RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 AEBP2Q6ZN18 517 aaPredicted RBP27.36■■□□□ 1.97
LEMD3-202ENST00000539442 CHIC1Q5VXU3 224 aa25.82■■□□□ 1.72
LEMD3-202ENST00000539442 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
LEMD3-202ENST00000539442 SENP3Q9H4L4 574 aaPredicted RBP23.79■■□□□ 1.4
LEMD3-202ENST00000539442 PHF23Q9BUL5 403 aaPredicted RBP23.18■■□□□ 1.3
LEMD3-202ENST00000539442 POTEDQ86YR6 584 aa22.9■■□□□ 1.26
LEMD3-202ENST00000539442 FOXD1Q16676 465 aa22.16■■□□□ 1.14
LEMD3-202ENST00000539442 CCDC180Q9P1Z9 1646 aa21.8■■□□□ 1.08
LEMD3-202ENST00000539442 MSH5O43196 834 aa21.42■■□□□ 1.02
LEMD3-202ENST00000539442 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
LEMD3-202ENST00000539442 ABCC9O60706 1549 aa20.75■□□□□ 0.91
LEMD3-202ENST00000539442 DCAF1Q9Y4B6 1507 aa20.58■□□□□ 0.89
LEMD3-202ENST00000539442 PIAS4Q8N2W9 510 aaPredicted RBP20.53■□□□□ 0.88
LEMD3-202ENST00000539442 MYO15BQ96JP2 1530 aa20.47■□□□□ 0.87
LEMD3-202ENST00000539442 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
LEMD3-202ENST00000539442 NACADO15069 1562 aa20.37■□□□□ 0.85
LEMD3-202ENST00000539442 RB1CC1Q8TDY2 1594 aa20.25■□□□□ 0.83
LEMD3-202ENST00000539442 SCRIBQ14160 1630 aa19.9■□□□□ 0.78
LEMD3-202ENST00000539442 SHROOM4Q9ULL8 1493 aa19.87■□□□□ 0.77
LEMD3-202ENST00000539442 UNC13AQ9UPW8 1703 aa19.72■□□□□ 0.75
LEMD3-202ENST00000539442 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
LEMD3-202ENST00000539442 ADRA2BP18089 450 aa19.6■□□□□ 0.73
LEMD3-202ENST00000539442 BICRAQ9NZM4 1560 aa19.58■□□□□ 0.73
LEMD3-202ENST00000539442 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
LEMD3-202ENST00000539442 PLPPR3Q6T4P5 718 aa19.41■□□□□ 0.7
LEMD3-202ENST00000539442 CECR2Q9BXF3 1484 aa19.22■□□□□ 0.67
LEMD3-202ENST00000539442 BAZ1AQ9NRL2 1556 aaPredicted RBP19.19■□□□□ 0.66
LEMD3-202ENST00000539442 CACNB1Q02641 598 aaPredicted RBP19.14■□□□□ 0.65
LEMD3-202ENST00000539442 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
LEMD3-202ENST00000539442 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
LEMD3-202ENST00000539442 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
LEMD3-202ENST00000539442 EIF4G1Q04637 1599 aaKnown RBP19.04■□□□□ 0.64
LEMD3-202ENST00000539442 SUPT5HO00267 1087 aaKnown RBP18.99■□□□□ 0.63
LEMD3-202ENST00000539442 PEG3Q9GZU2 1588 aa18.94■□□□□ 0.62
LEMD3-202ENST00000539442 SMARCA2P51531 1590 aa18.89■□□□□ 0.62
LEMD3-202ENST00000539442 WIZO95785 1651 aa18.89■□□□□ 0.61
LEMD3-202ENST00000539442 ATAD2BQ9ULI0 1458 aa18.87■□□□□ 0.61
LEMD3-202ENST00000539442 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
LEMD3-202ENST00000539442 NCAPD3P42695 1498 aa18.79■□□□□ 0.6
LEMD3-202ENST00000539442 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
LEMD3-202ENST00000539442 HMGXB3Q12766 1538 aa18.76■□□□□ 0.59
LEMD3-202ENST00000539442 BAZ1BQ9UIG0 1483 aaKnown RBP18.75■□□□□ 0.59
LEMD3-202ENST00000539442 DMRT2Q9Y5R5 561 aa18.59■□□□□ 0.57
LEMD3-202ENST00000539442 CCDC88BA6NC98 1476 aa18.53■□□□□ 0.56
LEMD3-202ENST00000539442 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
LEMD3-202ENST00000539442 MAPK8IP2Q13387 824 aaPredicted RBP18.33■□□□□ 0.52
LEMD3-202ENST00000539442 CFTRP13569 1480 aa18.28■□□□□ 0.52
LEMD3-202ENST00000539442 CADPSQ9ULU8 1353 aa18.27■□□□□ 0.51
LEMD3-202ENST00000539442 LAMC3Q9Y6N6 1575 aa18.2■□□□□ 0.5
LEMD3-202ENST00000539442 SCAF1Q9H7N4 1312 aaKnown RBP18.19■□□□□ 0.5
LEMD3-202ENST00000539442 PRDM2Q13029 1718 aa18.15■□□□□ 0.5
LEMD3-202ENST00000539442 NESP48681 1621 aa18.12■□□□□ 0.49
LEMD3-202ENST00000539442 PDS5BQ9NTI5 1447 aa18.06■□□□□ 0.48
LEMD3-202ENST00000539442 FANCD2Q9BXW9 1451 aa18.05■□□□□ 0.48
LEMD3-202ENST00000539442 RNF39Q9H2S5 420 aa18.04■□□□□ 0.48
LEMD3-202ENST00000539442 DCAF8L1A6NGE4 600 aa18.02■□□□□ 0.48
LEMD3-202ENST00000539442 ABCC8Q09428 1581 aa18.01■□□□□ 0.47
LEMD3-202ENST00000539442 WRNQ14191 1432 aaPredicted RBP eCLIP18■□□□□ 0.47
LEMD3-202ENST00000539442 CEP164Q9UPV0 1460 aa17.98■□□□□ 0.47
LEMD3-202ENST00000539442 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
LEMD3-202ENST00000539442 KIF21AQ7Z4S6 1674 aa17.9■□□□□ 0.46
LEMD3-202ENST00000539442 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
LEMD3-202ENST00000539442 TOP2BQ02880 1626 aa17.9■□□□□ 0.46
LEMD3-202ENST00000539442 CUX1P39880 1505 aa17.88■□□□□ 0.45
LEMD3-202ENST00000539442 BIVM-ERCC5R4GMW8 1640 aa17.88■□□□□ 0.45
LEMD3-202ENST00000539442 ERCC6Q03468 1493 aa17.87■□□□□ 0.45
LEMD3-202ENST00000539442 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
LEMD3-202ENST00000539442 MRC2Q9UBG0 1479 aa17.84■□□□□ 0.45
LEMD3-202ENST00000539442 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
LEMD3-202ENST00000539442 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
LEMD3-202ENST00000539442 C1QBPQ07021 282 aaKnown RBP17.8■□□□□ 0.44
LEMD3-202ENST00000539442 WDR62O43379 1518 aa17.76■□□□□ 0.43
LEMD3-202ENST00000539442 POTEHQ6S545 545 aa17.75■□□□□ 0.43
LEMD3-202ENST00000539442 FGD5Q6ZNL6 1462 aa17.75■□□□□ 0.43
LEMD3-202ENST00000539442 THOC2Q8NI27 1593 aaKnown RBP17.74■□□□□ 0.43
LEMD3-202ENST00000539442 POLA1P09884 1462 aaPredicted RBP17.71■□□□□ 0.43
LEMD3-202ENST00000539442 EEA1Q15075 1411 aa17.66■□□□□ 0.42
LEMD3-202ENST00000539442 SOGA1O94964 1423 aa17.64■□□□□ 0.42
LEMD3-202ENST00000539442 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
LEMD3-202ENST00000539442 CUX2O14529 1486 aa17.6■□□□□ 0.41
LEMD3-202ENST00000539442 RAD54L2Q9Y4B4 1467 aa17.6■□□□□ 0.41
LEMD3-202ENST00000539442 IFT140Q96RY7 1462 aa17.59■□□□□ 0.41
LEMD3-202ENST00000539442 KIF27Q86VH2 1401 aa17.59■□□□□ 0.41
LEMD3-202ENST00000539442 TARBP1Q13395 1621 aaKnown RBP17.57■□□□□ 0.4
LEMD3-202ENST00000539442 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
LEMD3-202ENST00000539442 RUSC2Q8N2Y8 1516 aa17.54■□□□□ 0.4
LEMD3-202ENST00000539442 FAM9AQ8IZU1 332 aaPredicted RBP17.51■□□□□ 0.39
LEMD3-202ENST00000539442 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
LEMD3-202ENST00000539442 ABCA5Q8WWZ7 1642 aa17.48■□□□□ 0.39
LEMD3-202ENST00000539442 TDRD9Q8NDG6 1382 aaKnown RBP17.46■□□□□ 0.39
LEMD3-202ENST00000539442 GAPVD1Q14C86 1478 aa17.45■□□□□ 0.38
LEMD3-202ENST00000539442 ERICH3Q5RHP9 1530 aa17.42■□□□□ 0.38
LEMD3-202ENST00000539442 ZNF608Q9ULD9 1512 aaPredicted RBP17.42■□□□□ 0.38
LEMD3-202ENST00000539442 IGF1RP08069 1367 aa17.42■□□□□ 0.38
LEMD3-202ENST00000539442 KIF21BO75037 1637 aa17.39■□□□□ 0.38
LEMD3-202ENST00000539442 AQRO60306 1485 aaKnown RBP eCLIP17.39■□□□□ 0.37
LEMD3-202ENST00000539442 PRXQ9BXM0 1461 aa17.39■□□□□ 0.37
LEMD3-202ENST00000539442 EIF4G3O43432 1585 aaKnown RBP17.39■□□□□ 0.37
LEMD3-202ENST00000539442 GRIN2BQ13224 1484 aa17.38■□□□□ 0.37
LEMD3-202ENST00000539442 HOXD11P31277 338 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms