O94913 1555 aaKnown RBP17.17■□□□□ 0.34
C11orf54-214ENST00000540113 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
C11orf54-214ENST00000540113 GAPVD1Q14C86 1478 aa17.15■□□□□ 0.34
C11orf54-214ENST00000540113 CFAP43Q8NDM7 1665 aa17.15■□□□□ 0.34
C11orf54-214ENST00000540113 EFCAB5A4FU69 1503 aa17.14■□□□□ 0.33
C11orf54-214ENST00000540113 FHOD3Q2V2M9 1422 aa17.13■□□□□ 0.33
C11orf54-214ENST00000540113 ITGAEP38570 1179 aa17.13■□□□□ 0.33
C11orf54-214ENST00000540113 NEUROD1Q13562 356 aa17.13■□□□□ 0.33
C11orf54-214ENST00000540113 P3H3Q8IVL6 736 aa17.12■□□□□ 0.33
C11orf54-214ENST00000540113 FHAD1B1AJZ9 1412 aa17.12■□□□□ 0.33
C11orf54-214ENST00000540113 LRRC9Q6ZRR7 1453 aa17.11■□□□□ 0.33
C11orf54-214ENST00000540113 CCNB3Q8WWL7 1395 aa17.1■□□□□ 0.33
C11orf54-214ENST00000540113 ERCC6Q03468 1493 aa17.1■□□□□ 0.33
C11orf54-214ENST00000540113 WDR62O43379 1518 aa17.1■□□□□ 0.33
C11orf54-214ENST00000540113 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
C11orf54-214ENST00000540113 FYCO1Q9BQS8 1478 aa17.06■□□□□ 0.32
C11orf54-214ENST00000540113 PBRM1Q86U86 1689 aa17.06■□□□□ 0.32
C11orf54-214ENST00000540113 SAMD9Q5K651 1589 aa17.05■□□□□ 0.32
C11orf54-214ENST00000540113 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
C11orf54-214ENST00000540113 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.32
C11orf54-214ENST00000540113 ATP1B4Q9UN42 357 aaPredicted RBP17.04■□□□□ 0.32
C11orf54-214ENST00000540113 CASKIN1Q8WXD9 1431 aa17.04■□□□□ 0.32
C11orf54-214ENST00000540113 PHLDB1Q86UU1 1377 aa17.03■□□□□ 0.32
C11orf54-214ENST00000540113 SNAPC4Q5SXM2 1469 aa17.02■□□□□ 0.31
C11orf54-214ENST00000540113 YTHDC1Q96MU7 727 aaKnown RBP17.01■□□□□ 0.31
C11orf54-214ENST00000540113 IFT140Q96RY7 1462 aa17.01■□□□□ 0.31
C11orf54-214ENST00000540113 THOC2Q8NI27 1593 aaKnown RBP17■□□□□ 0.31
C11orf54-214ENST00000540113 MIER1Q8N108 512 aa17■□□□□ 0.31
C11orf54-214ENST00000540113 LRRIQ1Q96JM4 1722 aa16.98■□□□□ 0.31
C11orf54-214ENST00000540113 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
C11orf54-214ENST00000540113 FMN1Q68DA7 1419 aa16.98■□□□□ 0.31
C11orf54-214ENST00000540113 CENPBP07199 599 aaPredicted RBP16.95■□□□□ 0.3
C11orf54-214ENST00000540113 CLSPNQ9HAW4 1339 aa16.94■□□□□ 0.3
C11orf54-214ENST00000540113 GTF3C3Q9Y5Q9 886 aa16.93■□□□□ 0.3
C11orf54-214ENST00000540113 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
C11orf54-214ENST00000540113 ZNF608Q9ULD9 1512 aaPredicted RBP16.92■□□□□ 0.3
C11orf54-214ENST00000540113 FAM50AQ14320 339 aaKnown RBP16.91■□□□□ 0.3
C11orf54-214ENST00000540113 RAB3GAP2Q9H2M9 1393 aa16.89■□□□□ 0.29
C11orf54-214ENST00000540113 IQGAP2Q13576 1575 aa16.89■□□□□ 0.29
C11orf54-214ENST00000540113 SETD5Q9C0A6 1442 aa16.85■□□□□ 0.29
C11orf54-214ENST00000540113 MAPKBP1O60336 1514 aa16.84■□□□□ 0.29
C11orf54-214ENST00000540113 EIF4G3O43432 1585 aaKnown RBP16.84■□□□□ 0.29
C11orf54-214ENST00000540113 FGD6Q6ZV73 1430 aa16.82■□□□□ 0.28
C11orf54-214ENST00000540113 MTUS2Q5JR59 1369 aa16.82■□□□□ 0.28
C11orf54-214ENST00000540113 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.82■□□□□ 0.28
C11orf54-214ENST00000540113 MAGI3Q5TCQ9 1506 aa16.81■□□□□ 0.28
C11orf54-214ENST00000540113 EHBP1L1Q8N3D4 1523 aa16.8■□□□□ 0.28
C11orf54-214ENST00000540113 UGGT2Q9NYU1 1516 aa16.8■□□□□ 0.28
C11orf54-214ENST00000540113 NCOA2Q15596 1464 aa16.79■□□□□ 0.28
C11orf54-214ENST00000540113 SUPT6HQ7KZ85 1726 aaKnown RBP16.79■□□□□ 0.28
C11orf54-214ENST00000540113 HECW1Q76N89 1606 aa16.79■□□□□ 0.28
C11orf54-214ENST00000540113 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
C11orf54-214ENST00000540113 CCDC18Q5T9S5 1454 aa16.76■□□□□ 0.27
C11orf54-214ENST00000540113 ARHGEF11O15085 1522 aa16.76■□□□□ 0.27
C11orf54-214ENST00000540113 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
C11orf54-214ENST00000540113 MYOM3Q5VTT5 1437 aa16.75■□□□□ 0.27
C11orf54-214ENST00000540113 MAGI1Q96QZ7 1491 aaPredicted RBP16.74■□□□□ 0.27
C11orf54-214ENST00000540113 EPRSP07814 1512 aaKnown RBP16.73■□□□□ 0.27
C11orf54-214ENST00000540113 KIAA0586Q9BVV6 1533 aa16.73■□□□□ 0.27
C11orf54-214ENST00000540113 PTPRKQ15262 1439 aa16.73■□□□□ 0.27
C11orf54-214ENST00000540113 KIAA0556O60303 1618 aa16.73■□□□□ 0.27
C11orf54-214ENST00000540113 CDK13Q14004 1512 aaKnown RBP16.73■□□□□ 0.27
C11orf54-214ENST00000540113 DISP1Q96F81 1524 aa16.73■□□□□ 0.27
C11orf54-214ENST00000540113 PTPN23Q9H3S7 1636 aa16.7■□□□□ 0.26
C11orf54-214ENST00000540113 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
C11orf54-214ENST00000540113 SYNJ2O15056 1496 aa16.67■□□□□ 0.26
C11orf54-214ENST00000540113 HFM1A2PYH4 1435 aa16.66■□□□□ 0.26
C11orf54-214ENST00000540113 TCOF1Q13428 1488 aaKnown RBP16.65■□□□□ 0.26
C11orf54-214ENST00000540113 ARID3CA6NKF2 412 aa16.65■□□□□ 0.26
C11orf54-214ENST00000540113 CHMP7Q8WUX9 453 aaPredicted RBP16.64■□□□□ 0.25
C11orf54-214ENST00000540113 NUP153P49790 1475 aaKnown RBP16.62■□□□□ 0.25
C11orf54-214ENST00000540113 NAIPQ13075 1403 aa16.62■□□□□ 0.25
C11orf54-214ENST00000540113 RAPGEF6Q8TEU7 1601 aa16.62■□□□□ 0.25
C11orf54-214ENST00000540113 HIRIP3Q9BW71 556 aaPredicted RBP16.61■□□□□ 0.25
C11orf54-214ENST00000540113 NUP160Q12769 1436 aa16.58■□□□□ 0.24
C11orf54-214ENST00000540113 GCC2Q8IWJ2 1684 aa16.58■□□□□ 0.24
C11orf54-214ENST00000540113 UACAQ9BZF9 1416 aa16.57■□□□□ 0.24
C11orf54-214ENST00000540113 KCNH8Q96L42 1107 aa16.57■□□□□ 0.24
C11orf54-214ENST00000540113 MIA2Q96PC5 1412 aa16.56■□□□□ 0.24
C11orf54-214ENST00000540113 FBLN2P98095 1184 aa16.56■□□□□ 0.24
C11orf54-214ENST00000540113 CHIC2Q9UKJ5 165 aa16.54■□□□□ 0.24
C11orf54-214ENST00000540113 DDX10Q13206 875 aaKnown RBP16.54■□□□□ 0.24
C11orf54-214ENST00000540113 KDM6BO15054 1643 aa16.53■□□□□ 0.24
C11orf54-214ENST00000540113 PLB1Q6P1J6 1458 aa16.53■□□□□ 0.24
C11orf54-214ENST00000540113 PELP1Q8IZL8 1130 aaKnown RBP16.51■□□□□ 0.23
C11orf54-214ENST00000540113 RRP7BPQ9NSQ0 103 aa16.51■□□□□ 0.23
C11orf54-214ENST00000540113 AKNAQ7Z591 1439 aa16.51■□□□□ 0.23
C11orf54-214ENST00000540113 PPP1R15AO75807 674 aaPredicted RBP16.5■□□□□ 0.23
C11orf54-214ENST00000540113 TIMELESSQ9UNS1 1208 aa16.49■□□□□ 0.23
C11orf54-214ENST00000540113 DENND4BO75064 1496 aaPredicted RBP16.48■□□□□ 0.23
C11orf54-214ENST00000540113 PRG4Q92954 1404 aaPredicted RBP16.47■□□□□ 0.23
C11orf54-214ENST00000540113 DNMT1P26358 1616 aaKnown RBP16.47■□□□□ 0.23
C11orf54-214ENST00000540113 JPH4Q96JJ6 628 aa16.47■□□□□ 0.23
C11orf54-214ENST00000540113 CARMIL2Q6F5E8 1435 aa16.47■□□□□ 0.23
C11orf54-214ENST00000540113 TROQ12816 1431 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms