RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 CUL7Q14999 1698 aa17.36■□□□□ 0.37
LEMD3-202ENST00000539442 GOLGA3Q08378 1498 aa17.35■□□□□ 0.37
LEMD3-202ENST00000539442 PBRM1Q86U86 1689 aa17.35■□□□□ 0.37
LEMD3-202ENST00000539442 CARMIL1Q5VZK9 1371 aa17.34■□□□□ 0.37
LEMD3-202ENST00000539442 RAPGEF2Q9Y4G8 1499 aa17.31■□□□□ 0.36
LEMD3-202ENST00000539442 LOC105371045A0A1W2PR82 267 aa17.3■□□□□ 0.36
LEMD3-202ENST00000539442 FHAD1B1AJZ9 1412 aa17.3■□□□□ 0.36
LEMD3-202ENST00000539442 MAGI1Q96QZ7 1491 aaPredicted RBP17.29■□□□□ 0.36
LEMD3-202ENST00000539442 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
LEMD3-202ENST00000539442 SNAPC4Q5SXM2 1469 aa17.27■□□□□ 0.36
LEMD3-202ENST00000539442 TNIKQ9UKE5 1360 aa17.24■□□□□ 0.35
LEMD3-202ENST00000539442 UBTFP17480 764 aaKnown RBP17.21■□□□□ 0.35
LEMD3-202ENST00000539442 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
LEMD3-202ENST00000539442 SYNJ2O15056 1496 aa17.2■□□□□ 0.34
LEMD3-202ENST00000539442 GRIN2AQ12879 1464 aa17.16■□□□□ 0.34
LEMD3-202ENST00000539442 CHMP7Q8WUX9 453 aaPredicted RBP17.13■□□□□ 0.33
LEMD3-202ENST00000539442 CEP162Q5TB80 1403 aa17.09■□□□□ 0.33
LEMD3-202ENST00000539442 CTTNBP2Q8WZ74 1663 aa17.08■□□□□ 0.32
LEMD3-202ENST00000539442 NUP160Q12769 1436 aa17.07■□□□□ 0.32
LEMD3-202ENST00000539442 FBLN2P98095 1184 aa17.06■□□□□ 0.32
LEMD3-202ENST00000539442 KIAA0586Q9BVV6 1533 aa17.05■□□□□ 0.32
LEMD3-202ENST00000539442 CLIP1P30622 1438 aa17.04■□□□□ 0.32
LEMD3-202ENST00000539442 CEP170Q5SW79 1584 aa17.03■□□□□ 0.32
LEMD3-202ENST00000539442 CHD1O14646 1710 aa17.03■□□□□ 0.32
LEMD3-202ENST00000539442 IQGAP2Q13576 1575 aa17.02■□□□□ 0.31
LEMD3-202ENST00000539442 EFCAB5A4FU69 1503 aa16.98■□□□□ 0.31
LEMD3-202ENST00000539442 RNF216Q9NWF9 866 aaPredicted RBP16.97■□□□□ 0.31
LEMD3-202ENST00000539442 ARHGAP35Q9NRY4 1499 aa16.95■□□□□ 0.3
LEMD3-202ENST00000539442 UGGT2Q9NYU1 1516 aa16.95■□□□□ 0.3
LEMD3-202ENST00000539442 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
LEMD3-202ENST00000539442 SAMD9Q5K651 1589 aa16.92■□□□□ 0.3
LEMD3-202ENST00000539442 CLASP1Q7Z460 1538 aa16.91■□□□□ 0.3
LEMD3-202ENST00000539442 ARAP1Q96P48 1450 aa16.9■□□□□ 0.3
LEMD3-202ENST00000539442 JPH4Q96JJ6 628 aa16.87■□□□□ 0.29
LEMD3-202ENST00000539442 VPS8Q8N3P4 1428 aa16.87■□□□□ 0.29
LEMD3-202ENST00000539442 DISP1Q96F81 1524 aa16.86■□□□□ 0.29
LEMD3-202ENST00000539442 KIAA0556O60303 1618 aa16.85■□□□□ 0.29
LEMD3-202ENST00000539442 SHROOM2Q13796 1616 aa16.85■□□□□ 0.29
LEMD3-202ENST00000539442 OSCARQ8IYS5 282 aa16.85■□□□□ 0.29
LEMD3-202ENST00000539442 CARMIL2Q6F5E8 1435 aa16.85■□□□□ 0.29
LEMD3-202ENST00000539442 FHOD3Q2V2M9 1422 aa16.84■□□□□ 0.29
LEMD3-202ENST00000539442 FMN1Q68DA7 1419 aa16.81■□□□□ 0.28
LEMD3-202ENST00000539442 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
LEMD3-202ENST00000539442 PRG4Q92954 1404 aaPredicted RBP16.8■□□□□ 0.28
LEMD3-202ENST00000539442 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
LEMD3-202ENST00000539442 PPP4R3CPQ6ZMV5 832 aa16.78■□□□□ 0.28
LEMD3-202ENST00000539442 CASKIN1Q8WXD9 1431 aa16.73■□□□□ 0.27
LEMD3-202ENST00000539442 FYCO1Q9BQS8 1478 aa16.73■□□□□ 0.27
LEMD3-202ENST00000539442 PCF11O94913 1555 aaKnown RBP16.71■□□□□ 0.27
LEMD3-202ENST00000539442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.69■□□□□ 0.26
LEMD3-202ENST00000539442 PTPRGP23470 1445 aa16.68■□□□□ 0.26
LEMD3-202ENST00000539442 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
LEMD3-202ENST00000539442 MAP3K1Q13233 1512 aa16.66■□□□□ 0.26
LEMD3-202ENST00000539442 APLP2Q06481 763 aa16.66■□□□□ 0.26
LEMD3-202ENST00000539442 HECW1Q76N89 1606 aa16.66■□□□□ 0.26
LEMD3-202ENST00000539442 RAPGEF6Q8TEU7 1601 aa16.63■□□□□ 0.25
LEMD3-202ENST00000539442 ABCA8O94911 1581 aa16.63■□□□□ 0.25
LEMD3-202ENST00000539442 CCDC18Q5T9S5 1454 aa16.61■□□□□ 0.25
LEMD3-202ENST00000539442 PLB1Q6P1J6 1458 aa16.61■□□□□ 0.25
LEMD3-202ENST00000539442 TIAM1Q13009 1591 aa16.6■□□□□ 0.25
LEMD3-202ENST00000539442 TTBK1Q5TCY1 1321 aaPredicted RBP16.6■□□□□ 0.25
LEMD3-202ENST00000539442 UACAQ9BZF9 1416 aa16.6■□□□□ 0.25
LEMD3-202ENST00000539442 ATP1B4Q9UN42 357 aaPredicted RBP16.59■□□□□ 0.25
LEMD3-202ENST00000539442 NUP153P49790 1475 aaKnown RBP16.59■□□□□ 0.25
LEMD3-202ENST00000539442 CFAP43Q8NDM7 1665 aa16.59■□□□□ 0.25
LEMD3-202ENST00000539442 ARHGEF11O15085 1522 aa16.58■□□□□ 0.24
LEMD3-202ENST00000539442 EPRSP07814 1512 aaKnown RBP16.57■□□□□ 0.24
LEMD3-202ENST00000539442 UHRF1BP1LA0JNW5 1464 aa16.56■□□□□ 0.24
LEMD3-202ENST00000539442 ABCC2Q92887 1545 aa16.55■□□□□ 0.24
LEMD3-202ENST00000539442 LRRC9Q6ZRR7 1453 aa16.53■□□□□ 0.24
LEMD3-202ENST00000539442 LRRIQ1Q96JM4 1722 aa16.53■□□□□ 0.24
LEMD3-202ENST00000539442 CDK13Q14004 1512 aaKnown RBP16.51■□□□□ 0.23
LEMD3-202ENST00000539442 KANK4Q5T7N3 995 aaPredicted RBP16.5■□□□□ 0.23
LEMD3-202ENST00000539442 RIMBP3CA6NJZ7 1639 aa16.49■□□□□ 0.23
LEMD3-202ENST00000539442 RIMBP3BA6NNM3 1639 aa16.49■□□□□ 0.23
LEMD3-202ENST00000539442 RIMBP3Q9UFD9 1639 aa16.49■□□□□ 0.23
LEMD3-202ENST00000539442 EHBP1L1Q8N3D4 1523 aa16.49■□□□□ 0.23
LEMD3-202ENST00000539442 ATP10BO94823 1461 aa16.48■□□□□ 0.23
LEMD3-202ENST00000539442 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
LEMD3-202ENST00000539442 MTUS2Q5JR59 1369 aa16.48■□□□□ 0.23
LEMD3-202ENST00000539442 KDM5BQ9UGL1 1544 aa16.47■□□□□ 0.23
LEMD3-202ENST00000539442 PPARGC1BQ86YN6 1023 aaKnown RBP16.46■□□□□ 0.23
LEMD3-202ENST00000539442 ADCY10Q96PN6 1610 aa16.45■□□□□ 0.22
LEMD3-202ENST00000539442 DSG3P32926 999 aa16.45■□□□□ 0.22
LEMD3-202ENST00000539442 ARID3CA6NKF2 412 aa16.44■□□□□ 0.22
LEMD3-202ENST00000539442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
LEMD3-202ENST00000539442 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
LEMD3-202ENST00000539442 MAGI3Q5TCQ9 1506 aa16.44■□□□□ 0.22
LEMD3-202ENST00000539442 TROQ12816 1431 aaPredicted RBP16.43■□□□□ 0.22
LEMD3-202ENST00000539442 ZCCHC11Q5TAX3 1644 aaKnown RBP16.41■□□□□ 0.22
LEMD3-202ENST00000539442 PLEKHD1A6NEE1 506 aa16.4■□□□□ 0.22
LEMD3-202ENST00000539442 SUPT6HQ7KZ85 1726 aaKnown RBP16.39■□□□□ 0.21
LEMD3-202ENST00000539442 NCOA2Q15596 1464 aa16.37■□□□□ 0.21
LEMD3-202ENST00000539442 CAPN15O75808 1086 aa16.37■□□□□ 0.21
LEMD3-202ENST00000539442 TRIM26Q12899 539 aaPredicted RBP16.37■□□□□ 0.21
LEMD3-202ENST00000539442 CYB5RLQ6IPT4 315 aa16.36■□□□□ 0.21
LEMD3-202ENST00000539442 NPM1P06748 294 aaKnown RBP eCLIP16.35■□□□□ 0.21
LEMD3-202ENST00000539442 PHLDB1Q86UU1 1377 aa16.34■□□□□ 0.21
LEMD3-202ENST00000539442 KIF14Q15058 1648 aa16.34■□□□□ 0.21
LEMD3-202ENST00000539442 RRBP1Q9P2E9 1410 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms